Wall clock time and date at job start Tue Mar 31 2020 06:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50696 * 109.47058 * 2 1 4 4 O 1.34256 * 126.52201 * 269.68283 * 3 2 1 5 5 C 1.34050 * 108.22864 * 180.26360 * 4 3 2 6 6 N 1.29936 * 109.24334 * 0.02562 * 5 4 3 7 7 C 1.36067 * 108.47399 * 359.97438 * 6 5 4 8 8 C 1.47420 * 126.44837 * 179.97438 * 7 6 5 9 9 O 1.21612 * 120.00485 * 186.43728 * 8 7 6 10 10 N 1.34781 * 119.99977 * 6.43651 * 8 7 6 11 11 C 1.46923 * 120.62997 * 6.86366 * 10 8 7 12 12 C 1.53618 * 108.54677 * 126.36734 * 11 10 8 13 13 C 1.53046 * 109.24123 * 54.85523 * 12 11 10 14 14 C 1.53003 * 109.44776 * 178.50003 * 13 12 11 15 15 C 1.50708 * 109.46973 * 295.06061 * 14 13 12 16 16 H 1.08004 * 119.99736 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99619 * 179.97438 * 15 14 13 18 18 N 1.31518 * 120.00391 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99592 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46745 * 90.00257 * 19 17 15 21 21 H 1.48503 * 109.47164 * 210.00164 * 19 17 15 22 22 H 1.48496 * 109.47401 * 330.00493 * 19 17 15 23 23 C 1.53041 * 109.53605 * 298.51180 * 13 12 11 24 24 C 1.46927 * 120.63137 * 187.13961 * 10 8 7 25 25 H 1.09000 * 109.46977 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47371 * 300.00513 * 1 2 3 27 27 H 1.09003 * 109.46561 * 60.00416 * 1 2 3 28 28 H 1.08997 * 109.47371 * 239.99487 * 2 1 3 29 29 H 1.09003 * 109.46561 * 119.99584 * 2 1 3 30 30 H 1.08003 * 125.38004 * 180.02562 * 5 4 3 31 31 H 1.09006 * 109.58465 * 246.20245 * 11 10 8 32 32 H 1.08998 * 109.58649 * 6.62416 * 11 10 8 33 33 H 1.08997 * 109.63515 * 294.86610 * 12 11 10 34 34 H 1.08996 * 109.43326 * 174.72280 * 12 11 10 35 35 H 1.08997 * 109.45729 * 58.53699 * 13 12 11 36 36 H 1.08994 * 109.47195 * 55.06078 * 14 13 12 37 37 H 1.09000 * 109.46912 * 175.06243 * 14 13 12 38 38 H 0.97000 * 119.99801 * 179.97438 * 18 17 15 39 39 H 1.08997 * 109.49870 * 301.41548 * 23 13 12 40 40 H 1.08995 * 109.49329 * 181.31561 * 23 13 12 41 41 H 1.09000 * 109.58382 * 353.37557 * 24 10 8 42 42 H 1.09005 * 109.58491 * 113.65777 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.3043 2.1721 -1.0789 5 6 2.7319 3.3709 -0.6581 6 7 2.7362 3.3922 0.6410 7 6 2.3027 2.1844 1.0935 8 6 2.1545 1.7790 2.5031 9 8 1.8676 0.6297 2.7784 10 7 2.3370 2.6821 3.4868 11 6 2.5353 4.1032 3.1710 12 6 1.5097 4.9277 3.9636 13 6 1.6339 4.5916 5.4515 14 6 0.6399 5.4377 6.2496 15 6 1.0139 6.8932 6.1354 16 1 1.8743 7.1854 5.5516 17 6 0.2571 7.8516 6.7754 18 7 -0.7909 7.4958 7.4859 19 14 0.7212 9.6556 6.6344 20 1 0.0347 10.2530 5.4610 21 1 0.3066 10.3712 7.8678 22 1 2.1912 9.7766 6.4624 23 6 1.3293 3.1075 5.6681 24 6 2.3474 2.2633 4.8951 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 1.8935 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.0263 4.1897 -1.2979 31 1 3.5449 4.4026 3.4525 32 1 2.3886 4.2641 2.1030 33 1 0.5033 4.6890 3.6195 34 1 1.7038 5.9896 3.8131 35 1 2.6475 4.8074 5.7891 36 1 -0.3645 5.2885 5.8534 37 1 0.6657 5.1370 7.2970 38 1 -1.3230 8.1701 7.9364 39 1 0.3247 2.8859 5.3079 40 1 1.3951 2.8740 6.7307 41 1 2.0766 1.2097 4.9650 42 1 3.3426 2.4134 5.3136 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519544570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:07 Heat of formation + Delta-G solvation = -44.419978 kcal Electronic energy + Delta-G solvation = -23779.528173 eV Core-core repulsion = 20339.020106 eV Total energy + Delta-G solvation = -3440.508066 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.49227 -41.06884 -38.74490 -36.17862 -35.58678 -35.06288 -33.93288 -32.06708 -30.42938 -29.70277 -26.81655 -25.39182 -24.58154 -24.22210 -23.28966 -22.42488 -21.25364 -20.29640 -18.60866 -18.39567 -17.91397 -17.51217 -16.84465 -16.53311 -16.15790 -15.94666 -15.53283 -15.26245 -15.01895 -14.60453 -14.49600 -14.47871 -14.27727 -13.96186 -13.59386 -13.37499 -13.00132 -12.81420 -12.63630 -12.53670 -12.48123 -12.35907 -12.22169 -12.05416 -11.83510 -11.64153 -11.34541 -11.19469 -10.85791 -10.60613 -10.45663 -10.04660 -9.57604 -8.16353 -6.26138 0.04033 1.03378 1.41243 1.42307 1.53303 1.55938 1.96897 2.19424 2.43039 3.04966 3.17078 3.54171 3.62826 3.94835 4.06265 4.07287 4.12201 4.21283 4.24176 4.29618 4.41346 4.52832 4.61003 4.66219 4.78235 4.85900 4.89208 4.93647 4.96676 5.05300 5.12552 5.24080 5.25682 5.30505 5.36892 5.44306 5.55049 5.66892 5.81929 5.88643 6.26965 6.30605 6.51412 6.89995 7.01855 7.42504 8.95752 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.022358 B = 0.003705 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.021094 B = 7555.265571 C = 8174.158730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.047 4.047 3 C 0.049 3.951 4 O -0.194 6.194 5 C 0.199 3.801 6 N -0.492 5.492 7 C -0.100 4.100 8 C 0.592 3.408 9 O -0.565 6.565 10 N -0.593 5.593 11 C 0.088 3.912 12 C -0.108 4.108 13 C -0.075 4.075 14 C 0.033 3.967 15 C -0.528 4.528 16 H 0.065 0.935 17 C -0.003 4.003 18 N -0.937 5.937 19 Si 0.962 3.038 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.260 1.260 23 C -0.120 4.120 24 C 0.118 3.882 25 H 0.089 0.911 26 H 0.035 0.965 27 H 0.065 0.935 28 H 0.113 0.887 29 H 0.103 0.897 30 H 0.306 0.694 31 H 0.069 0.931 32 H 0.142 0.858 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.062 0.938 36 H -0.017 1.017 37 H -0.012 1.012 38 H 0.261 0.739 39 H 0.045 0.955 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.177 -12.287 -19.626 24.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.084 4.084 3 C -0.008 4.008 4 O -0.081 6.081 5 C -0.029 4.029 6 N -0.220 5.220 7 C -0.218 4.218 8 C 0.381 3.619 9 O -0.446 6.446 10 N -0.324 5.324 11 C -0.033 4.033 12 C -0.146 4.146 13 C -0.093 4.093 14 C -0.004 4.004 15 C -0.566 4.566 16 H 0.083 0.917 17 C -0.200 4.200 18 N -0.578 5.578 19 Si 0.786 3.214 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.184 1.184 23 C -0.158 4.158 24 C -0.004 4.004 25 H 0.108 0.892 26 H 0.054 0.946 27 H 0.084 0.916 28 H 0.131 0.869 29 H 0.121 0.879 30 H 0.320 0.680 31 H 0.088 0.912 32 H 0.159 0.841 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.001 0.999 37 H 0.007 0.993 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.089 -12.303 -18.994 24.032 hybrid contribution -0.462 0.867 0.321 1.033 sum 7.627 -11.436 -18.673 23.187 Atomic orbital electron populations 1.21690 0.92738 1.03825 1.01586 1.20471 0.97258 0.84540 1.06110 1.24043 0.97560 0.96164 0.83059 1.84412 1.63507 1.24669 1.35503 1.29332 0.95405 0.87111 0.91027 1.70488 1.19738 1.20432 1.11382 1.21324 1.12647 0.92807 0.94984 1.17124 0.76597 0.84566 0.83596 1.90707 1.50766 1.19535 1.83559 1.48037 1.69189 1.08911 1.06233 1.22802 0.98458 0.77563 1.04523 1.21829 0.98014 1.00097 0.94686 1.21070 0.99295 0.93487 0.95463 1.19016 0.93438 0.94302 0.93619 1.21657 1.12073 0.92764 1.30080 0.91676 1.25977 0.94992 1.04044 0.95013 1.70118 1.18638 1.35160 1.33921 0.85494 0.79099 0.79268 0.77491 1.19904 1.21157 1.18443 1.21895 0.98381 0.95238 1.00331 1.21672 0.99868 0.99521 0.79369 0.89225 0.94571 0.91592 0.86860 0.87879 0.67973 0.91247 0.84103 0.94465 0.90977 0.91996 0.99887 0.99337 0.93013 0.93660 0.90509 0.89286 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.90 71.98 0.71 -1.69 16 2 C -0.05 -0.83 6.00 29.85 0.18 -0.65 16 3 C 0.05 1.07 6.69 25.18 0.17 1.24 16 4 O -0.19 -3.33 10.73 0.40 0.00 -3.33 16 5 C 0.20 2.87 13.19 130.52 1.72 4.59 16 6 N -0.49 -11.52 7.81 -305.15 -2.38 -13.91 16 7 C -0.10 -2.71 6.68 40.41 0.27 -2.44 16 8 C 0.59 19.15 7.67 86.66 0.66 19.82 16 9 O -0.56 -19.64 14.21 -4.07 -0.06 -19.70 16 10 N -0.59 -19.22 2.97 -821.94 -2.44 -21.66 16 11 C 0.09 2.80 6.14 86.51 0.53 3.33 16 12 C -0.11 -4.13 5.21 30.82 0.16 -3.97 16 13 C -0.07 -3.09 2.10 -10.76 -0.02 -3.12 16 14 C 0.03 1.78 4.45 29.85 0.13 1.91 16 15 C -0.53 -29.73 8.39 25.60 0.21 -29.51 16 16 H 0.07 3.47 7.06 -2.91 -0.02 3.45 16 17 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 18 N -0.94 -57.87 13.29 21.45 0.28 -57.59 16 19 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 23 C -0.12 -4.35 5.36 30.67 0.16 -4.18 16 24 C 0.12 3.67 6.44 86.36 0.56 4.23 16 25 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.10 2.20 6.38 -2.39 -0.02 2.19 16 30 H 0.31 0.62 8.06 -2.91 -0.02 0.59 16 31 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.14 4.22 4.09 -21.24 -0.09 4.14 16 33 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 2.88 6.91 -2.39 -0.02 2.87 16 35 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 36 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 37 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 38 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 39 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 41 H 0.09 2.75 7.00 -2.39 -0.02 2.73 16 42 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -73.17 339.02 4.29 -68.88 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 0.94 Total: 11.15 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 5.92 Total: -10.17 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -4.54 Total: -93.15 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.05 Total: -23.03 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -73.17 4.29 -68.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519544570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.457 kcal (2) G-P(sol) polarization free energy of solvation -73.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds