Wall clock time and date at job start Tue Mar 31 2020 07:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46794 * 2 1 4 4 C 1.53007 * 109.47004 * 184.79800 * 3 2 1 5 5 H 1.09001 * 109.47139 * 305.75938 * 4 3 2 6 6 O 1.42900 * 109.46871 * 65.76291 * 4 3 2 7 7 C 1.42899 * 113.99598 * 214.22819 * 6 4 3 8 8 C 1.53007 * 109.47173 * 184.96751 * 7 6 4 9 9 C 1.50698 * 109.47018 * 185.75902 * 4 3 2 10 10 O 1.21285 * 120.00038 * 245.00454 * 9 4 3 11 11 N 1.34774 * 120.00303 * 65.00049 * 9 4 3 12 12 C 1.39462 * 120.00271 * 175.52401 * 11 9 4 13 13 C 1.38603 * 119.58204 * 185.33510 * 12 11 9 14 14 C 1.40812 * 118.79685 * 179.77927 * 13 12 11 15 15 C 1.41543 * 120.99562 * 180.23403 * 14 13 12 16 16 H 1.07992 * 120.00283 * 211.36012 * 15 14 13 17 17 C 1.40035 * 119.99595 * 31.36704 * 15 14 13 18 18 N 1.30736 * 120.00470 * 7.15080 * 17 15 14 19 19 Si 1.86805 * 119.99387 * 187.14946 * 17 15 14 20 20 H 1.48490 * 109.47251 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46620 * 120.00242 * 19 17 15 22 22 H 1.48499 * 109.47030 * 239.99678 * 19 17 15 23 23 C 1.41176 * 118.00455 * 0.47989 * 14 13 12 24 24 C 1.37585 * 119.01928 * 359.75610 * 23 14 13 25 25 N 1.32086 * 121.10514 * 0.02562 * 24 23 14 26 26 H 1.08994 * 109.47621 * 60.00168 * 1 2 3 27 27 H 1.09001 * 109.47026 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46923 * 299.99786 * 1 2 3 29 29 H 1.09006 * 109.47626 * 240.00321 * 2 1 3 30 30 H 1.08994 * 109.47621 * 119.99831 * 2 1 3 31 31 H 1.08998 * 109.47329 * 64.80237 * 3 2 1 32 32 H 1.08996 * 109.47335 * 304.79847 * 3 2 1 33 33 H 1.09007 * 109.47156 * 304.96276 * 7 6 4 34 34 H 1.08994 * 109.47748 * 64.96577 * 7 6 4 35 35 H 1.08999 * 109.47081 * 179.97438 * 8 7 6 36 36 H 1.09002 * 109.46762 * 299.99317 * 8 7 6 37 37 H 1.08994 * 109.46926 * 59.99322 * 8 7 6 38 38 H 0.97002 * 119.99944 * 355.24486 * 11 9 4 39 39 H 1.08004 * 120.59766 * 359.97438 * 13 12 11 40 40 H 0.96999 * 120.00519 * 180.02562 * 18 17 15 41 41 H 1.08002 * 120.49131 * 179.77679 * 23 14 13 42 42 H 1.07996 * 119.44984 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5652 1.4443 -0.1207 5 1 3.9925 0.8211 0.6650 6 8 3.9425 0.9262 -1.3979 7 6 5.1595 0.1774 -1.3848 8 6 5.5289 -0.2205 -2.8153 9 6 4.0787 2.8540 0.0212 10 8 4.6265 3.3969 -0.9148 11 7 3.9291 3.5115 1.1881 12 6 4.4857 4.7799 1.3503 13 6 4.4230 5.4016 2.5874 14 6 4.9945 6.6802 2.7338 15 6 4.9613 7.3554 3.9773 16 1 4.9133 8.4339 4.0050 17 6 4.9909 6.6249 5.1716 18 7 5.1897 5.3331 5.1431 19 14 4.7465 7.4965 6.8057 20 1 4.5411 8.9476 6.5669 21 1 3.5557 6.9350 7.4928 22 1 5.9476 7.2994 7.6564 23 6 5.5969 7.2705 1.6017 24 6 5.6062 6.5777 0.4130 25 7 5.0626 5.3776 0.3184 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.7485 1.9310 0.9298 32 1 1.6081 1.9806 -0.8438 33 1 5.9569 0.7874 -0.9600 34 1 5.0276 -0.7201 -0.7806 35 1 6.4575 -0.7913 -2.8053 36 1 4.7316 -0.8305 -3.2400 37 1 5.6609 0.6770 -3.4194 38 1 3.4307 3.1042 1.9139 39 1 3.9472 4.9129 3.4248 40 1 5.2099 4.8270 5.9704 41 1 6.0442 8.2513 1.6678 42 1 6.0655 7.0226 -0.4573 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528838819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:54 Heat of formation + Delta-G solvation = -63.200470 kcal Electronic energy + Delta-G solvation = -23263.333619 eV Core-core repulsion = 19822.011170 eV Total energy + Delta-G solvation = -3441.322450 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.93801 -38.41891 -37.05815 -35.02942 -34.25630 -33.65964 -31.49395 -30.56027 -29.57431 -28.13464 -25.99092 -24.64625 -22.87411 -22.00477 -21.51481 -21.19381 -19.65924 -17.75792 -17.29305 -16.87157 -15.79392 -15.30936 -15.20626 -14.92068 -14.81410 -14.23095 -14.04746 -13.97637 -13.53126 -13.32463 -12.91843 -12.75688 -12.60628 -12.30880 -12.17957 -12.12894 -11.78675 -11.44760 -11.30645 -11.22691 -11.20278 -10.96250 -10.89962 -10.68116 -10.31957 -10.13489 -10.09497 -9.72778 -9.40079 -8.99189 -7.94613 -7.72451 -7.04828 -6.76563 -4.64024 2.51740 2.77210 3.01745 3.07133 3.15964 3.35580 3.43562 3.84662 3.86536 4.65402 4.72971 4.82009 4.92910 5.03195 5.04825 5.19513 5.26792 5.37603 5.47979 5.49548 5.64022 5.68385 5.72195 5.78164 5.92227 5.96453 6.00704 6.08900 6.14336 6.22682 6.55615 6.61414 6.77062 6.93231 7.10181 7.13152 7.35166 7.44491 7.77974 7.93210 8.19435 8.41456 8.68656 8.75114 8.87770 9.65021 10.12376 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017394 B = 0.003843 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.349529 B = 7283.877011 C = 8188.054679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.114 4.114 4 C 0.077 3.923 5 H 0.083 0.917 6 O -0.354 6.354 7 C 0.055 3.945 8 C -0.148 4.148 9 C 0.474 3.526 10 O -0.465 6.465 11 N -0.657 5.657 12 C 0.335 3.665 13 C -0.232 4.232 14 C 0.145 3.855 15 C -0.460 4.460 16 H 0.082 0.918 17 C 0.076 3.924 18 N -0.801 5.801 19 Si 0.914 3.086 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.274 1.274 23 C -0.278 4.278 24 C 0.116 3.884 25 N -0.550 5.550 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.406 0.594 39 H 0.128 0.872 40 H 0.280 0.720 41 H 0.103 0.897 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.235 -11.811 -4.057 13.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.152 4.152 4 C 0.015 3.985 5 H 0.101 0.899 6 O -0.272 6.272 7 C -0.021 4.021 8 C -0.205 4.205 9 C 0.258 3.742 10 O -0.333 6.333 11 N -0.306 5.306 12 C 0.110 3.890 13 C -0.258 4.258 14 C 0.137 3.863 15 C -0.492 4.492 16 H 0.100 0.900 17 C -0.141 4.141 18 N -0.427 5.427 19 Si 0.739 3.261 20 H -0.184 1.184 21 H -0.197 1.197 22 H -0.199 1.199 23 C -0.302 4.302 24 C -0.039 4.039 25 N -0.269 5.269 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.241 0.759 39 H 0.145 0.855 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.885 -12.113 -5.649 14.230 hybrid contribution -0.033 0.542 2.370 2.431 sum -4.918 -11.571 -3.279 12.993 Atomic orbital electron populations 1.21764 0.95676 1.01501 1.01998 1.21490 0.95939 0.96021 1.02416 1.21718 0.91610 0.98392 1.03471 1.22053 0.96561 0.92220 0.87701 0.89928 1.87970 1.40644 1.70210 1.28372 1.22553 0.86983 0.94172 0.98417 1.21701 1.01115 1.02109 0.95588 1.21311 0.81204 0.88494 0.83231 1.90786 1.38329 1.67073 1.37112 1.43510 1.54402 1.16605 1.16043 1.18234 0.94913 0.85053 0.90843 1.21589 1.09605 0.99745 0.94842 1.17593 0.85917 0.90585 0.92238 1.19579 1.45235 0.94771 0.89602 0.90032 1.25910 0.92019 0.94787 1.01433 1.69742 1.35699 1.07449 1.29859 0.86161 0.78649 0.80664 0.80657 1.18398 1.19748 1.19912 1.21993 1.10032 1.02608 0.95547 1.21790 0.96031 0.90078 0.95965 1.67228 1.17362 1.11723 1.30563 0.92625 0.92821 0.92655 0.91148 0.92074 0.90123 0.90282 0.93076 0.93538 0.91308 0.92090 0.91506 0.75897 0.85451 0.90936 0.87867 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.15 0.37 -0.93 16 2 C -0.12 -1.16 5.89 -26.73 -0.16 -1.31 16 3 C -0.11 -1.34 4.89 -26.73 -0.13 -1.47 16 4 C 0.08 1.09 2.52 -27.88 -0.07 1.02 16 5 H 0.08 0.99 7.77 -51.93 -0.40 0.58 16 6 O -0.35 -5.36 9.01 -55.09 -0.50 -5.85 16 7 C 0.06 0.70 6.44 37.16 0.24 0.94 16 8 C -0.15 -1.61 10.28 37.16 0.38 -1.22 16 9 C 0.47 9.18 7.14 -10.99 -0.08 9.10 16 10 O -0.46 -11.15 14.76 -14.31 -0.21 -11.36 16 11 N -0.66 -12.89 5.31 -11.49 -0.06 -12.95 16 12 C 0.33 8.13 7.41 -154.71 -1.15 6.99 16 13 C -0.23 -5.86 8.57 -38.47 -0.33 -6.19 16 14 C 0.15 3.81 5.55 -106.55 -0.59 3.22 16 15 C -0.46 -11.81 9.12 -37.65 -0.34 -12.15 16 16 H 0.08 2.01 7.86 -52.49 -0.41 1.60 16 17 C 0.08 1.83 5.33 -17.34 -0.09 1.74 16 18 N -0.80 -19.75 10.91 55.55 0.61 -19.14 16 19 Si 0.91 17.97 29.57 -169.99 -5.03 12.95 16 20 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 21 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 22 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 23 C -0.28 -6.84 9.90 -38.71 -0.38 -7.23 16 24 C 0.12 2.81 11.15 -17.68 -0.20 2.61 16 25 N -0.55 -14.19 7.85 -12.53 -0.10 -14.29 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.71 7.73 -51.93 -0.40 0.31 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.86 7.63 -51.93 -0.40 0.46 16 32 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.41 6.44 8.24 -40.82 -0.34 6.11 16 39 H 0.13 3.18 6.41 -52.48 -0.34 2.84 16 40 H 0.28 6.24 8.29 -40.82 -0.34 5.91 16 41 H 0.10 2.33 8.06 -52.49 -0.42 1.90 16 42 H 0.12 2.62 8.06 -52.49 -0.42 2.20 16 LS Contribution 354.28 15.07 5.34 5.34 Total: -1.00 -31.88 354.28 -8.97 -40.86 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -6.49 Total: 9.36 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -2.53 Total: -4.90 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.45 Total: -46.39 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.71 Total: -17.22 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.88 -8.97 -40.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528838819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.344 kcal (2) G-P(sol) polarization free energy of solvation -31.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds