Wall clock time and date at job start Tue Mar 31 2020 07:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99611 * 2 1 4 4 H 1.08999 * 109.47648 * 29.99527 * 3 2 1 5 5 C 1.52998 * 109.47205 * 149.99783 * 3 2 1 6 6 C 1.53002 * 109.47001 * 297.15495 * 5 3 2 7 7 C 1.53003 * 109.46930 * 173.73199 * 6 5 3 8 8 C 1.52996 * 109.47377 * 293.73022 * 6 5 3 9 9 C 1.50706 * 109.46948 * 269.99447 * 3 2 1 10 10 O 1.21274 * 119.99628 * 355.00167 * 9 3 2 11 11 N 1.34773 * 119.99825 * 174.99860 * 9 3 2 12 12 C 1.39480 * 119.99838 * 185.24051 * 11 9 3 13 13 C 1.38587 * 119.57908 * 185.50011 * 12 11 9 14 14 C 1.40810 * 118.79570 * 179.78308 * 13 12 11 15 15 C 1.41543 * 120.99820 * 180.26168 * 14 13 12 16 16 H 1.08005 * 119.99526 * 207.31301 * 15 14 13 17 17 C 1.40028 * 120.00056 * 27.30758 * 15 14 13 18 18 N 1.30736 * 120.00191 * 8.68062 * 17 15 14 19 19 Si 1.86804 * 119.99811 * 188.67836 * 17 15 14 20 20 H 1.48496 * 109.46817 * 90.00315 * 19 17 15 21 21 H 1.48501 * 109.47037 * 210.00053 * 19 17 15 22 22 H 1.48501 * 109.47285 * 330.00361 * 19 17 15 23 23 C 1.41184 * 118.00535 * 0.48039 * 14 13 12 24 24 C 1.37588 * 119.01135 * 359.75961 * 23 14 13 25 25 N 1.32076 * 121.11196 * 359.97438 * 24 23 14 26 26 H 1.09003 * 109.46613 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46909 * 60.00800 * 1 2 3 28 28 H 1.08997 * 109.47932 * 300.00098 * 1 2 3 29 29 H 1.08999 * 109.47437 * 57.16030 * 5 3 2 30 30 H 1.08996 * 109.47335 * 177.15912 * 5 3 2 31 31 H 1.08999 * 109.47216 * 53.73419 * 6 5 3 32 32 H 1.09003 * 109.47030 * 304.92789 * 7 6 5 33 33 H 1.08993 * 109.47409 * 64.92705 * 7 6 5 34 34 H 1.09002 * 109.46795 * 184.92939 * 7 6 5 35 35 H 1.09000 * 109.47064 * 59.99926 * 8 6 5 36 36 H 1.08998 * 109.47297 * 179.97438 * 8 6 5 37 37 H 1.08999 * 109.47271 * 300.00363 * 8 6 5 38 38 H 0.96998 * 120.00167 * 5.24872 * 11 9 3 39 39 H 1.08003 * 120.60462 * 359.97438 * 13 12 11 40 40 H 0.97000 * 120.00579 * 179.97438 * 18 17 15 41 41 H 1.07992 * 120.48849 * 179.77939 * 23 14 13 42 42 H 1.08002 * 119.44320 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5137 5 6 3.3588 1.2634 0.7213 6 6 3.1432 0.8660 2.1830 7 6 4.4994 0.6716 2.8640 8 6 2.3650 1.9697 2.9021 9 6 2.2145 1.7643 -1.4209 10 8 1.9792 1.0105 -2.3413 11 7 2.6588 3.0124 -1.6686 12 6 2.7440 3.4744 -2.9819 13 6 3.3083 4.7145 -3.2356 14 6 3.3902 5.1627 -4.5680 15 6 3.9625 6.4189 -4.8806 16 1 3.6500 6.9487 -5.7684 17 6 4.9336 6.9749 -4.0388 18 7 5.4352 6.2658 -3.0617 19 14 5.5125 8.7298 -4.3121 20 1 4.6590 9.6599 -3.5301 21 1 6.9234 8.8605 -3.8677 22 1 5.4152 9.0641 -5.7557 23 6 2.8801 4.3235 -5.5822 24 6 2.3330 3.1105 -5.2323 25 7 2.2800 2.7244 -3.9704 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3635 0.5138 0.8899 29 1 4.0068 0.5324 0.2378 30 1 3.8252 2.2476 0.6774 31 1 2.5779 -0.0649 2.2268 32 1 5.0887 -0.0517 2.3003 33 1 5.0288 1.6238 2.8979 34 1 4.3470 0.3042 3.8788 35 1 1.3988 2.1082 2.4170 36 1 2.2110 1.6864 3.9433 37 1 2.9303 2.9006 2.8583 38 1 2.9193 3.5893 -0.9337 39 1 3.6813 5.3248 -2.4264 40 1 6.1082 6.6507 -2.4788 41 1 2.9190 4.6290 -6.6173 42 1 1.9411 2.4628 -6.0026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516258940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:37 Heat of formation + Delta-G solvation = -79.221877 kcal Electronic energy + Delta-G solvation = -23495.478804 eV Core-core repulsion = 20053.461614 eV Total energy + Delta-G solvation = -3442.017190 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.51734 -40.05331 -38.50211 -36.86758 -36.08577 -35.46390 -32.50132 -31.73464 -30.00730 -27.99623 -27.92503 -27.27769 -25.68790 -23.86007 -23.11657 -21.32606 -20.87891 -19.50082 -18.82634 -17.99385 -17.36711 -17.02506 -16.57303 -16.13093 -16.04678 -15.72741 -15.51837 -15.46247 -14.88832 -14.72856 -14.40189 -14.31338 -14.16262 -13.56292 -13.26950 -13.15321 -12.95650 -12.88012 -12.71211 -12.63058 -12.30765 -12.14230 -11.88990 -11.85553 -11.56348 -11.50055 -11.45617 -11.44724 -11.19668 -10.48668 -9.91795 -9.59501 -8.87873 -8.59894 -6.59388 0.70064 0.98840 1.41960 1.53083 1.55241 1.80090 2.00319 2.20934 2.76315 2.82104 3.47891 3.70410 3.81406 3.85251 4.05599 4.11318 4.24835 4.37578 4.49646 4.55256 4.68548 4.72974 4.80367 4.81327 4.83869 4.89926 4.90279 5.00660 5.07565 5.08876 5.12109 5.23617 5.33623 5.45955 5.48116 5.56021 5.61714 5.88822 5.98122 6.16555 6.46996 6.56750 6.78086 6.83345 7.26286 7.80429 8.29664 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016728 B = 0.004187 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.399648 B = 6685.216038 C = 8002.020627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.374 6.374 3 C 0.088 3.912 4 H 0.115 0.885 5 C -0.107 4.107 6 C -0.087 4.087 7 C -0.147 4.147 8 C -0.151 4.151 9 C 0.470 3.530 10 O -0.519 6.519 11 N -0.648 5.648 12 C 0.330 3.670 13 C -0.253 4.253 14 C 0.113 3.887 15 C -0.484 4.484 16 H 0.083 0.917 17 C 0.038 3.962 18 N -0.819 5.819 19 Si 0.990 3.010 20 H -0.259 1.259 21 H -0.268 1.268 22 H -0.260 1.260 23 C -0.295 4.295 24 C 0.110 3.890 25 N -0.580 5.580 26 H 0.103 0.897 27 H 0.023 0.977 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.422 0.578 39 H 0.131 0.869 40 H 0.292 0.708 41 H 0.117 0.883 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.384 -3.241 14.390 15.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.291 6.291 3 C 0.027 3.973 4 H 0.133 0.867 5 C -0.145 4.145 6 C -0.106 4.106 7 C -0.204 4.204 8 C -0.208 4.208 9 C 0.256 3.744 10 O -0.391 6.391 11 N -0.297 5.297 12 C 0.104 3.896 13 C -0.279 4.279 14 C 0.105 3.895 15 C -0.515 4.515 16 H 0.101 0.899 17 C -0.179 4.179 18 N -0.445 5.445 19 Si 0.811 3.189 20 H -0.183 1.183 21 H -0.192 1.192 22 H -0.184 1.184 23 C -0.318 4.318 24 C -0.043 4.043 25 N -0.300 5.300 26 H 0.121 0.879 27 H 0.042 0.958 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.260 0.740 39 H 0.149 0.851 40 H 0.103 0.897 41 H 0.135 0.865 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.693 -4.867 14.204 15.462 hybrid contribution 0.648 1.790 -0.575 1.989 sum -3.046 -3.077 13.629 14.300 Atomic orbital electron populations 1.23014 0.79575 1.04232 1.00307 1.87946 1.21428 1.25581 1.94139 1.22200 0.98928 0.87097 0.89101 0.86728 1.21792 0.92926 1.03397 0.96351 1.21017 0.97723 0.99899 0.91946 1.21832 0.95964 1.01930 1.00653 1.21941 0.99909 0.98283 1.00697 1.22460 0.77010 0.81205 0.93708 1.90743 1.47624 1.53245 1.47484 1.43536 1.64646 1.15625 1.05939 1.18500 0.94939 0.90719 0.85419 1.21668 1.10435 0.97058 0.98695 1.18030 0.87663 0.92849 0.90954 1.19880 1.19749 1.02767 1.09135 0.89862 1.26807 0.94550 1.03554 0.92939 1.69770 1.21963 1.38390 1.14380 0.85070 0.78016 0.75920 0.79919 1.18318 1.19213 1.18407 1.22126 1.12894 0.97467 0.99362 1.22195 0.95816 0.94207 0.92118 1.67302 1.26352 1.36048 1.00316 0.87859 0.95838 0.91105 0.92250 0.88973 0.90786 0.93315 0.92218 0.91409 0.92623 0.91413 0.91904 0.73961 0.85126 0.89743 0.86543 0.83432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 10.81 113.37 1.23 1.79 16 2 O -0.37 -10.90 9.23 -129.99 -1.20 -12.10 16 3 C 0.09 2.41 2.38 29.85 0.07 2.48 16 4 H 0.12 2.43 6.13 -2.39 -0.01 2.41 16 5 C -0.11 -2.46 4.34 30.59 0.13 -2.33 16 6 C -0.09 -1.54 2.86 -10.79 -0.03 -1.57 16 7 C -0.15 -2.32 9.19 71.98 0.66 -1.66 16 8 C -0.15 -2.13 8.97 71.98 0.65 -1.48 16 9 C 0.47 18.33 7.08 87.66 0.62 18.95 16 10 O -0.52 -25.60 14.80 15.98 0.24 -25.36 16 11 N -0.65 -25.62 5.33 -308.66 -1.65 -27.27 16 12 C 0.33 16.41 7.40 132.75 0.98 17.39 16 13 C -0.25 -13.07 8.60 22.98 0.20 -12.87 16 14 C 0.11 6.08 5.60 -21.11 -0.12 5.96 16 15 C -0.48 -25.03 9.13 23.52 0.21 -24.82 16 16 H 0.08 4.12 7.86 -2.91 -0.02 4.09 16 17 C 0.04 1.78 5.33 85.29 0.45 2.24 16 18 N -0.82 -39.87 10.71 21.84 0.23 -39.63 16 19 Si 0.99 35.65 29.57 68.60 2.03 37.68 16 20 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 21 H -0.27 -9.18 7.11 99.48 0.71 -8.47 16 22 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 23 C -0.29 -14.82 9.90 22.84 0.23 -14.59 16 24 C 0.11 5.46 11.15 84.50 0.94 6.40 16 25 N -0.58 -30.67 7.89 -193.54 -1.53 -32.20 16 26 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 1.17 8.08 -2.39 -0.02 1.15 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.09 1.92 7.69 -2.39 -0.02 1.90 16 31 H 0.07 1.41 7.59 -2.39 -0.02 1.39 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.05 0.76 6.55 -2.39 -0.02 0.74 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.42 13.30 8.26 -92.71 -0.77 12.54 16 39 H 0.13 6.64 6.15 -2.91 -0.02 6.62 16 40 H 0.29 12.66 8.29 -92.71 -0.77 11.89 16 41 H 0.12 5.33 8.06 -2.91 -0.02 5.31 16 42 H 0.15 6.32 8.06 -2.91 -0.02 6.29 16 Total: -1.00 -70.13 349.46 4.61 -65.52 By element: Atomic # 1 Polarization: 37.21 SS G_CDS: 0.26 Total: 37.47 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 6.23 Total: -4.12 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -2.94 Total: -99.10 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -0.96 Total: -37.45 kcal Atomic # 14 Polarization: 35.65 SS G_CDS: 2.03 Total: 37.68 kcal Total: -70.13 4.61 -65.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516258940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.698 kcal (2) G-P(sol) polarization free energy of solvation -70.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds