Wall clock time and date at job start Tue Mar 31 2020 06:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46793 * 2 1 4 4 C 1.50696 * 109.47239 * 119.99717 * 2 1 3 5 5 N 1.30015 * 127.33834 * 300.00395 * 4 2 1 6 6 O 1.20654 * 112.30391 * 179.97438 * 5 4 2 7 7 C 1.33495 * 113.15707 * 359.75708 * 6 5 4 8 8 C 1.37360 * 106.33940 * 0.38784 * 7 6 5 9 9 C 1.47399 * 128.56534 * 179.91562 * 8 7 6 10 10 O 1.21613 * 120.00169 * 141.63732 * 9 8 7 11 11 N 1.34780 * 120.00069 * 321.64193 * 9 8 7 12 12 C 1.46924 * 120.62865 * 354.36948 * 11 9 8 13 13 C 1.53191 * 108.89378 * 233.51720 * 12 11 9 14 14 C 1.53075 * 109.29286 * 305.57516 * 13 12 11 15 15 C 1.50706 * 109.44880 * 181.24258 * 14 13 12 16 16 H 1.08003 * 119.99587 * 239.79252 * 15 14 13 17 17 C 1.37871 * 119.99757 * 59.79374 * 15 14 13 18 18 N 1.31510 * 120.00481 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99625 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47114 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46954 * 120.00203 * 19 17 15 22 22 H 1.48505 * 109.46996 * 239.99891 * 19 17 15 23 23 C 1.53034 * 109.65486 * 61.15775 * 14 13 12 24 24 C 1.46920 * 120.63159 * 174.34907 * 11 9 8 25 25 H 1.08996 * 109.46801 * 299.99901 * 1 2 3 26 26 H 1.08993 * 109.46953 * 60.00106 * 1 2 3 27 27 H 1.09001 * 109.46570 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47531 * 240.00226 * 2 1 3 29 29 H 1.09002 * 109.47026 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47127 * 299.99894 * 3 2 1 31 31 H 1.08996 * 109.47366 * 60.00445 * 3 2 1 32 32 H 1.08004 * 126.83367 * 180.31059 * 7 6 5 33 33 H 1.09005 * 109.58607 * 353.37528 * 12 11 9 34 34 H 1.08999 * 109.58881 * 113.65569 * 12 11 9 35 35 H 1.08990 * 109.49755 * 65.39073 * 13 12 11 36 36 H 1.09001 * 109.49660 * 185.48515 * 13 12 11 37 37 H 1.08997 * 109.35082 * 301.13219 * 14 13 12 38 38 H 0.97004 * 120.00236 * 179.97438 * 18 17 15 39 39 H 1.09005 * 109.50085 * 178.74460 * 23 14 13 40 40 H 1.09004 * 109.52999 * 58.66491 * 23 14 13 41 41 H 1.09007 * 109.58864 * 246.19781 * 24 11 9 42 42 H 1.08997 * 109.58869 * 6.48268 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 7 1.8079 -0.3929 2.4711 6 8 2.3435 -1.1511 3.2419 7 6 3.0248 -2.1242 2.6329 8 6 2.8807 -1.9109 1.2836 9 6 3.4341 -2.6953 0.1651 10 8 2.7690 -2.8794 -0.8362 11 7 4.6773 -3.2085 0.2520 12 6 5.5387 -2.8935 1.3998 13 6 6.8758 -2.3532 0.8831 14 6 7.4795 -3.3565 -0.1029 15 6 8.8098 -2.8425 -0.5903 16 1 8.9665 -2.6641 -1.6439 17 6 9.8265 -2.6002 0.3088 18 7 9.6354 -2.8170 1.5918 19 14 11.4756 -1.9638 -0.2955 20 1 11.4337 -1.8035 -1.7712 21 1 11.7613 -0.6508 0.3368 22 1 12.5426 -2.9308 0.0678 23 6 6.5361 -3.5391 -1.2939 24 6 5.1968 -4.0941 -0.7990 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.5801 -2.9202 3.1068 33 1 5.0563 -2.1401 2.0227 34 1 5.7112 -3.7961 1.9859 35 1 6.7126 -1.4018 0.3770 36 1 7.5576 -2.2078 1.7210 37 1 7.6218 -4.3141 0.3979 38 1 10.3509 -2.6468 2.2243 39 1 6.9786 -4.2368 -2.0050 40 1 6.3737 -2.5775 -1.7809 41 1 5.3436 -5.0953 -0.3937 42 1 4.4878 -4.1350 -1.6258 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000529003604.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:35 Heat of formation + Delta-G solvation = 9.056397 kcal Electronic energy + Delta-G solvation = -24114.994490 eV Core-core repulsion = 20676.805334 eV Total energy + Delta-G solvation = -3438.189157 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.89679 -39.68752 -36.98155 -36.21729 -33.76252 -32.75428 -31.71653 -30.96934 -30.09691 -27.25907 -26.58494 -24.68301 -23.76423 -22.70522 -22.35385 -20.25150 -20.04915 -18.85790 -17.69819 -17.32768 -16.73422 -16.14339 -15.79114 -15.07178 -14.64955 -14.58292 -14.44079 -13.66165 -13.40363 -13.39641 -13.19987 -12.79909 -12.75319 -12.41017 -12.32483 -11.90533 -11.67232 -11.41753 -11.39375 -11.35312 -11.00929 -10.84652 -10.68446 -10.47132 -10.20124 -9.95906 -9.84368 -9.76959 -9.48977 -9.24898 -8.98950 -8.44742 -8.13765 -6.09322 -4.15193 1.19174 1.84372 2.85472 3.12585 3.23722 3.32654 3.36504 3.44465 4.00630 4.26576 4.36522 4.76447 4.97221 5.02652 5.02856 5.10985 5.20469 5.41698 5.47336 5.52275 5.65509 5.71189 5.71880 5.82033 5.85437 5.93007 5.95980 6.05341 6.12426 6.18311 6.25082 6.34656 6.55641 6.79377 6.94567 7.04405 7.18642 7.58725 7.74609 7.83840 7.96327 8.20228 8.33521 8.36173 8.88369 9.50519 10.96362 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020610 B = 0.004121 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.254387 B = 6792.435548 C = 6950.856478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.020 4.020 3 C -0.144 4.144 4 C 0.072 3.928 5 N -0.357 5.357 6 O 0.094 5.906 7 C -0.012 4.012 8 C -0.239 4.239 9 C 0.589 3.411 10 O -0.544 6.544 11 N -0.590 5.590 12 C 0.093 3.907 13 C -0.123 4.123 14 C 0.048 3.952 15 C -0.512 4.512 16 H 0.056 0.944 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.123 4.123 24 C 0.113 3.887 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.227 0.773 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.039 0.961 36 H 0.106 0.894 37 H 0.028 0.972 38 H 0.260 0.740 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.540 2.177 1.902 13.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.039 4.039 3 C -0.202 4.202 4 C -0.091 4.091 5 N -0.063 5.063 6 O 0.034 5.966 7 C -0.094 4.094 8 C -0.246 4.246 9 C 0.376 3.624 10 O -0.424 6.424 11 N -0.322 5.322 12 C -0.028 4.028 13 C -0.161 4.161 14 C 0.029 3.971 15 C -0.550 4.550 16 H 0.074 0.926 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.162 4.162 24 C -0.008 4.008 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.120 0.880 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.243 0.757 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.124 0.876 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.443 3.038 2.170 14.918 hybrid contribution 1.569 -0.271 -0.601 1.702 sum -12.874 2.767 1.569 13.261 Atomic orbital electron populations 1.21785 0.93368 1.02352 1.02252 1.19677 0.96354 0.95542 0.92374 1.21842 1.01603 0.94355 1.02402 1.24742 0.96584 0.93975 0.93800 1.73562 1.16842 1.14085 1.01788 1.84558 1.48783 1.29371 1.33863 1.26493 0.96393 0.94565 0.91956 1.22361 1.06723 1.01003 0.94503 1.16915 0.81513 0.78751 0.85175 1.90747 1.59940 1.60502 1.31191 1.48107 1.12733 1.47321 1.24048 1.22298 0.93259 1.00050 0.87237 1.22024 0.92484 0.98715 1.02905 1.18653 0.92397 0.95308 0.90699 1.21236 0.96485 1.43656 0.93616 0.92604 1.24946 0.98634 0.95399 0.94916 1.69827 1.32783 1.49233 1.01270 0.86565 0.84034 0.78552 0.79039 1.19810 1.21047 1.21001 1.22011 0.93679 1.00216 1.00251 1.21766 0.96858 0.92078 0.90137 0.92287 0.91637 0.92311 0.87996 0.92254 0.91563 0.92148 0.75652 0.91326 0.91540 0.94227 0.87560 0.95372 0.92990 0.91915 0.92850 0.91819 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.18 37.16 0.34 -1.20 16 2 C -0.02 -0.26 3.38 -91.77 -0.31 -0.57 16 3 C -0.14 -1.66 9.18 37.16 0.34 -1.32 16 4 C 0.07 1.05 6.10 -79.77 -0.49 0.56 16 5 N -0.36 -5.10 12.01 34.78 0.42 -4.68 16 6 O 0.09 1.22 11.06 18.65 0.21 1.42 16 7 C -0.01 -0.15 10.00 30.41 0.30 0.16 16 8 C -0.24 -3.57 5.58 -102.89 -0.57 -4.14 16 9 C 0.59 10.17 7.59 -12.53 -0.10 10.07 16 10 O -0.54 -10.66 15.71 5.27 0.08 -10.57 16 11 N -0.59 -10.07 2.97 -174.04 -0.52 -10.58 16 12 C 0.09 1.55 5.57 -3.71 -0.02 1.53 16 13 C -0.12 -2.60 5.16 -26.59 -0.14 -2.74 16 14 C 0.05 1.09 2.06 -91.71 -0.19 0.90 16 15 C -0.51 -13.27 8.56 -34.44 -0.29 -13.56 16 16 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 18 N -0.89 -23.76 11.30 55.43 0.63 -23.13 16 19 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.12 -2.42 5.30 -26.61 -0.14 -2.56 16 24 C 0.11 1.95 6.44 -3.71 -0.02 1.93 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.10 1.47 7.24 -51.93 -0.38 1.10 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.23 1.89 7.33 -52.48 -0.38 1.50 16 33 H 0.07 1.00 4.73 -51.93 -0.25 0.76 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.11 2.51 6.03 -51.93 -0.31 2.19 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 42 H 0.08 1.39 6.99 -51.93 -0.36 1.02 16 LS Contribution 339.39 15.07 5.11 5.11 Total: -1.00 -29.03 339.39 -6.77 -35.80 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.30 Total: 0.61 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -1.38 Total: -9.42 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.53 Total: -38.40 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.29 Total: -9.15 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.03 -6.77 -35.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529003604.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.859 kcal (2) G-P(sol) polarization free energy of solvation -29.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds