Wall clock time and date at job start Tue Mar 31 2020 07:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46931 * 2 1 4 4 C 1.50692 * 109.47309 * 239.99575 * 2 1 3 5 5 H 1.08005 * 120.00242 * 239.99794 * 4 2 1 6 6 C 1.37876 * 120.00089 * 60.00032 * 4 2 1 7 7 N 1.31522 * 119.99921 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00312 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47059 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47372 * 120.00300 * 8 6 4 11 11 H 1.48500 * 109.47300 * 240.00231 * 8 6 4 12 12 C 1.53002 * 109.46687 * 119.99383 * 2 1 3 13 13 N 1.46495 * 109.47400 * 300.00213 * 12 2 1 14 14 C 1.34780 * 119.99957 * 179.97438 * 13 12 2 15 15 O 1.21495 * 119.99758 * 0.02562 * 14 13 12 16 16 C 1.48327 * 120.00269 * 179.97438 * 14 13 12 17 17 N 1.31504 * 127.14956 * 359.97438 * 16 14 13 18 18 O 1.21426 * 111.51956 * 179.97438 * 17 16 14 19 19 C 1.33187 * 111.57724 * 359.95397 * 18 17 16 20 20 C 1.35378 * 106.63354 * 0.07942 * 19 18 17 21 21 C 1.50063 * 124.94163 * 179.81063 * 20 19 18 22 22 C 1.53546 * 108.23164 * 343.97132 * 21 20 19 23 23 C 1.53109 * 109.50983 * 49.17558 * 22 21 20 24 24 C 1.50601 * 129.60591 * 180.22621 * 19 18 17 25 25 H 1.08996 * 109.47092 * 299.99999 * 1 2 3 26 26 H 1.09001 * 109.46707 * 60.00625 * 1 2 3 27 27 H 1.09005 * 109.47104 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47262 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.47138 * 299.99653 * 3 2 1 30 30 H 1.09002 * 109.47442 * 59.99708 * 3 2 1 31 31 H 0.97001 * 120.00150 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.46976 * 180.02562 * 12 2 1 33 33 H 1.08996 * 109.46793 * 60.00843 * 12 2 1 34 34 H 0.97000 * 120.00346 * 0.02562 * 13 12 2 35 35 H 1.09002 * 109.70679 * 103.65729 * 21 20 19 36 36 H 1.08999 * 109.70927 * 224.28503 * 21 20 19 37 37 H 1.08997 * 109.46640 * 289.16177 * 22 21 20 38 38 H 1.09002 * 109.46030 * 169.18899 * 22 21 20 39 39 H 1.09000 * 109.42935 * 170.05859 * 23 22 21 40 40 H 1.08995 * 109.38953 * 50.19300 * 23 22 21 41 41 H 1.08995 * 109.69311 * 282.87341 * 24 19 18 42 42 H 1.08999 * 109.69529 * 43.42645 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6534 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9436 0.8301 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.1476 -2.2865 -3.6035 10 1 1.1680 -1.5868 -4.8164 11 1 3.1474 -0.1860 -4.8159 12 6 2.0399 -0.7211 1.2494 13 7 1.5516 -0.0305 2.4454 14 6 1.8767 -0.4912 3.6696 15 8 2.5751 -1.4790 3.7811 16 6 1.3827 0.2084 4.8807 17 7 0.6251 1.2824 4.9239 18 8 0.3891 1.6153 6.0676 19 6 0.9653 0.7956 6.9451 20 6 1.6273 -0.1400 6.2246 21 6 2.4266 -1.2679 6.8087 22 6 2.6965 -0.9504 8.2865 23 6 1.3877 -0.5447 8.9697 24 6 0.9359 0.8265 8.4505 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9564 0.8900 31 1 0.7096 1.1617 -3.4844 32 1 3.1300 -0.7208 1.2496 33 1 1.6767 -1.7488 1.2493 34 1 0.9936 0.7580 2.3564 35 1 1.8630 -2.1975 6.7292 36 1 3.3719 -1.3636 6.2746 37 1 3.4122 -0.1315 8.3573 38 1 3.1048 -1.8331 8.7788 39 1 1.5426 -0.4913 10.0473 40 1 0.6198 -1.2865 8.7502 41 1 1.6131 1.5988 8.8152 42 1 -0.0774 1.0345 8.7939 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457990141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:47 Heat of formation + Delta-G solvation = -13.718843 kcal Electronic energy + Delta-G solvation = -23562.604771 eV Core-core repulsion = 20123.428005 eV Total energy + Delta-G solvation = -3439.176765 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.22765 -40.87062 -38.66368 -38.17036 -35.30448 -34.82459 -32.79641 -31.99690 -31.16827 -27.89251 -27.66449 -27.23992 -25.61986 -24.59821 -23.71521 -21.79265 -20.71800 -20.56142 -19.01851 -18.75251 -18.03489 -17.58537 -16.79807 -16.56067 -16.40147 -15.98442 -15.19256 -14.90356 -14.85991 -14.78574 -14.59117 -14.29468 -14.17960 -14.06934 -13.30086 -13.24191 -13.17959 -12.76282 -12.61401 -12.48916 -12.34724 -12.17779 -11.90094 -11.84373 -11.66784 -11.57932 -11.43259 -11.31317 -11.19371 -10.77268 -10.45718 -10.16097 -10.12138 -8.06010 -6.22878 -0.01452 0.61492 1.40572 1.44111 1.54021 1.81102 1.98646 2.02317 2.44208 2.85790 3.17708 3.50809 3.64929 3.93559 4.01465 4.08030 4.24499 4.32255 4.38073 4.40050 4.49804 4.59422 4.61078 4.85756 4.90484 4.95242 4.95495 5.01541 5.02545 5.09241 5.16226 5.20231 5.21307 5.35345 5.42217 5.45720 5.57659 5.62615 6.03938 6.12152 6.31285 6.36376 6.80113 6.88666 7.00872 7.45305 8.93808 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.037745 B = 0.003241 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.635242 B = 8637.750372 C = 9149.852076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 C -0.121 4.121 4 C -0.528 4.528 5 H 0.050 0.950 6 C 0.027 3.973 7 N -0.901 5.901 8 Si 0.951 3.049 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.145 3.855 13 N -0.697 5.697 14 C 0.587 3.413 15 O -0.557 6.557 16 C -0.041 4.041 17 N -0.357 5.357 18 O 0.137 5.863 19 C -0.022 4.022 20 C -0.172 4.172 21 C -0.046 4.046 22 C -0.118 4.118 23 C -0.115 4.115 24 C -0.033 4.033 25 H 0.026 0.974 26 H 0.066 0.934 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.066 0.934 30 H 0.026 0.974 31 H 0.261 0.739 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.408 0.592 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.114 0.886 40 H 0.067 0.933 41 H 0.119 0.881 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.729 1.023 25.260 25.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.179 4.179 4 C -0.567 4.567 5 H 0.068 0.932 6 C -0.173 4.173 7 N -0.540 5.540 8 Si 0.777 3.223 9 H -0.197 1.197 10 H -0.207 1.207 11 H -0.207 1.207 12 C 0.023 3.977 13 N -0.348 5.348 14 C 0.371 3.629 15 O -0.435 6.435 16 C -0.198 4.198 17 N -0.058 5.058 18 O 0.061 5.939 19 C -0.087 4.087 20 C -0.178 4.178 21 C -0.084 4.084 22 C -0.156 4.156 23 C -0.153 4.153 24 C -0.071 4.071 25 H 0.045 0.955 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.245 0.755 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.132 0.868 40 H 0.086 0.914 41 H 0.137 0.863 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.830 1.170 24.133 24.175 hybrid contribution 0.415 -0.603 -1.420 1.597 sum -0.416 0.567 22.713 22.724 Atomic orbital electron populations 1.21687 0.97349 0.98794 1.00092 1.18363 0.93117 0.92968 0.90420 1.21687 0.98128 0.98014 1.00095 1.21267 1.31888 1.12313 0.91218 0.93185 1.25518 0.95031 0.95575 1.01204 1.69930 1.37007 1.23374 1.23692 0.85614 0.78116 0.78697 0.79834 1.19714 1.20690 1.20682 1.21482 0.97612 0.95350 0.83302 1.46114 1.51818 1.31668 1.05177 1.17239 0.80124 0.83337 0.82158 1.90720 1.39318 1.26741 1.86675 1.23039 1.03257 0.97063 0.96406 1.74582 1.16245 1.14497 1.00436 1.84645 1.54668 1.44312 1.10237 1.24998 0.96004 0.90412 0.97244 1.20983 1.04828 1.02478 0.89476 1.20058 0.97997 0.93419 0.96921 1.21733 0.98675 1.03153 0.92003 1.21702 0.96851 0.94763 1.01949 1.20641 1.06067 1.00881 0.79493 0.95506 0.91544 0.95898 0.95899 0.91540 0.95508 0.92940 0.93250 0.93245 0.75512 0.90505 0.91564 0.90935 0.89065 0.86794 0.91413 0.86314 0.86351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.77 8.08 71.98 0.58 -5.19 16 2 C 0.05 2.53 0.50 -52.93 -0.03 2.50 16 3 C -0.12 -5.77 8.08 71.98 0.58 -5.19 16 4 C -0.53 -28.52 8.01 25.60 0.21 -28.32 16 5 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 6 C 0.03 1.42 5.15 84.65 0.44 1.85 16 7 N -0.90 -49.23 9.35 21.45 0.20 -49.03 16 8 Si 0.95 43.12 29.54 68.60 2.03 45.15 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 C 0.15 6.55 4.50 86.38 0.39 6.94 16 13 N -0.70 -28.08 4.96 -465.51 -2.31 -30.39 16 14 C 0.59 23.23 7.85 86.93 0.68 23.92 16 15 O -0.56 -24.32 16.09 -3.70 -0.06 -24.38 16 16 C -0.04 -1.39 7.19 42.55 0.31 -1.08 16 17 N -0.36 -11.23 11.89 -48.95 -0.58 -11.82 16 18 O 0.14 3.40 11.18 78.72 0.88 4.28 16 19 C -0.02 -0.43 7.38 24.99 0.18 -0.25 16 20 C -0.17 -4.50 6.04 -20.05 -0.12 -4.62 16 21 C -0.05 -1.01 5.66 29.83 0.17 -0.85 16 22 C -0.12 -1.41 5.92 30.81 0.18 -1.23 16 23 C -0.12 -0.85 5.88 30.77 0.18 -0.67 16 24 C -0.03 -0.28 6.31 29.96 0.19 -0.09 16 25 H 0.03 1.12 6.86 -2.39 -0.02 1.11 16 26 H 0.07 3.45 6.07 -2.39 -0.01 3.44 16 27 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 3.46 6.07 -2.38 -0.01 3.44 16 30 H 0.03 1.12 6.86 -2.39 -0.02 1.10 16 31 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 32 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.41 15.78 5.94 -92.71 -0.55 15.23 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.07 1.74 7.84 -2.39 -0.02 1.72 16 37 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 38 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.07 0.60 8.12 -2.39 -0.02 0.58 16 41 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -64.90 336.08 4.58 -60.32 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.48 Total: 18.15 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 3.94 Total: -12.28 kcal Atomic # 7 Polarization: -88.55 SS G_CDS: -2.69 Total: -91.24 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: 0.82 Total: -20.10 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -64.90 4.58 -60.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457990141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.599 kcal (2) G-P(sol) polarization free energy of solvation -64.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds