Wall clock time and date at job start Tue Mar 31 2020 06:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46947 * 2 1 4 4 C 1.50701 * 109.46795 * 180.02562 * 3 2 1 5 5 C 1.38121 * 119.55056 * 124.72482 * 4 3 2 6 6 C 1.39899 * 118.98878 * 179.75556 * 5 4 3 7 7 C 1.47988 * 120.92806 * 180.26500 * 6 5 4 8 8 O 1.21567 * 120.00128 * 323.37245 * 7 6 5 9 9 N 1.34772 * 120.00063 * 143.37672 * 7 6 5 10 10 C 1.36801 * 120.00097 * 186.69163 * 9 7 6 11 11 H 1.07994 * 119.99928 * 135.09191 * 10 9 7 12 12 C 1.39109 * 119.99735 * 315.09236 * 10 9 7 13 13 N 1.31317 * 120.00101 * 337.20323 * 12 10 9 14 14 Si 1.86799 * 119.99651 * 157.20002 * 12 10 9 15 15 H 1.48498 * 109.46980 * 90.00100 * 14 12 10 16 16 H 1.48497 * 109.47160 * 210.00070 * 14 12 10 17 17 H 1.48503 * 109.47382 * 330.00338 * 14 12 10 18 18 C 1.46498 * 120.00086 * 6.69141 * 9 7 6 19 19 C 1.53001 * 109.47207 * 101.41860 * 18 9 7 20 20 O 1.42900 * 109.47028 * 64.99772 * 19 18 9 21 21 C 1.42902 * 114.00051 * 179.97438 * 20 19 18 22 22 C 1.39927 * 118.14071 * 0.50415 * 6 5 4 23 23 C 1.38082 * 118.99176 * 359.75503 * 22 6 5 24 24 N 1.31830 * 119.54522 * 304.99377 * 4 3 2 25 25 H 1.08997 * 109.47079 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46953 * 300.00102 * 1 2 3 27 27 H 1.08994 * 109.47375 * 60.00230 * 1 2 3 28 28 H 1.09004 * 109.47154 * 119.99776 * 2 1 3 29 29 H 1.08994 * 109.46626 * 239.99587 * 2 1 3 30 30 H 1.09004 * 109.47011 * 299.99863 * 3 2 1 31 31 H 1.08988 * 109.47430 * 60.00065 * 3 2 1 32 32 H 1.07996 * 120.50634 * 0.02562 * 5 4 3 33 33 H 0.97006 * 119.99813 * 185.04968 * 13 12 10 34 34 H 1.09005 * 109.47132 * 221.41360 * 18 9 7 35 35 H 1.08995 * 109.47000 * 341.41772 * 18 9 7 36 36 H 1.08996 * 109.47582 * 185.00035 * 19 18 9 37 37 H 1.09005 * 109.46804 * 305.00292 * 19 18 9 38 38 H 1.08997 * 109.47393 * 180.02562 * 21 20 19 39 39 H 1.09007 * 109.47428 * 300.00410 * 21 20 19 40 40 H 1.09001 * 109.46855 * 59.99979 * 21 20 19 41 41 H 1.08003 * 120.50472 * 179.78181 * 22 6 5 42 42 H 1.08004 * 119.54674 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2278 2.1270 -0.9884 6 6 5.6267 2.1235 -0.9747 7 6 6.3993 2.8475 -2.0086 8 8 5.9982 2.8797 -3.1558 9 7 7.5476 3.4710 -1.6785 10 6 8.1902 4.2531 -2.5987 11 1 8.5719 5.2217 -2.3116 12 6 8.3521 3.8007 -3.9042 13 7 8.3145 2.5138 -4.1625 14 14 8.6228 5.0240 -5.2897 15 1 10.0780 5.2678 -5.4575 16 1 8.0642 4.4747 -6.5512 17 1 7.9414 6.3021 -4.9618 18 6 8.1076 3.3112 -0.3343 19 6 9.2573 2.3025 -0.3773 20 8 10.3230 2.8285 -1.1708 21 6 11.4529 1.9600 -1.2758 22 6 6.2750 1.4120 0.0409 23 6 5.5147 0.7510 0.9852 24 7 4.1974 0.7846 0.9385 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.6884 2.6606 -1.7570 33 1 8.4999 2.1935 -5.0592 34 1 8.4805 4.2721 0.0206 35 1 7.3326 2.9501 0.3416 36 1 9.6157 2.1166 0.6351 37 1 8.9049 1.3686 -0.8153 38 1 12.2175 2.4314 -1.8931 39 1 11.8568 1.7674 -0.2818 40 1 11.1464 1.0187 -1.7320 41 1 7.3536 1.3808 0.0859 42 1 6.0057 0.1988 1.7728 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457202644.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:34 Heat of formation + Delta-G solvation = -44.096468 kcal Electronic energy + Delta-G solvation = -23972.772409 eV Core-core repulsion = 20532.278372 eV Total energy + Delta-G solvation = -3440.494038 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.65835 -39.92493 -38.47373 -36.29080 -35.98693 -34.36303 -32.97325 -32.24441 -30.56378 -27.87717 -27.45700 -26.83857 -24.93561 -23.83842 -23.46500 -22.28486 -21.00361 -18.93175 -17.96414 -17.82904 -17.21859 -16.94581 -16.46586 -16.39931 -16.04848 -15.87839 -15.60707 -15.51512 -15.08755 -14.77190 -14.60425 -14.24413 -13.76281 -13.67942 -13.20674 -13.03292 -12.93719 -12.87887 -12.66549 -12.56821 -12.46245 -12.20182 -12.10969 -12.01698 -11.82251 -11.56057 -10.89934 -10.73073 -10.60451 -10.33864 -10.04419 -9.81602 -9.17816 -8.19252 -5.88574 -0.03903 0.13955 1.36895 1.44102 1.50685 2.24612 2.38805 2.88561 2.92210 3.11441 3.28030 3.35485 3.80644 3.84927 4.05860 4.07804 4.21200 4.26379 4.28753 4.35340 4.41822 4.47456 4.54291 4.62794 4.64999 4.66904 4.74139 4.84000 4.89720 4.91871 4.98406 5.04182 5.08984 5.24194 5.27199 5.38327 5.50483 5.53643 5.72389 6.20600 6.53443 6.97775 7.01467 7.13006 7.61955 8.23246 8.89695 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017873 B = 0.004858 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.220160 B = 5762.591294 C = 6936.200006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C -0.065 4.065 4 C 0.129 3.871 5 C -0.150 4.150 6 C -0.069 4.069 7 C 0.482 3.518 8 O -0.585 6.585 9 N -0.436 5.436 10 C -0.345 4.345 11 H 0.078 0.922 12 C 0.038 3.962 13 N -0.854 5.854 14 Si 0.960 3.040 15 H -0.266 1.266 16 H -0.294 1.294 17 H -0.268 1.268 18 C 0.077 3.923 19 C 0.057 3.943 20 O -0.387 6.387 21 C 0.033 3.967 22 C -0.180 4.180 23 C 0.108 3.892 24 N -0.486 5.486 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.126 0.874 33 H 0.256 0.744 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.028 0.972 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.023 0.977 41 H 0.156 0.844 42 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.938 -4.649 13.400 15.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.149 4.149 3 C -0.103 4.103 4 C -0.008 4.008 5 C -0.171 4.171 6 C -0.081 4.081 7 C 0.271 3.729 8 O -0.467 6.467 9 N -0.155 5.155 10 C -0.473 4.473 11 H 0.096 0.904 12 C -0.170 4.170 13 N -0.488 5.488 14 Si 0.786 3.214 15 H -0.191 1.191 16 H -0.221 1.221 17 H -0.193 1.193 18 C -0.045 4.045 19 C -0.020 4.020 20 O -0.305 6.305 21 C -0.063 4.063 22 C -0.200 4.200 23 C -0.048 4.048 24 N -0.197 5.197 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.143 0.857 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.133 0.867 36 H 0.105 0.895 37 H 0.046 0.954 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.042 0.958 41 H 0.173 0.827 42 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -5.633 -4.994 13.216 15.209 hybrid contribution 1.131 0.644 -1.944 2.340 sum -4.502 -4.349 11.271 12.893 Atomic orbital electron populations 1.21752 0.94003 1.02300 1.02398 1.21385 0.96830 0.94842 1.01886 1.20650 0.86330 0.99197 1.04115 1.21504 0.97974 0.91865 0.89494 1.22057 0.93081 1.01615 1.00305 1.20777 0.95067 0.96956 0.95286 1.18584 0.81944 0.84495 0.87840 1.90578 1.70776 1.63451 1.21925 1.43256 1.17599 1.43381 1.11313 1.19003 1.38616 0.99014 0.90640 0.90387 1.25879 0.93913 0.96284 1.00885 1.69918 1.42904 1.15037 1.20944 0.85473 0.78271 0.79404 0.78293 1.19082 1.22079 1.19275 1.22445 0.95578 1.00263 0.86252 1.22910 0.88471 0.95802 0.94835 1.88116 1.26593 1.43243 1.72583 1.22733 0.88623 0.93884 1.01090 1.22953 1.02976 0.98710 0.95362 1.23250 0.88897 0.95151 0.97539 1.67423 1.10589 1.17814 1.23838 0.92036 0.91644 0.92497 0.91307 0.93654 0.89844 0.88479 0.85650 0.93441 0.90858 0.86679 0.89504 0.95400 0.90131 0.91991 0.95789 0.82676 0.78389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.91 71.98 0.71 -1.66 16 2 C -0.11 -2.36 5.79 30.60 0.18 -2.18 16 3 C -0.07 -1.51 5.61 29.85 0.17 -1.34 16 4 C 0.13 3.93 6.18 42.53 0.26 4.20 16 5 C -0.15 -5.62 9.34 22.64 0.21 -5.40 16 6 C -0.07 -2.90 5.43 -19.88 -0.11 -3.01 16 7 C 0.48 25.55 6.88 86.83 0.60 26.15 16 8 O -0.58 -36.62 14.56 -3.93 -0.06 -36.68 16 9 N -0.44 -22.13 2.52 -638.68 -1.61 -23.74 16 10 C -0.35 -19.41 8.15 84.13 0.69 -18.72 16 11 H 0.08 4.30 7.93 -2.91 -0.02 4.28 16 12 C 0.04 2.22 4.23 84.98 0.36 2.58 16 13 N -0.85 -52.30 11.93 21.69 0.26 -52.04 16 14 Si 0.96 46.69 29.61 68.60 2.03 48.72 16 15 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.29 -14.61 7.11 99.48 0.71 -13.91 16 17 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 18 C 0.08 2.95 5.35 86.38 0.46 3.41 16 19 C 0.06 2.01 5.21 71.98 0.37 2.39 16 20 O -0.39 -15.92 9.64 -148.98 -1.44 -17.36 16 21 C 0.03 1.06 11.01 113.37 1.25 2.31 16 22 C -0.18 -5.89 7.49 22.64 0.17 -5.72 16 23 C 0.11 2.89 11.17 84.65 0.95 3.83 16 24 N -0.49 -14.14 9.85 -184.08 -1.81 -15.95 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 1.51 7.94 -2.39 -0.02 1.49 16 29 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.83 7.87 -2.39 -0.02 1.81 16 31 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.13 4.86 7.95 -2.91 -0.02 4.83 16 33 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 34 H 0.07 2.69 8.13 -2.38 -0.02 2.67 16 35 H 0.12 3.73 4.21 -2.39 -0.01 3.72 16 36 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.03 1.08 7.07 -2.38 -0.02 1.07 16 38 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 40 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.16 4.77 3.56 -2.91 -0.01 4.75 16 42 H 0.20 3.43 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -77.16 345.48 4.65 -72.51 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 1.01 Total: 17.70 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 6.27 Total: 6.83 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -3.16 Total: -91.72 kcal Atomic # 8 Polarization: -52.54 SS G_CDS: -1.49 Total: -54.03 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -77.16 4.65 -72.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457202644.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.411 kcal (2) G-P(sol) polarization free energy of solvation -77.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds