Wall clock time and date at job start Tue Mar 31 2020 06:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50696 * 109.47058 * 2 1 4 4 O 1.34256 * 126.52201 * 269.68283 * 3 2 1 5 5 C 1.34050 * 108.22864 * 180.26360 * 4 3 2 6 6 N 1.29936 * 109.24334 * 0.02562 * 5 4 3 7 7 C 1.36067 * 108.47399 * 359.97438 * 6 5 4 8 8 C 1.47420 * 126.44837 * 179.97438 * 7 6 5 9 9 O 1.21612 * 120.00485 * 186.43728 * 8 7 6 10 10 N 1.34781 * 119.99977 * 6.43651 * 8 7 6 11 11 C 1.46923 * 120.62997 * 6.86366 * 10 8 7 12 12 C 1.53618 * 108.54677 * 126.36734 * 11 10 8 13 13 C 1.53046 * 109.24123 * 54.85523 * 12 11 10 14 14 C 1.53003 * 109.44776 * 178.50003 * 13 12 11 15 15 C 1.50708 * 109.46973 * 295.06061 * 14 13 12 16 16 H 1.08004 * 119.99736 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99619 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00391 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99592 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46745 * 90.00257 * 19 17 15 21 21 H 1.48503 * 109.47164 * 210.00164 * 19 17 15 22 22 H 1.48496 * 109.47401 * 330.00493 * 19 17 15 23 23 C 1.53041 * 109.53605 * 298.51180 * 13 12 11 24 24 C 1.46927 * 120.63137 * 187.13961 * 10 8 7 25 25 H 1.09000 * 109.46977 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47371 * 300.00513 * 1 2 3 27 27 H 1.09003 * 109.46561 * 60.00416 * 1 2 3 28 28 H 1.08997 * 109.47371 * 239.99487 * 2 1 3 29 29 H 1.09003 * 109.46561 * 119.99584 * 2 1 3 30 30 H 1.08003 * 125.38004 * 180.02562 * 5 4 3 31 31 H 1.09006 * 109.58465 * 246.20245 * 11 10 8 32 32 H 1.08998 * 109.58649 * 6.62416 * 11 10 8 33 33 H 1.08997 * 109.63515 * 294.86610 * 12 11 10 34 34 H 1.08996 * 109.43326 * 174.72280 * 12 11 10 35 35 H 1.08997 * 109.45729 * 58.53699 * 13 12 11 36 36 H 1.08994 * 109.47195 * 55.06078 * 14 13 12 37 37 H 1.09000 * 109.46912 * 175.06243 * 14 13 12 38 38 H 0.97000 * 119.99801 * 179.97438 * 18 17 15 39 39 H 1.08997 * 109.49870 * 301.41548 * 23 13 12 40 40 H 1.08995 * 109.49329 * 181.31561 * 23 13 12 41 41 H 1.09000 * 109.58382 * 353.37557 * 24 10 8 42 42 H 1.09005 * 109.58491 * 113.65777 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.3043 2.1721 -1.0789 5 6 2.7319 3.3709 -0.6581 6 7 2.7362 3.3922 0.6410 7 6 2.3027 2.1844 1.0935 8 6 2.1545 1.7790 2.5031 9 8 1.8676 0.6297 2.7784 10 7 2.3370 2.6821 3.4868 11 6 2.5353 4.1032 3.1710 12 6 1.5097 4.9277 3.9636 13 6 1.6339 4.5916 5.4515 14 6 0.6399 5.4377 6.2496 15 6 1.0139 6.8932 6.1354 16 1 1.8743 7.1854 5.5516 17 6 0.2571 7.8516 6.7754 18 7 -0.7909 7.4958 7.4859 19 14 0.7212 9.6556 6.6344 20 1 0.0347 10.2530 5.4610 21 1 0.3066 10.3712 7.8678 22 1 2.1912 9.7766 6.4624 23 6 1.3293 3.1075 5.6681 24 6 2.3474 2.2633 4.8951 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.8935 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.0263 4.1897 -1.2979 31 1 3.5449 4.4026 3.4525 32 1 2.3886 4.2641 2.1030 33 1 0.5033 4.6890 3.6195 34 1 1.7038 5.9896 3.8131 35 1 2.6475 4.8074 5.7891 36 1 -0.3645 5.2885 5.8534 37 1 0.6657 5.1370 7.2970 38 1 -1.3230 8.1701 7.9364 39 1 0.3247 2.8859 5.3079 40 1 1.3951 2.8740 6.7307 41 1 2.0766 1.2097 4.9650 42 1 3.3426 2.4134 5.3136 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519544570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:08 Heat of formation + Delta-G solvation = -23.395479 kcal Electronic energy + Delta-G solvation = -23778.616482 eV Core-core repulsion = 20339.020106 eV Total energy + Delta-G solvation = -3439.596376 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.65403 -39.79011 -37.30571 -35.18674 -34.37571 -33.79164 -32.06639 -30.66979 -29.44795 -27.97347 -25.35723 -24.18417 -23.52793 -22.89173 -21.90871 -21.25050 -19.93014 -18.96116 -17.44776 -17.04619 -16.48456 -16.24210 -15.77125 -15.12518 -14.90341 -14.67102 -14.49079 -13.79285 -13.74046 -13.45694 -13.18933 -12.96014 -12.83791 -12.69093 -12.31393 -11.93199 -11.75685 -11.52847 -11.37144 -11.14459 -10.96834 -10.85668 -10.66975 -10.57935 -10.29761 -10.04851 -9.85360 -9.45121 -9.17601 -9.04352 -8.91273 -8.32714 -8.24875 -5.97040 -3.98671 0.95828 1.89480 2.36196 3.12496 3.31332 3.32723 3.39296 3.42211 3.87375 4.38186 4.47721 4.58191 4.83156 4.97039 5.07400 5.31107 5.34558 5.38538 5.50683 5.55498 5.60067 5.61328 5.68477 5.74595 5.79516 5.88920 5.98281 6.05255 6.13373 6.44745 6.45453 6.48534 6.64080 6.82328 7.05220 7.07836 7.18496 7.27169 7.63539 7.70708 7.86048 8.03232 8.23786 8.46178 9.07877 9.64871 11.14312 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022358 B = 0.003705 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.021094 B = 7555.265571 C = 8174.158730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.047 4.047 3 C 0.041 3.959 4 O -0.200 6.200 5 C 0.171 3.829 6 N -0.456 5.456 7 C -0.066 4.066 8 C 0.597 3.403 9 O -0.547 6.547 10 N -0.585 5.585 11 C 0.076 3.924 12 C -0.116 4.116 13 C -0.082 4.082 14 C 0.027 3.973 15 C -0.514 4.514 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.889 3.111 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.128 4.128 24 C 0.111 3.889 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.255 0.745 31 H 0.060 0.940 32 H 0.130 0.870 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.015 0.985 37 H 0.015 0.985 38 H 0.259 0.741 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.547 -12.678 -17.106 22.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.084 4.084 3 C -0.015 4.015 4 O -0.086 6.086 5 C -0.056 4.056 6 N -0.185 5.185 7 C -0.185 4.185 8 C 0.384 3.616 9 O -0.427 6.427 10 N -0.315 5.315 11 C -0.046 4.046 12 C -0.154 4.154 13 C -0.101 4.101 14 C -0.010 4.010 15 C -0.553 4.553 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.166 4.166 24 C -0.010 4.010 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.137 0.863 30 H 0.270 0.730 31 H 0.078 0.922 32 H 0.147 0.853 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.445 -12.684 -16.472 21.766 hybrid contribution 0.077 1.013 -0.402 1.093 sum 6.522 -11.671 -16.875 21.529 Atomic orbital electron populations 1.21717 0.93072 1.02886 1.02576 1.20402 0.97106 0.85430 1.05437 1.23776 0.98855 0.95631 0.83267 1.84364 1.63592 1.24329 1.36318 1.28213 0.98762 0.87015 0.91627 1.70675 1.17774 1.20609 1.09399 1.21529 1.09995 0.91288 0.95695 1.16775 0.77340 0.84842 0.82593 1.90730 1.50078 1.18893 1.82951 1.47968 1.68740 1.08796 1.06017 1.22893 0.99304 0.78118 1.04302 1.21956 0.97870 1.00136 0.95432 1.21219 1.00937 0.92729 0.95225 1.19127 0.93599 0.93640 0.94584 1.21254 1.11924 0.91753 1.30339 0.92583 1.25022 0.95145 0.98887 0.95441 1.69970 1.17330 1.33477 1.32809 0.86647 0.78752 0.85494 0.77424 1.20755 1.21330 1.19889 1.22009 0.98448 0.96647 0.99495 1.21737 0.99832 0.99973 0.79506 0.91050 0.91705 0.92612 0.89852 0.86303 0.72960 0.92163 0.85336 0.92739 0.89923 0.92424 0.96706 0.96649 0.93100 0.92092 0.91120 0.89611 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.90 37.16 0.37 -0.95 16 2 C -0.05 -0.45 6.00 -27.88 -0.17 -0.62 16 3 C 0.04 0.48 6.69 -35.08 -0.23 0.25 16 4 O -0.20 -2.02 10.73 6.51 0.07 -1.95 16 5 C 0.17 1.54 13.19 51.96 0.69 2.22 16 6 N -0.46 -5.81 7.81 -11.48 -0.09 -5.90 16 7 C -0.07 -0.93 6.68 -83.02 -0.55 -1.48 16 8 C 0.60 9.71 7.67 -12.52 -0.10 9.61 16 9 O -0.55 -9.44 14.21 5.27 0.07 -9.37 16 10 N -0.58 -9.57 2.97 -173.77 -0.52 -10.09 16 11 C 0.08 1.22 6.14 -3.49 -0.02 1.20 16 12 C -0.12 -2.19 5.21 -26.39 -0.14 -2.33 16 13 C -0.08 -1.68 2.10 -90.57 -0.19 -1.87 16 14 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 15 C -0.51 -14.25 8.39 -34.44 -0.29 -14.54 16 16 H 0.06 1.50 7.06 -52.48 -0.37 1.13 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 19 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.13 -2.26 5.36 -26.61 -0.14 -2.40 16 24 C 0.11 1.76 6.44 -3.71 -0.02 1.74 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.12 1.30 6.38 -51.93 -0.33 0.97 16 30 H 0.25 0.91 8.06 -52.48 -0.42 0.49 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.13 2.00 4.09 -61.48 -0.25 1.74 16 33 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.08 1.64 6.91 -51.93 -0.36 1.28 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.09 1.33 7.00 -51.93 -0.36 0.97 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 339.02 15.07 5.11 5.11 Total: -1.00 -32.80 339.02 -6.97 -39.76 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -6.31 Total: -0.77 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -1.02 Total: -7.09 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.13 Total: -42.22 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.14 Total: -11.32 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.80 -6.97 -39.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519544570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.368 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds