Wall clock time and date at job start Tue Mar 31 2020 06:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46947 * 2 1 4 4 C 1.50701 * 109.46795 * 180.02562 * 3 2 1 5 5 C 1.38121 * 119.55056 * 124.72482 * 4 3 2 6 6 C 1.39899 * 118.98878 * 179.75556 * 5 4 3 7 7 C 1.47988 * 120.92806 * 180.26500 * 6 5 4 8 8 O 1.21567 * 120.00128 * 323.37245 * 7 6 5 9 9 N 1.34772 * 120.00063 * 143.37672 * 7 6 5 10 10 C 1.36801 * 120.00097 * 186.69163 * 9 7 6 11 11 H 1.07994 * 119.99928 * 135.09191 * 10 9 7 12 12 C 1.39109 * 119.99735 * 315.09236 * 10 9 7 13 13 N 1.31317 * 120.00101 * 337.20323 * 12 10 9 14 14 Si 1.86799 * 119.99651 * 157.20002 * 12 10 9 15 15 H 1.48498 * 109.46980 * 90.00100 * 14 12 10 16 16 H 1.48497 * 109.47160 * 210.00070 * 14 12 10 17 17 H 1.48503 * 109.47382 * 330.00338 * 14 12 10 18 18 C 1.46498 * 120.00086 * 6.69141 * 9 7 6 19 19 C 1.53001 * 109.47207 * 101.41860 * 18 9 7 20 20 O 1.42900 * 109.47028 * 64.99772 * 19 18 9 21 21 C 1.42902 * 114.00051 * 179.97438 * 20 19 18 22 22 C 1.39927 * 118.14071 * 0.50415 * 6 5 4 23 23 C 1.38082 * 118.99176 * 359.75503 * 22 6 5 24 24 N 1.31830 * 119.54522 * 304.99377 * 4 3 2 25 25 H 1.08997 * 109.47079 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46953 * 300.00102 * 1 2 3 27 27 H 1.08994 * 109.47375 * 60.00230 * 1 2 3 28 28 H 1.09004 * 109.47154 * 119.99776 * 2 1 3 29 29 H 1.08994 * 109.46626 * 239.99587 * 2 1 3 30 30 H 1.09004 * 109.47011 * 299.99863 * 3 2 1 31 31 H 1.08988 * 109.47430 * 60.00065 * 3 2 1 32 32 H 1.07996 * 120.50634 * 0.02562 * 5 4 3 33 33 H 0.97006 * 119.99813 * 185.04968 * 13 12 10 34 34 H 1.09005 * 109.47132 * 221.41360 * 18 9 7 35 35 H 1.08995 * 109.47000 * 341.41772 * 18 9 7 36 36 H 1.08996 * 109.47582 * 185.00035 * 19 18 9 37 37 H 1.09005 * 109.46804 * 305.00292 * 19 18 9 38 38 H 1.08997 * 109.47393 * 180.02562 * 21 20 19 39 39 H 1.09007 * 109.47428 * 300.00410 * 21 20 19 40 40 H 1.09001 * 109.46855 * 59.99979 * 21 20 19 41 41 H 1.08003 * 120.50472 * 179.78181 * 22 6 5 42 42 H 1.08004 * 119.54674 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2278 2.1270 -0.9884 6 6 5.6267 2.1235 -0.9747 7 6 6.3993 2.8475 -2.0086 8 8 5.9982 2.8797 -3.1558 9 7 7.5476 3.4710 -1.6785 10 6 8.1902 4.2531 -2.5987 11 1 8.5719 5.2217 -2.3116 12 6 8.3521 3.8007 -3.9042 13 7 8.3145 2.5138 -4.1625 14 14 8.6228 5.0240 -5.2897 15 1 10.0780 5.2678 -5.4575 16 1 8.0642 4.4747 -6.5512 17 1 7.9414 6.3021 -4.9618 18 6 8.1076 3.3112 -0.3343 19 6 9.2573 2.3025 -0.3773 20 8 10.3230 2.8285 -1.1708 21 6 11.4529 1.9600 -1.2758 22 6 6.2750 1.4120 0.0409 23 6 5.5147 0.7510 0.9852 24 7 4.1974 0.7846 0.9385 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.6884 2.6606 -1.7570 33 1 8.4999 2.1935 -5.0592 34 1 8.4805 4.2721 0.0206 35 1 7.3326 2.9501 0.3416 36 1 9.6157 2.1166 0.6351 37 1 8.9049 1.3686 -0.8153 38 1 12.2175 2.4314 -1.8931 39 1 11.8568 1.7674 -0.2818 40 1 11.1464 1.0187 -1.7320 41 1 7.3536 1.3808 0.0859 42 1 6.0057 0.1988 1.7728 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457202644.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:36 Heat of formation + Delta-G solvation = -22.059335 kcal Electronic energy + Delta-G solvation = -23971.816808 eV Core-core repulsion = 20532.278372 eV Total energy + Delta-G solvation = -3439.538436 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.18656 -38.25404 -36.89302 -35.06746 -34.26316 -32.60778 -31.33438 -30.97274 -28.94513 -26.79621 -25.80667 -25.24781 -23.30862 -22.51036 -22.05323 -21.08833 -19.33531 -17.17674 -16.35668 -16.29754 -15.85161 -15.16613 -14.99800 -14.92132 -14.80693 -14.26782 -14.18036 -13.88582 -13.81892 -13.47005 -13.00585 -12.69833 -12.55976 -12.15807 -11.98488 -11.63942 -11.41093 -11.26487 -11.14998 -11.05781 -10.88506 -10.79759 -10.71080 -10.62780 -10.41001 -10.11641 -9.28510 -9.18937 -8.92983 -8.71134 -8.55490 -8.12293 -7.17341 -6.10656 -3.76587 1.41564 1.49943 3.33224 3.42274 3.44876 3.88271 4.26248 4.44073 4.52320 4.53772 4.71888 4.99408 5.09707 5.14246 5.21378 5.36932 5.45705 5.49222 5.55508 5.63826 5.72062 5.78506 5.80630 5.83121 5.86438 5.88295 5.98089 5.98966 6.05691 6.07870 6.14660 6.19378 6.25615 6.36961 6.46749 6.56716 6.70901 7.04429 7.66709 7.90727 8.26569 8.29883 9.01025 9.11113 9.61148 10.19435 10.98042 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017873 B = 0.004858 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.220160 B = 5762.591294 C = 6936.200006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.065 4.065 4 C 0.120 3.880 5 C -0.134 4.134 6 C -0.043 4.043 7 C 0.491 3.509 8 O -0.527 6.527 9 N -0.424 5.424 10 C -0.330 4.330 11 H 0.082 0.918 12 C 0.083 3.917 13 N -0.817 5.817 14 Si 0.908 3.092 15 H -0.283 1.283 16 H -0.285 1.285 17 H -0.271 1.271 18 C 0.081 3.919 19 C 0.054 3.946 20 O -0.347 6.347 21 C 0.035 3.965 22 C -0.181 4.181 23 C 0.092 3.908 24 N -0.489 5.489 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.136 0.864 33 H 0.263 0.737 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.037 0.963 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.025 0.975 40 H 0.034 0.966 41 H 0.146 0.854 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.525 -3.936 10.501 12.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.103 4.103 4 C -0.018 4.018 5 C -0.155 4.155 6 C -0.054 4.054 7 C 0.279 3.721 8 O -0.406 6.406 9 N -0.144 5.144 10 C -0.457 4.457 11 H 0.099 0.901 12 C -0.130 4.130 13 N -0.449 5.449 14 Si 0.736 3.264 15 H -0.209 1.209 16 H -0.211 1.211 17 H -0.196 1.196 18 C -0.043 4.043 19 C -0.024 4.024 20 O -0.264 6.264 21 C -0.062 4.062 22 C -0.202 4.202 23 C -0.065 4.065 24 N -0.200 5.200 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.154 0.846 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.043 0.957 40 H 0.053 0.947 41 H 0.164 0.836 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.247 -4.296 10.272 12.308 hybrid contribution 1.071 0.469 -1.205 1.679 sum -4.176 -3.827 9.067 10.691 Atomic orbital electron populations 1.21787 0.95966 1.01463 1.01668 1.21427 0.95145 0.95987 1.02799 1.20513 0.88779 0.98099 1.02871 1.21070 0.96326 0.93536 0.90827 1.21994 0.93649 1.00529 0.99356 1.21061 0.94496 0.95008 0.94883 1.17844 0.81809 0.84977 0.87507 1.90637 1.69361 1.61339 1.19276 1.43072 1.17572 1.43987 1.09800 1.18862 1.38613 0.98591 0.89657 0.90076 1.25174 0.93870 0.95068 0.98848 1.69814 1.40407 1.13496 1.21215 0.86279 0.77581 0.81354 0.81230 1.20892 1.21087 1.19559 1.22189 0.94353 0.99159 0.88600 1.22896 0.89207 0.97527 0.92739 1.88185 1.25145 1.41579 1.71525 1.22603 0.89677 0.95001 0.98920 1.22855 1.02312 0.99031 0.95966 1.22554 0.89352 0.96770 0.97797 1.67240 1.10079 1.18349 1.24284 0.92873 0.92787 0.92793 0.90958 0.92206 0.90476 0.90346 0.84613 0.92717 0.91418 0.89271 0.94536 0.93504 0.90472 0.95656 0.94696 0.83630 0.83059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.12 -1.35 5.79 -26.73 -0.15 -1.50 16 3 C -0.06 -0.82 5.61 -27.88 -0.16 -0.97 16 4 C 0.12 1.93 6.18 -82.64 -0.51 1.42 16 5 C -0.13 -2.51 9.34 -39.00 -0.36 -2.88 16 6 C -0.04 -0.89 5.43 -104.65 -0.57 -1.46 16 7 C 0.49 12.57 6.88 -12.27 -0.08 12.49 16 8 O -0.53 -15.70 14.56 5.31 0.08 -15.62 16 9 N -0.42 -10.53 2.52 -115.84 -0.29 -10.82 16 10 C -0.33 -9.02 8.15 -15.01 -0.12 -9.15 16 11 H 0.08 2.17 7.93 -52.49 -0.42 1.76 16 12 C 0.08 2.31 4.23 -17.45 -0.07 2.24 16 13 N -0.82 -23.97 11.93 55.50 0.66 -23.31 16 14 Si 0.91 22.05 29.61 -169.99 -5.03 17.02 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 C 0.08 1.58 5.35 -4.04 -0.02 1.56 16 19 C 0.05 1.00 5.21 37.16 0.19 1.19 16 20 O -0.35 -7.25 9.64 -35.23 -0.34 -7.59 16 21 C 0.04 0.58 11.01 101.05 1.11 1.70 16 22 C -0.18 -3.15 7.49 -39.01 -0.29 -3.44 16 23 C 0.09 1.40 11.17 -17.60 -0.20 1.20 16 24 N -0.49 -7.88 9.85 -9.53 -0.09 -7.98 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.89 7.94 -51.93 -0.41 0.47 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.08 0.90 7.87 -51.93 -0.41 0.49 16 31 H 0.08 0.90 8.14 -51.94 -0.42 0.48 16 32 H 0.14 2.51 7.95 -52.49 -0.42 2.10 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.07 1.28 8.13 -51.93 -0.42 0.85 16 35 H 0.09 1.53 4.21 -51.93 -0.22 1.31 16 36 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.93 7.07 -51.93 -0.37 0.56 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.15 2.40 3.56 -52.48 -0.19 2.21 16 42 H 0.15 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 345.48 15.07 5.21 5.21 Total: -1.00 -33.68 345.48 -6.90 -40.57 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.21 Total: 1.15 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -0.87 Total: 1.36 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.28 Total: -42.11 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.26 Total: -23.20 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.68 -6.90 -40.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457202644.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.515 kcal (2) G-P(sol) polarization free energy of solvation -33.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds