Wall clock time and date at job start Tue Mar 31 2020 07:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46794 * 2 1 4 4 C 1.53007 * 109.47004 * 184.79800 * 3 2 1 5 5 H 1.09001 * 109.47139 * 305.75938 * 4 3 2 6 6 O 1.42900 * 109.46871 * 65.76291 * 4 3 2 7 7 C 1.42899 * 113.99598 * 214.22819 * 6 4 3 8 8 C 1.53007 * 109.47173 * 184.96751 * 7 6 4 9 9 C 1.50698 * 109.47018 * 185.75902 * 4 3 2 10 10 O 1.21285 * 120.00038 * 245.00454 * 9 4 3 11 11 N 1.34774 * 120.00303 * 65.00049 * 9 4 3 12 12 C 1.39462 * 120.00271 * 175.52401 * 11 9 4 13 13 C 1.38603 * 119.58204 * 185.33510 * 12 11 9 14 14 C 1.40812 * 118.79685 * 179.77927 * 13 12 11 15 15 C 1.41543 * 120.99562 * 180.23403 * 14 13 12 16 16 H 1.07992 * 120.00283 * 211.36012 * 15 14 13 17 17 C 1.40035 * 119.99595 * 31.36704 * 15 14 13 18 18 N 1.30736 * 120.00470 * 7.15080 * 17 15 14 19 19 Si 1.86805 * 119.99387 * 187.14946 * 17 15 14 20 20 H 1.48490 * 109.47251 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46620 * 120.00242 * 19 17 15 22 22 H 1.48499 * 109.47030 * 239.99678 * 19 17 15 23 23 C 1.41176 * 118.00455 * 0.47989 * 14 13 12 24 24 C 1.37585 * 119.01928 * 359.75610 * 23 14 13 25 25 N 1.32086 * 121.10514 * 0.02562 * 24 23 14 26 26 H 1.08994 * 109.47621 * 60.00168 * 1 2 3 27 27 H 1.09001 * 109.47026 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46923 * 299.99786 * 1 2 3 29 29 H 1.09006 * 109.47626 * 240.00321 * 2 1 3 30 30 H 1.08994 * 109.47621 * 119.99831 * 2 1 3 31 31 H 1.08998 * 109.47329 * 64.80237 * 3 2 1 32 32 H 1.08996 * 109.47335 * 304.79847 * 3 2 1 33 33 H 1.09007 * 109.47156 * 304.96276 * 7 6 4 34 34 H 1.08994 * 109.47748 * 64.96577 * 7 6 4 35 35 H 1.08999 * 109.47081 * 179.97438 * 8 7 6 36 36 H 1.09002 * 109.46762 * 299.99317 * 8 7 6 37 37 H 1.08994 * 109.46926 * 59.99322 * 8 7 6 38 38 H 0.97002 * 119.99944 * 355.24486 * 11 9 4 39 39 H 1.08004 * 120.59766 * 359.97438 * 13 12 11 40 40 H 0.96999 * 120.00519 * 180.02562 * 18 17 15 41 41 H 1.08002 * 120.49131 * 179.77679 * 23 14 13 42 42 H 1.07996 * 119.44984 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5652 1.4443 -0.1207 5 1 3.9925 0.8211 0.6650 6 8 3.9425 0.9262 -1.3979 7 6 5.1595 0.1774 -1.3848 8 6 5.5289 -0.2205 -2.8153 9 6 4.0787 2.8540 0.0212 10 8 4.6265 3.3969 -0.9148 11 7 3.9291 3.5115 1.1881 12 6 4.4857 4.7799 1.3503 13 6 4.4230 5.4016 2.5874 14 6 4.9945 6.6802 2.7338 15 6 4.9613 7.3554 3.9773 16 1 4.9133 8.4339 4.0050 17 6 4.9909 6.6249 5.1716 18 7 5.1897 5.3331 5.1431 19 14 4.7465 7.4965 6.8057 20 1 4.5411 8.9476 6.5669 21 1 3.5557 6.9350 7.4928 22 1 5.9476 7.2994 7.6564 23 6 5.5969 7.2705 1.6017 24 6 5.6062 6.5777 0.4130 25 7 5.0626 5.3776 0.3184 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.7485 1.9310 0.9298 32 1 1.6081 1.9806 -0.8438 33 1 5.9569 0.7874 -0.9600 34 1 5.0276 -0.7201 -0.7806 35 1 6.4575 -0.7913 -2.8053 36 1 4.7316 -0.8305 -3.2400 37 1 5.6609 0.6770 -3.4194 38 1 3.4307 3.1042 1.9139 39 1 3.9472 4.9129 3.4248 40 1 5.2099 4.8270 5.9704 41 1 6.0442 8.2513 1.6678 42 1 6.0655 7.0226 -0.4573 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528838819.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:21:53 Heat of formation + Delta-G solvation = -81.238624 kcal Electronic energy + Delta-G solvation = -23264.115812 eV Core-core repulsion = 19822.011170 eV Total energy + Delta-G solvation = -3442.104643 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.48757 -40.02845 -38.51142 -36.16100 -35.92446 -35.33310 -32.55553 -32.36638 -30.97832 -29.52785 -27.90695 -25.78723 -23.89039 -23.83797 -23.13100 -22.08807 -21.28623 -19.51352 -18.80928 -18.09467 -17.40060 -16.95802 -16.52700 -16.20926 -16.08699 -15.75557 -15.65025 -15.43237 -14.98651 -14.61729 -14.35705 -14.26307 -14.02297 -13.57524 -13.19809 -13.07830 -13.01280 -12.87947 -12.76702 -12.70445 -12.28780 -12.15302 -11.99561 -11.90267 -11.85809 -11.52964 -11.47749 -11.33503 -11.19180 -10.46667 -9.89708 -9.57301 -8.89531 -8.59846 -6.58997 0.69271 0.97773 1.42104 1.51655 1.56487 1.80251 1.97512 2.21679 2.68080 2.82487 3.49064 3.68568 3.82468 3.86152 4.13888 4.15556 4.20014 4.28871 4.36544 4.44966 4.66551 4.68742 4.70839 4.81169 4.85413 4.89286 4.92385 5.01552 5.03366 5.06069 5.22808 5.23198 5.26773 5.36540 5.44398 5.49557 5.60886 5.90050 6.01692 6.17703 6.47484 6.55891 6.77403 6.84121 7.26496 7.79308 8.32133 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017394 B = 0.003843 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.349529 B = 7283.877011 C = 8188.054679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.110 4.110 4 C 0.088 3.912 5 H 0.114 0.886 6 O -0.371 6.371 7 C 0.047 3.953 8 C -0.145 4.145 9 C 0.470 3.530 10 O -0.517 6.517 11 N -0.648 5.648 12 C 0.330 3.670 13 C -0.246 4.246 14 C 0.117 3.883 15 C -0.489 4.489 16 H 0.083 0.917 17 C 0.038 3.962 18 N -0.824 5.824 19 Si 0.990 3.010 20 H -0.259 1.259 21 H -0.261 1.261 22 H -0.268 1.268 23 C -0.291 4.291 24 C 0.109 3.891 25 N -0.577 5.577 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.028 0.972 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.043 0.957 38 H 0.423 0.577 39 H 0.126 0.874 40 H 0.291 0.709 41 H 0.117 0.883 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.952 -13.323 -2.597 14.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.152 4.152 3 C -0.148 4.148 4 C 0.026 3.974 5 H 0.131 0.869 6 O -0.289 6.289 7 C -0.029 4.029 8 C -0.202 4.202 9 C 0.256 3.744 10 O -0.389 6.389 11 N -0.298 5.298 12 C 0.104 3.896 13 C -0.272 4.272 14 C 0.108 3.892 15 C -0.520 4.520 16 H 0.101 0.899 17 C -0.178 4.178 18 N -0.450 5.450 19 Si 0.810 3.190 20 H -0.183 1.183 21 H -0.186 1.186 22 H -0.192 1.192 23 C -0.315 4.315 24 C -0.044 4.044 25 N -0.296 5.296 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.261 0.739 39 H 0.143 0.857 40 H 0.101 0.899 41 H 0.135 0.865 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.621 -13.663 -4.188 15.356 hybrid contribution 0.228 0.978 1.881 2.132 sum -5.393 -12.684 -2.307 13.975 Atomic orbital electron populations 1.21762 0.94906 1.02357 1.01886 1.21450 0.96527 0.94131 1.03062 1.21758 0.89543 1.00188 1.03335 1.22134 0.98004 0.88779 0.88488 0.86872 1.87973 1.41478 1.70410 1.29050 1.22783 0.85503 0.94623 0.99969 1.21721 1.02734 1.01548 0.94203 1.22419 0.79749 0.90201 0.82000 1.90753 1.40668 1.68733 1.38709 1.43537 1.53973 1.15164 1.17080 1.18502 0.94313 0.86449 0.90339 1.21568 1.10496 0.99983 0.95142 1.18023 0.86496 0.91473 0.93190 1.19855 1.46603 0.95116 0.90441 0.89937 1.26772 0.90932 0.95438 1.04621 1.69778 1.34970 1.08723 1.31550 0.85035 0.78934 0.79307 0.75690 1.18296 1.18567 1.19250 1.22177 1.10466 1.03365 0.95472 1.22225 0.95573 0.89845 0.96796 1.67351 1.18434 1.12527 1.31330 0.93308 0.91484 0.92272 0.91580 0.90304 0.88920 0.92062 0.95364 0.90319 0.88988 0.90855 0.93752 0.73902 0.85662 0.89854 0.86472 0.83388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 71.98 0.71 -1.53 16 2 C -0.11 -1.88 5.89 30.59 0.18 -1.70 16 3 C -0.11 -2.42 4.89 30.60 0.15 -2.27 16 4 C 0.09 2.38 2.52 29.85 0.08 2.46 16 5 H 0.11 2.40 7.77 -2.39 -0.02 2.39 16 6 O -0.37 -10.91 9.01 -129.99 -1.17 -12.08 16 7 C 0.05 1.14 6.44 71.98 0.46 1.61 16 8 C -0.15 -2.98 10.28 71.98 0.74 -2.24 16 9 C 0.47 18.29 7.14 87.66 0.63 18.92 16 10 O -0.52 -25.48 14.76 15.94 0.24 -25.25 16 11 N -0.65 -25.49 5.31 -308.66 -1.64 -27.13 16 12 C 0.33 16.36 7.41 132.76 0.98 17.35 16 13 C -0.25 -12.69 8.57 22.99 0.20 -12.49 16 14 C 0.12 6.24 5.55 -21.11 -0.12 6.12 16 15 C -0.49 -25.34 9.12 23.52 0.21 -25.13 16 16 H 0.08 4.11 7.86 -2.91 -0.02 4.09 16 17 C 0.04 1.81 5.33 85.29 0.45 2.26 16 18 N -0.82 -40.29 10.91 21.84 0.24 -40.05 16 19 Si 0.99 35.93 29.57 68.60 2.03 37.96 16 20 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 21 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 22 H -0.27 -9.41 7.11 99.48 0.71 -8.71 16 23 C -0.29 -14.62 9.90 22.84 0.23 -14.39 16 24 C 0.11 5.40 11.15 84.50 0.94 6.34 16 25 N -0.58 -30.46 7.85 -193.54 -1.52 -31.98 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 1.17 7.73 -2.38 -0.02 1.15 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.79 7.63 -2.39 -0.02 1.77 16 32 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.42 13.16 8.24 -92.71 -0.76 12.40 16 39 H 0.13 6.36 6.41 -2.91 -0.02 6.34 16 40 H 0.29 12.67 8.29 -92.71 -0.77 11.90 16 41 H 0.12 5.36 8.06 -2.91 -0.02 5.34 16 42 H 0.15 6.33 8.06 -2.91 -0.02 6.31 16 Total: -1.00 -70.48 354.28 4.27 -66.21 By element: Atomic # 1 Polarization: 36.77 SS G_CDS: 0.25 Total: 37.02 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 5.85 Total: -4.70 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -2.92 Total: -99.16 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -0.94 Total: -37.33 kcal Atomic # 14 Polarization: 35.93 SS G_CDS: 2.03 Total: 37.96 kcal Total: -70.48 4.27 -66.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528838819.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.026 kcal (2) G-P(sol) polarization free energy of solvation -70.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds