Wall clock time and date at job start Tue Mar 31 2020 07:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46931 * 2 1 4 4 C 1.50692 * 109.47309 * 239.99575 * 2 1 3 5 5 H 1.08005 * 120.00242 * 239.99794 * 4 2 1 6 6 C 1.37876 * 120.00089 * 60.00032 * 4 2 1 7 7 N 1.31522 * 119.99921 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00312 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47059 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47372 * 120.00300 * 8 6 4 11 11 H 1.48500 * 109.47300 * 240.00231 * 8 6 4 12 12 C 1.53002 * 109.46687 * 119.99383 * 2 1 3 13 13 N 1.46495 * 109.47400 * 300.00213 * 12 2 1 14 14 C 1.34780 * 119.99957 * 179.97438 * 13 12 2 15 15 O 1.21495 * 119.99758 * 0.02562 * 14 13 12 16 16 C 1.48327 * 120.00269 * 179.97438 * 14 13 12 17 17 N 1.31504 * 127.14956 * 359.97438 * 16 14 13 18 18 O 1.21426 * 111.51956 * 179.97438 * 17 16 14 19 19 C 1.33187 * 111.57724 * 359.95397 * 18 17 16 20 20 C 1.35378 * 106.63354 * 0.07942 * 19 18 17 21 21 C 1.50063 * 124.94163 * 179.81063 * 20 19 18 22 22 C 1.53546 * 108.23164 * 343.97132 * 21 20 19 23 23 C 1.53109 * 109.50983 * 49.17558 * 22 21 20 24 24 C 1.50601 * 129.60591 * 180.22621 * 19 18 17 25 25 H 1.08996 * 109.47092 * 299.99999 * 1 2 3 26 26 H 1.09001 * 109.46707 * 60.00625 * 1 2 3 27 27 H 1.09005 * 109.47104 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47262 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.47138 * 299.99653 * 3 2 1 30 30 H 1.09002 * 109.47442 * 59.99708 * 3 2 1 31 31 H 0.97001 * 120.00150 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.46976 * 180.02562 * 12 2 1 33 33 H 1.08996 * 109.46793 * 60.00843 * 12 2 1 34 34 H 0.97000 * 120.00346 * 0.02562 * 13 12 2 35 35 H 1.09002 * 109.70679 * 103.65729 * 21 20 19 36 36 H 1.08999 * 109.70927 * 224.28503 * 21 20 19 37 37 H 1.08997 * 109.46640 * 289.16177 * 22 21 20 38 38 H 1.09002 * 109.46030 * 169.18899 * 22 21 20 39 39 H 1.09000 * 109.42935 * 170.05859 * 23 22 21 40 40 H 1.08995 * 109.38953 * 50.19300 * 23 22 21 41 41 H 1.08995 * 109.69311 * 282.87341 * 24 19 18 42 42 H 1.08999 * 109.69529 * 43.42645 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6534 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9436 0.8301 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.1476 -2.2865 -3.6035 10 1 1.1680 -1.5868 -4.8164 11 1 3.1474 -0.1860 -4.8159 12 6 2.0399 -0.7211 1.2494 13 7 1.5516 -0.0305 2.4454 14 6 1.8767 -0.4912 3.6696 15 8 2.5751 -1.4790 3.7811 16 6 1.3827 0.2084 4.8807 17 7 0.6251 1.2824 4.9239 18 8 0.3891 1.6153 6.0676 19 6 0.9653 0.7956 6.9451 20 6 1.6273 -0.1400 6.2246 21 6 2.4266 -1.2679 6.8087 22 6 2.6965 -0.9504 8.2865 23 6 1.3877 -0.5447 8.9697 24 6 0.9359 0.8265 8.4505 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8900 31 1 0.7096 1.1617 -3.4844 32 1 3.1300 -0.7208 1.2496 33 1 1.6767 -1.7488 1.2493 34 1 0.9936 0.7580 2.3564 35 1 1.8630 -2.1975 6.7292 36 1 3.3719 -1.3636 6.2746 37 1 3.4122 -0.1315 8.3573 38 1 3.1048 -1.8331 8.7788 39 1 1.5426 -0.4913 10.0473 40 1 0.6198 -1.2865 8.7502 41 1 1.6131 1.5988 8.8152 42 1 -0.0774 1.0345 8.7939 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457990141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:49 Heat of formation + Delta-G solvation = 3.155476 kcal Electronic energy + Delta-G solvation = -23561.873045 eV Core-core repulsion = 20123.428005 eV Total energy + Delta-G solvation = -3438.445040 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.10917 -39.27757 -37.87603 -36.39222 -33.93943 -33.27784 -31.14418 -30.97509 -30.28333 -26.21567 -25.72189 -25.29498 -24.62269 -23.31132 -22.91254 -20.55030 -19.50842 -18.84918 -17.87959 -17.63017 -16.56919 -15.79385 -15.30035 -15.10266 -14.79397 -14.64495 -14.24119 -14.13969 -13.78989 -13.34591 -13.19939 -12.92487 -12.86145 -12.60060 -12.20582 -11.52125 -11.41729 -11.28819 -11.22103 -11.20736 -10.92887 -10.88914 -10.66930 -10.40472 -10.22938 -10.20527 -9.89631 -9.64496 -9.33773 -9.19622 -8.79141 -8.52609 -8.35652 -6.02321 -4.12857 1.15691 1.66686 2.79103 3.27190 3.34898 3.37060 3.42765 3.44197 4.06543 4.36912 4.41967 4.49787 4.52080 4.77304 4.86688 5.01938 5.14882 5.20714 5.24359 5.39180 5.48550 5.55337 5.65709 5.72255 5.83317 5.98781 6.13420 6.18998 6.27612 6.49341 6.70019 6.84732 6.89981 6.96311 7.01070 7.34074 7.55543 7.68700 7.83673 8.00203 8.06809 8.14577 8.36153 8.50632 8.87820 9.53035 10.99214 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037745 B = 0.003241 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.635242 B = 8637.750372 C = 9149.852076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 C -0.132 4.132 4 C -0.506 4.506 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.130 3.870 13 N -0.697 5.697 14 C 0.586 3.414 15 O -0.532 6.532 16 C -0.011 4.011 17 N -0.336 5.336 18 O 0.125 5.875 19 C -0.046 4.046 20 C -0.153 4.153 21 C -0.045 4.045 22 C -0.124 4.124 23 C -0.119 4.119 24 C -0.033 4.033 25 H 0.006 0.994 26 H 0.087 0.913 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.087 0.913 30 H 0.006 0.994 31 H 0.260 0.740 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.405 0.595 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.419 0.560 22.546 22.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 C -0.190 4.190 4 C -0.545 4.545 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.008 3.992 13 N -0.348 5.348 14 C 0.369 3.631 15 O -0.409 6.409 16 C -0.169 4.169 17 N -0.039 5.039 18 O 0.052 5.948 19 C -0.110 4.110 20 C -0.158 4.158 21 C -0.082 4.082 22 C -0.161 4.161 23 C -0.156 4.156 24 C -0.071 4.071 25 H 0.025 0.975 26 H 0.106 0.894 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.106 0.894 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.241 0.759 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.518 0.705 21.429 21.447 hybrid contribution 0.337 -0.486 -0.674 0.897 sum -0.181 0.219 20.755 20.756 Atomic orbital electron populations 1.21844 0.97678 0.99227 1.00236 1.18371 0.92897 0.92820 0.90383 1.21844 0.98593 0.98310 1.00239 1.21005 1.31528 1.12143 0.89796 0.92288 1.24891 0.94838 0.94923 0.98894 1.69822 1.36653 1.22721 1.23163 0.86498 0.78636 0.79727 0.82922 1.19731 1.21049 1.21043 1.21863 0.98400 0.95933 0.82970 1.46260 1.51491 1.31606 1.05431 1.16920 0.80866 0.83664 0.81667 1.90747 1.38322 1.25634 1.86179 1.23274 1.01391 0.95912 0.96335 1.74603 1.15826 1.14459 0.98976 1.84681 1.55203 1.44324 1.10557 1.24105 0.98721 0.92661 0.95551 1.20660 1.03592 1.00932 0.90571 1.19994 0.99667 0.94216 0.94333 1.21724 0.97340 1.02156 0.94881 1.21652 0.98204 0.95462 1.00308 1.20232 1.03759 0.99626 0.83485 0.97473 0.89450 0.95381 0.95380 0.89447 0.97474 0.93017 0.92227 0.92223 0.75899 0.89882 0.89151 0.91383 0.90645 0.90134 0.91011 0.88829 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 8.08 37.16 0.30 -2.81 16 2 C 0.06 1.34 0.50 -155.66 -0.08 1.26 16 3 C -0.13 -3.11 8.08 37.16 0.30 -2.81 16 4 C -0.51 -13.43 8.01 -34.44 -0.28 -13.71 16 5 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.96 9.35 55.43 0.52 -23.44 16 8 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.13 2.86 4.50 -4.04 -0.02 2.84 16 13 N -0.70 -13.79 4.96 -61.10 -0.30 -14.10 16 14 C 0.59 11.31 7.85 -12.11 -0.10 11.21 16 15 O -0.53 -11.23 16.09 5.37 0.09 -11.15 16 16 C -0.01 -0.18 7.19 -82.82 -0.60 -0.77 16 17 N -0.34 -5.38 11.89 33.29 0.40 -4.99 16 18 O 0.13 1.67 11.18 19.20 0.21 1.88 16 19 C -0.05 -0.51 7.38 -35.38 -0.26 -0.77 16 20 C -0.15 -2.05 6.04 -104.91 -0.63 -2.69 16 21 C -0.04 -0.50 5.66 -27.91 -0.16 -0.66 16 22 C -0.12 -0.91 5.92 -26.39 -0.16 -1.06 16 23 C -0.12 -0.69 5.88 -26.45 -0.16 -0.84 16 24 C -0.03 -0.21 6.31 -27.71 -0.17 -0.39 16 25 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 26 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.09 2.25 6.07 -51.93 -0.32 1.93 16 30 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 31 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.40 7.78 5.94 -40.82 -0.24 7.54 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.09 1.14 7.84 -51.93 -0.41 0.73 16 37 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.45 8.12 -51.93 -0.42 0.02 16 41 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 336.08 15.07 5.06 5.06 Total: -1.00 -29.36 336.08 -7.32 -36.68 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.18 Total: 3.72 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -2.09 Total: -9.54 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.61 Total: -42.53 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.30 Total: -9.26 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.36 -7.32 -36.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457990141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.832 kcal (2) G-P(sol) polarization free energy of solvation -29.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds