Wall clock time and date at job start Tue Mar 31 2020 07:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99611 * 2 1 4 4 H 1.08999 * 109.47648 * 29.99527 * 3 2 1 5 5 C 1.52998 * 109.47205 * 149.99783 * 3 2 1 6 6 C 1.53002 * 109.47001 * 297.15495 * 5 3 2 7 7 C 1.53003 * 109.46930 * 173.73199 * 6 5 3 8 8 C 1.52996 * 109.47377 * 293.73022 * 6 5 3 9 9 C 1.50706 * 109.46948 * 269.99447 * 3 2 1 10 10 O 1.21274 * 119.99628 * 355.00167 * 9 3 2 11 11 N 1.34773 * 119.99825 * 174.99860 * 9 3 2 12 12 C 1.39480 * 119.99838 * 185.24051 * 11 9 3 13 13 C 1.38587 * 119.57908 * 185.50011 * 12 11 9 14 14 C 1.40810 * 118.79570 * 179.78308 * 13 12 11 15 15 C 1.41543 * 120.99820 * 180.26168 * 14 13 12 16 16 H 1.08005 * 119.99526 * 207.31301 * 15 14 13 17 17 C 1.40028 * 120.00056 * 27.30758 * 15 14 13 18 18 N 1.30736 * 120.00191 * 8.68062 * 17 15 14 19 19 Si 1.86804 * 119.99811 * 188.67836 * 17 15 14 20 20 H 1.48496 * 109.46817 * 90.00315 * 19 17 15 21 21 H 1.48501 * 109.47037 * 210.00053 * 19 17 15 22 22 H 1.48501 * 109.47285 * 330.00361 * 19 17 15 23 23 C 1.41184 * 118.00535 * 0.48039 * 14 13 12 24 24 C 1.37588 * 119.01135 * 359.75961 * 23 14 13 25 25 N 1.32076 * 121.11196 * 359.97438 * 24 23 14 26 26 H 1.09003 * 109.46613 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46909 * 60.00800 * 1 2 3 28 28 H 1.08997 * 109.47932 * 300.00098 * 1 2 3 29 29 H 1.08999 * 109.47437 * 57.16030 * 5 3 2 30 30 H 1.08996 * 109.47335 * 177.15912 * 5 3 2 31 31 H 1.08999 * 109.47216 * 53.73419 * 6 5 3 32 32 H 1.09003 * 109.47030 * 304.92789 * 7 6 5 33 33 H 1.08993 * 109.47409 * 64.92705 * 7 6 5 34 34 H 1.09002 * 109.46795 * 184.92939 * 7 6 5 35 35 H 1.09000 * 109.47064 * 59.99926 * 8 6 5 36 36 H 1.08998 * 109.47297 * 179.97438 * 8 6 5 37 37 H 1.08999 * 109.47271 * 300.00363 * 8 6 5 38 38 H 0.96998 * 120.00167 * 5.24872 * 11 9 3 39 39 H 1.08003 * 120.60462 * 359.97438 * 13 12 11 40 40 H 0.97000 * 120.00579 * 179.97438 * 18 17 15 41 41 H 1.07992 * 120.48849 * 179.77939 * 23 14 13 42 42 H 1.08002 * 119.44320 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5137 5 6 3.3588 1.2634 0.7213 6 6 3.1432 0.8660 2.1830 7 6 4.4994 0.6716 2.8640 8 6 2.3650 1.9697 2.9021 9 6 2.2145 1.7643 -1.4209 10 8 1.9792 1.0105 -2.3413 11 7 2.6588 3.0124 -1.6686 12 6 2.7440 3.4744 -2.9819 13 6 3.3083 4.7145 -3.2356 14 6 3.3902 5.1627 -4.5680 15 6 3.9625 6.4189 -4.8806 16 1 3.6500 6.9487 -5.7684 17 6 4.9336 6.9749 -4.0388 18 7 5.4352 6.2658 -3.0617 19 14 5.5125 8.7298 -4.3121 20 1 4.6590 9.6599 -3.5301 21 1 6.9234 8.8605 -3.8677 22 1 5.4152 9.0641 -5.7557 23 6 2.8801 4.3235 -5.5822 24 6 2.3330 3.1105 -5.2323 25 7 2.2800 2.7244 -3.9704 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3635 0.5138 0.8899 29 1 4.0068 0.5324 0.2378 30 1 3.8252 2.2476 0.6774 31 1 2.5779 -0.0649 2.2268 32 1 5.0887 -0.0517 2.3003 33 1 5.0288 1.6238 2.8979 34 1 4.3470 0.3042 3.8788 35 1 1.3988 2.1082 2.4170 36 1 2.2110 1.6864 3.9433 37 1 2.9303 2.9006 2.8583 38 1 2.9193 3.5893 -0.9337 39 1 3.6813 5.3248 -2.4264 40 1 6.1082 6.6507 -2.4788 41 1 2.9190 4.6290 -6.6173 42 1 1.9411 2.4628 -6.0026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516258940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:38 Heat of formation + Delta-G solvation = -60.817893 kcal Electronic energy + Delta-G solvation = -23494.680748 eV Core-core repulsion = 20053.461614 eV Total energy + Delta-G solvation = -3441.219133 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.98849 -38.44451 -37.05217 -35.94496 -34.28166 -33.71106 -30.72471 -30.36603 -28.36463 -27.32198 -26.29330 -26.00569 -24.46778 -21.98467 -21.44068 -20.08649 -19.65739 -17.72355 -17.32953 -16.72284 -15.89461 -15.45851 -15.15398 -14.71487 -14.59544 -14.22294 -14.18658 -13.89231 -13.77597 -13.45192 -12.93532 -12.61995 -12.58364 -12.44477 -12.34732 -12.14780 -11.74407 -11.43555 -11.39289 -11.23341 -10.97305 -10.92184 -10.71753 -10.57009 -10.37114 -10.20388 -10.13008 -9.74147 -9.41253 -8.99087 -7.97022 -7.74423 -7.03052 -6.76971 -4.64811 2.52456 2.77921 3.00690 3.04146 3.17246 3.38041 3.48552 3.84360 3.90256 4.64750 4.69541 4.77532 4.83451 4.97747 5.10918 5.22520 5.36729 5.50100 5.50842 5.59198 5.63034 5.66212 5.73370 5.75906 5.82704 5.89200 5.98221 6.08624 6.19308 6.31018 6.56454 6.62765 6.78238 6.93376 7.07571 7.11397 7.36854 7.45535 7.77627 7.93828 8.19655 8.41707 8.68907 8.74225 8.88238 9.66571 10.09247 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016728 B = 0.004187 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.399648 B = 6685.216038 C = 8002.020627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.075 3.925 4 H 0.084 0.916 5 C -0.109 4.109 6 C -0.094 4.094 7 C -0.147 4.147 8 C -0.152 4.152 9 C 0.474 3.526 10 O -0.467 6.467 11 N -0.657 5.657 12 C 0.335 3.665 13 C -0.238 4.238 14 C 0.142 3.858 15 C -0.456 4.456 16 H 0.081 0.919 17 C 0.075 3.925 18 N -0.797 5.797 19 Si 0.915 3.085 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.281 4.281 24 C 0.117 3.883 25 N -0.554 5.554 26 H 0.087 0.913 27 H 0.046 0.954 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.406 0.594 39 H 0.133 0.867 40 H 0.281 0.719 41 H 0.102 0.898 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.574 -4.328 12.536 13.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.013 3.987 4 H 0.102 0.898 5 C -0.147 4.147 6 C -0.113 4.113 7 C -0.204 4.204 8 C -0.209 4.209 9 C 0.257 3.743 10 O -0.336 6.336 11 N -0.305 5.305 12 C 0.110 3.890 13 C -0.263 4.263 14 C 0.134 3.866 15 C -0.487 4.487 16 H 0.099 0.901 17 C -0.142 4.142 18 N -0.423 5.423 19 Si 0.739 3.261 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.305 4.305 24 C -0.037 4.037 25 N -0.273 5.273 26 H 0.105 0.895 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.241 0.759 39 H 0.150 0.850 40 H 0.092 0.908 41 H 0.121 0.879 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.878 -5.946 12.309 14.209 hybrid contribution 0.709 2.186 -0.003 2.298 sum -3.170 -3.761 12.306 13.252 Atomic orbital electron populations 1.22824 0.80975 1.02883 0.99967 1.87953 1.19769 1.25167 1.94405 1.22151 0.97130 0.86698 0.92719 0.89831 1.21746 0.94543 1.03321 0.95079 1.21071 0.96979 0.99619 0.93592 1.21835 0.96629 1.01844 1.00130 1.21936 1.00087 0.98726 1.00142 1.21358 0.78893 0.82204 0.91813 1.90777 1.45502 1.52009 1.45287 1.43512 1.65007 1.14968 1.07054 1.18230 0.95872 0.90979 0.83899 1.21673 1.09322 0.96424 0.98893 1.17593 0.87014 0.91949 0.90056 1.19586 1.18644 1.02366 1.08120 0.90066 1.25937 0.95150 0.99471 0.93682 1.69735 1.21904 1.36594 1.14050 0.86197 0.78220 0.81636 0.80008 1.19257 1.20188 1.18540 1.21941 1.12467 0.97285 0.98815 1.21757 0.96308 0.93914 0.91762 1.67180 1.25257 1.35320 0.99518 0.89493 0.93512 0.94290 0.90282 0.89950 0.90233 0.92537 0.92587 0.92797 0.92839 0.92677 0.92381 0.75908 0.84961 0.90816 0.87937 0.85888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.81 101.05 1.09 1.46 16 2 O -0.36 -5.36 9.23 -55.09 -0.51 -5.87 16 3 C 0.07 1.06 2.38 -27.88 -0.07 1.00 16 4 H 0.08 0.99 6.13 -51.93 -0.32 0.67 16 5 C -0.11 -1.32 4.34 -26.73 -0.12 -1.44 16 6 C -0.09 -0.93 2.86 -90.62 -0.26 -1.19 16 7 C -0.15 -1.31 9.19 37.16 0.34 -0.97 16 8 C -0.15 -1.30 8.97 37.16 0.33 -0.97 16 9 C 0.47 9.20 7.08 -10.98 -0.08 9.12 16 10 O -0.47 -11.24 14.80 -14.30 -0.21 -11.46 16 11 N -0.66 -12.93 5.33 -11.49 -0.06 -12.99 16 12 C 0.33 8.17 7.40 -154.70 -1.14 7.02 16 13 C -0.24 -6.01 8.60 -38.48 -0.33 -6.34 16 14 C 0.14 3.74 5.60 -106.55 -0.60 3.14 16 15 C -0.46 -11.67 9.13 -37.65 -0.34 -12.02 16 16 H 0.08 1.99 7.86 -52.48 -0.41 1.58 16 17 C 0.08 1.81 5.33 -17.35 -0.09 1.72 16 18 N -0.80 -19.53 10.71 55.55 0.60 -18.93 16 19 Si 0.92 17.87 29.57 -169.99 -5.03 12.84 16 20 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 21 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 23 C -0.28 -6.94 9.90 -38.70 -0.38 -7.32 16 24 C 0.12 2.84 11.15 -17.68 -0.20 2.64 16 25 N -0.55 -14.32 7.89 -12.52 -0.10 -14.42 16 26 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.08 0.92 7.69 -51.93 -0.40 0.52 16 31 H 0.08 0.84 7.59 -51.93 -0.39 0.45 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.45 6.55 -51.93 -0.34 0.11 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.41 6.49 8.26 -40.82 -0.34 6.15 16 39 H 0.13 3.31 6.15 -52.48 -0.32 2.98 16 40 H 0.28 6.23 8.29 -40.82 -0.34 5.90 16 41 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 42 H 0.12 2.62 8.06 -52.49 -0.42 2.19 16 LS Contribution 349.46 15.07 5.27 5.27 Total: -1.00 -31.86 349.46 -8.19 -40.05 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -6.31 Total: 9.65 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -1.84 Total: -4.14 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 0.43 Total: -46.34 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.72 Total: -17.32 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.86 -8.19 -40.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516258940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.768 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds