Wall clock time and date at job start Tue Mar 31 2020 07:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47165 * 2 1 4 4 C 1.52996 * 109.47278 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47214 * 305.00143 * 4 3 2 6 6 O 1.42907 * 109.46676 * 65.00498 * 4 3 2 7 7 C 1.52999 * 109.47242 * 185.00218 * 4 3 2 8 8 N 1.46503 * 109.47421 * 180.02562 * 7 4 3 9 9 C 1.34772 * 120.00025 * 179.97438 * 8 7 4 10 10 O 1.21581 * 120.00179 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99750 * 179.97438 * 9 8 7 12 12 C 1.39952 * 120.00189 * 174.84833 * 11 9 8 13 13 C 1.39285 * 119.94795 * 145.76618 * 12 11 9 14 14 C 1.38498 * 120.42931 * 180.02562 * 13 12 11 15 15 C 1.37682 * 120.32036 * 359.97438 * 14 13 12 16 16 C 1.40738 * 119.88333 * 0.02562 * 15 14 13 17 17 C 1.41409 * 120.21141 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00275 * 205.18148 * 17 16 15 19 19 C 1.39930 * 119.99782 * 25.17242 * 17 16 15 20 20 N 1.30827 * 119.99927 * 16.79973 * 19 17 16 21 21 Si 1.86800 * 120.00216 * 196.79622 * 19 17 16 22 22 H 1.48507 * 109.47017 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47071 * 119.99986 * 21 19 17 24 24 H 1.48497 * 109.47406 * 240.00221 * 21 19 17 25 25 C 1.38237 * 119.94479 * 325.49481 * 12 11 9 26 26 H 1.08999 * 109.47114 * 299.99759 * 1 2 3 27 27 H 1.09000 * 109.46869 * 60.00129 * 1 2 3 28 28 H 1.08999 * 109.47005 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47114 * 240.00241 * 2 1 3 30 30 H 1.09000 * 109.46869 * 119.99871 * 2 1 3 31 31 H 1.09008 * 109.46827 * 60.00175 * 3 2 1 32 32 H 1.08996 * 109.47314 * 300.00158 * 3 2 1 33 33 H 0.96689 * 114.00298 * 60.00340 * 6 4 3 34 34 H 1.09007 * 109.47114 * 300.00263 * 7 4 3 35 35 H 1.08999 * 109.47442 * 60.00218 * 7 4 3 36 36 H 0.97006 * 119.99477 * 359.97438 * 8 7 4 37 37 H 0.97006 * 119.99924 * 354.84572 * 11 9 8 38 38 H 1.08003 * 119.78881 * 359.97438 * 13 12 11 39 39 H 1.08002 * 119.83765 * 180.02562 * 14 13 12 40 40 H 1.08001 * 120.05756 * 179.97438 * 15 14 13 41 41 H 0.97005 * 120.00294 * 179.97438 * 20 19 17 42 42 H 1.07993 * 120.16254 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 8 4.0468 0.8730 -1.2203 7 6 4.0799 2.8796 0.1264 8 7 5.5449 2.8797 0.1264 9 6 6.2187 4.0425 0.2277 10 8 5.6108 5.0914 0.3195 11 7 7.5665 4.0425 0.2282 12 6 8.2663 5.2545 0.2245 13 6 9.4778 5.3600 0.9036 14 6 10.1783 6.5547 0.9069 15 6 9.6844 7.6520 0.2378 16 6 8.4615 7.5603 -0.4527 17 6 7.9475 8.6830 -1.1418 18 1 6.8853 8.7695 -1.3167 19 6 8.8152 9.6821 -1.5968 20 7 10.0982 9.4429 -1.6871 21 14 8.1415 11.3574 -2.0754 22 1 6.6691 11.3722 -1.8829 23 1 8.7622 12.4025 -1.2224 24 1 8.4577 11.6294 -3.5005 25 6 7.7567 6.3434 -0.4578 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9564 -0.8899 33 1 3.7618 1.3474 -2.0132 34 1 3.7169 3.4690 -0.7156 35 1 3.7163 3.3140 1.0576 36 1 6.0300 2.0428 0.0535 37 1 8.0515 3.2024 0.2312 38 1 9.8731 4.5048 1.4317 39 1 11.1171 6.6257 1.4363 40 1 10.2340 8.5816 0.2436 41 1 10.6997 10.1353 -2.0029 42 1 6.8198 6.2613 -0.9886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455927261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:04 Heat of formation + Delta-G solvation = -101.802653 kcal Electronic energy + Delta-G solvation = -22484.695632 eV Core-core repulsion = 19041.699266 eV Total energy + Delta-G solvation = -3442.996366 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.45846 -39.50464 -38.78316 -36.22045 -35.43699 -34.98557 -34.74931 -31.73820 -31.11893 -29.60840 -27.28913 -26.86727 -23.60586 -22.84895 -22.65904 -22.17316 -21.50015 -19.58363 -19.32745 -17.80493 -17.34950 -17.28391 -16.76594 -16.47162 -16.27194 -15.89934 -15.58230 -15.20401 -14.96365 -14.73985 -14.63053 -14.13850 -14.02683 -13.63934 -13.48327 -12.99885 -12.90084 -12.78395 -12.74232 -12.65628 -12.20471 -12.17141 -11.99901 -11.70389 -11.55632 -11.50401 -11.27476 -11.03314 -10.90245 -10.76614 -10.13873 -9.38220 -8.71894 -8.57689 -6.35972 0.93137 1.03629 1.36431 1.48274 1.52105 1.68915 2.18324 2.22039 2.75115 3.22452 3.52632 3.62324 3.75421 3.97388 4.07306 4.26904 4.33019 4.48236 4.62148 4.65176 4.65764 4.73251 4.94828 4.99037 5.05888 5.08441 5.11075 5.13555 5.20521 5.26753 5.33538 5.39074 5.44145 5.49432 5.73162 5.84072 6.06768 6.12244 6.19993 6.37683 6.69852 6.75793 6.95251 7.02091 7.10711 7.59880 8.34360 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022274 B = 0.002874 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.772601 B = 9741.533040 C =10701.474004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.146 4.146 4 C 0.112 3.888 5 H 0.113 0.887 6 O -0.568 6.568 7 C 0.105 3.895 8 N -0.721 5.721 9 C 0.693 3.307 10 O -0.621 6.621 11 N -0.671 5.671 12 C 0.177 3.823 13 C -0.252 4.252 14 C -0.090 4.090 15 C -0.199 4.199 16 C 0.088 3.912 17 C -0.501 4.501 18 H 0.061 0.939 19 C 0.037 3.963 20 N -0.822 5.822 21 Si 0.982 3.018 22 H -0.266 1.266 23 H -0.258 1.258 24 H -0.261 1.261 25 C -0.237 4.237 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.387 0.613 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.413 0.587 37 H 0.417 0.583 38 H 0.132 0.868 39 H 0.124 0.876 40 H 0.105 0.895 41 H 0.289 0.711 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.352 -17.361 2.428 20.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.184 4.184 4 C 0.053 3.947 5 H 0.131 0.869 6 O -0.375 6.375 7 C -0.020 4.020 8 N -0.379 5.379 9 C 0.393 3.607 10 O -0.500 6.500 11 N -0.319 5.319 12 C 0.083 3.917 13 C -0.273 4.273 14 C -0.109 4.109 15 C -0.219 4.219 16 C 0.085 3.915 17 C -0.531 4.531 18 H 0.079 0.921 19 C -0.178 4.178 20 N -0.448 5.448 21 Si 0.803 3.197 22 H -0.190 1.190 23 H -0.183 1.183 24 H -0.186 1.186 25 C -0.259 4.259 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.237 0.763 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.250 0.750 37 H 0.255 0.745 38 H 0.150 0.850 39 H 0.142 0.858 40 H 0.123 0.877 41 H 0.100 0.900 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.467 -16.810 2.819 20.544 hybrid contribution -0.076 0.669 -0.723 0.988 sum -11.544 -16.142 2.095 19.955 Atomic orbital electron populations 1.21792 0.95523 1.01946 1.01905 1.21412 0.95897 0.95649 1.02474 1.22222 0.93911 0.98492 1.03817 1.22106 0.93809 0.90409 0.88417 0.86916 1.86542 1.77363 1.57323 1.16245 1.22069 0.78357 0.99175 1.02389 1.44790 1.07324 1.06874 1.78885 1.16224 0.81904 0.84624 0.77944 1.90952 1.68511 1.32465 1.58093 1.42342 1.04399 1.08191 1.76958 1.17295 0.92719 0.85194 0.96542 1.20447 0.97964 0.99473 1.09464 1.20834 0.98894 0.92735 0.98391 1.21300 0.99150 0.98944 1.02554 1.17848 0.92057 0.91713 0.89831 1.19736 0.94669 1.04711 1.33993 0.92084 1.26706 0.94622 1.03556 0.92897 1.69864 1.05020 1.35532 1.34401 0.85173 0.79336 0.76368 0.78865 1.19005 1.18275 1.18568 1.20938 1.02769 0.93983 1.08229 0.92638 0.92760 0.92342 0.91742 0.91823 0.90273 0.90875 0.76332 0.92441 0.91484 0.74973 0.74511 0.85030 0.85770 0.87724 0.90003 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 71.98 0.71 -0.88 16 2 C -0.12 -1.29 5.83 30.59 0.18 -1.11 16 3 C -0.15 -1.70 4.89 30.59 0.15 -1.55 16 4 C 0.11 1.55 3.05 30.59 0.09 1.64 16 5 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 6 O -0.57 -8.38 12.62 -148.98 -1.88 -10.26 16 7 C 0.10 2.21 5.34 86.38 0.46 2.67 16 8 N -0.72 -17.91 5.45 -478.54 -2.61 -20.51 16 9 C 0.69 25.67 8.29 179.06 1.48 27.16 16 10 O -0.62 -30.04 14.10 -3.97 -0.06 -30.09 16 11 N -0.67 -24.03 5.34 -317.34 -1.70 -25.73 16 12 C 0.18 8.20 6.25 38.10 0.24 8.43 16 13 C -0.25 -10.82 9.97 22.58 0.23 -10.60 16 14 C -0.09 -4.18 10.02 22.20 0.22 -3.95 16 15 C -0.20 -10.96 8.69 22.75 0.20 -10.76 16 16 C 0.09 5.21 5.57 -21.31 -0.12 5.09 16 17 C -0.50 -29.73 9.05 23.46 0.21 -29.52 16 18 H 0.06 3.66 7.90 -2.91 -0.02 3.63 16 19 C 0.04 1.97 5.16 85.25 0.44 2.41 16 20 N -0.82 -44.50 10.94 21.82 0.24 -44.26 16 21 Si 0.98 40.67 29.59 68.60 2.03 42.70 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 23 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 24 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 25 C -0.24 -13.23 8.39 22.85 0.19 -13.03 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.78 7.82 -2.39 -0.02 0.77 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.39 4.11 9.04 -74.06 -0.67 3.44 16 34 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.41 7.69 8.37 -92.70 -0.78 6.92 16 37 H 0.42 10.90 8.84 -92.70 -0.82 10.08 16 38 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 39 H 0.12 4.88 8.06 -2.91 -0.02 4.85 16 40 H 0.10 5.93 6.17 -2.91 -0.02 5.91 16 41 H 0.29 13.95 8.30 -92.70 -0.77 13.18 16 42 H 0.08 4.86 6.49 -2.91 -0.02 4.84 16 Total: -1.00 -74.54 352.08 -0.50 -75.03 By element: Atomic # 1 Polarization: 38.32 SS G_CDS: -1.21 Total: 37.10 kcal Atomic # 6 Polarization: -28.67 SS G_CDS: 4.69 Total: -23.99 kcal Atomic # 7 Polarization: -86.44 SS G_CDS: -4.07 Total: -90.50 kcal Atomic # 8 Polarization: -38.42 SS G_CDS: -1.94 Total: -40.35 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -74.54 -0.50 -75.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455927261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.771 kcal (2) G-P(sol) polarization free energy of solvation -74.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds