Wall clock time and date at job start Tue Mar 31 2020 06:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46793 * 2 1 4 4 C 1.50696 * 109.47239 * 119.99717 * 2 1 3 5 5 N 1.30015 * 127.33834 * 300.00395 * 4 2 1 6 6 O 1.20654 * 112.30391 * 179.97438 * 5 4 2 7 7 C 1.33495 * 113.15707 * 359.75708 * 6 5 4 8 8 C 1.37360 * 106.33940 * 0.38784 * 7 6 5 9 9 C 1.47399 * 128.56534 * 179.91562 * 8 7 6 10 10 O 1.21613 * 120.00169 * 141.63732 * 9 8 7 11 11 N 1.34780 * 120.00069 * 321.64193 * 9 8 7 12 12 C 1.46924 * 120.62865 * 354.36948 * 11 9 8 13 13 C 1.53191 * 108.89378 * 233.51720 * 12 11 9 14 14 C 1.53075 * 109.29286 * 305.57516 * 13 12 11 15 15 C 1.50706 * 109.44880 * 181.24258 * 14 13 12 16 16 H 1.08003 * 119.99587 * 239.79252 * 15 14 13 17 17 C 1.37871 * 119.99757 * 59.79374 * 15 14 13 18 18 N 1.31510 * 120.00481 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99625 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47114 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.46954 * 120.00203 * 19 17 15 22 22 H 1.48505 * 109.46996 * 239.99891 * 19 17 15 23 23 C 1.53034 * 109.65486 * 61.15775 * 14 13 12 24 24 C 1.46920 * 120.63159 * 174.34907 * 11 9 8 25 25 H 1.08996 * 109.46801 * 299.99901 * 1 2 3 26 26 H 1.08993 * 109.46953 * 60.00106 * 1 2 3 27 27 H 1.09001 * 109.46570 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47531 * 240.00226 * 2 1 3 29 29 H 1.09002 * 109.47026 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47127 * 299.99894 * 3 2 1 31 31 H 1.08996 * 109.47366 * 60.00445 * 3 2 1 32 32 H 1.08004 * 126.83367 * 180.31059 * 7 6 5 33 33 H 1.09005 * 109.58607 * 353.37528 * 12 11 9 34 34 H 1.08999 * 109.58881 * 113.65569 * 12 11 9 35 35 H 1.08990 * 109.49755 * 65.39073 * 13 12 11 36 36 H 1.09001 * 109.49660 * 185.48515 * 13 12 11 37 37 H 1.08997 * 109.35082 * 301.13219 * 14 13 12 38 38 H 0.97004 * 120.00236 * 179.97438 * 18 17 15 39 39 H 1.09005 * 109.50085 * 178.74460 * 23 14 13 40 40 H 1.09004 * 109.52999 * 58.66491 * 23 14 13 41 41 H 1.09007 * 109.58864 * 246.19781 * 24 11 9 42 42 H 1.08997 * 109.58869 * 6.48268 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 7 1.8079 -0.3929 2.4711 6 8 2.3435 -1.1511 3.2419 7 6 3.0248 -2.1242 2.6329 8 6 2.8807 -1.9109 1.2836 9 6 3.4341 -2.6953 0.1651 10 8 2.7690 -2.8794 -0.8362 11 7 4.6773 -3.2085 0.2520 12 6 5.5387 -2.8935 1.3998 13 6 6.8758 -2.3532 0.8831 14 6 7.4795 -3.3565 -0.1029 15 6 8.8098 -2.8425 -0.5903 16 1 8.9665 -2.6641 -1.6439 17 6 9.8265 -2.6002 0.3088 18 7 9.6354 -2.8170 1.5918 19 14 11.4756 -1.9638 -0.2955 20 1 11.4337 -1.8035 -1.7712 21 1 11.7613 -0.6508 0.3368 22 1 12.5426 -2.9308 0.0678 23 6 6.5361 -3.5391 -1.2939 24 6 5.1968 -4.0941 -0.7990 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.5801 -2.9202 3.1068 33 1 5.0563 -2.1401 2.0227 34 1 5.7112 -3.7961 1.9859 35 1 6.7126 -1.4018 0.3770 36 1 7.5576 -2.2078 1.7210 37 1 7.6218 -4.3141 0.3979 38 1 10.3509 -2.6468 2.2243 39 1 6.9786 -4.2368 -2.0050 40 1 6.3737 -2.5775 -1.7809 41 1 5.3436 -5.0953 -0.3937 42 1 4.4878 -4.1350 -1.6258 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000529003604.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:34 Heat of formation + Delta-G solvation = -6.508182 kcal Electronic energy + Delta-G solvation = -24115.669421 eV Core-core repulsion = 20676.805334 eV Total energy + Delta-G solvation = -3438.864088 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.96971 -41.08179 -38.46818 -37.27312 -35.43666 -34.07937 -32.86680 -32.50750 -31.59574 -28.25750 -28.14955 -26.11436 -24.86005 -24.17306 -23.84616 -21.71394 -21.06545 -20.29725 -18.84886 -18.58701 -18.34146 -17.67068 -17.09570 -16.51447 -16.26076 -15.77791 -15.56744 -14.93836 -14.90216 -14.67983 -14.37088 -14.31105 -14.27018 -13.90230 -13.35829 -13.17771 -13.11474 -12.84581 -12.78687 -12.44963 -12.35258 -12.33931 -12.15939 -11.98583 -11.85625 -11.49761 -11.21809 -11.01802 -10.97838 -10.92494 -10.55894 -10.38026 -9.61209 -8.08247 -6.20207 0.13814 0.74173 1.39826 1.44080 1.53076 1.62599 1.96807 2.26349 2.44334 2.93912 3.18986 3.23388 3.58990 3.90795 4.02701 4.08521 4.10259 4.11941 4.27106 4.36087 4.44018 4.52262 4.57671 4.68437 4.69213 4.69987 4.82939 4.85778 4.88817 4.96013 5.03924 5.18363 5.22361 5.23278 5.28811 5.41668 5.52369 5.64831 5.99553 6.12028 6.36298 6.40987 6.88873 7.00770 7.17959 7.47535 8.95297 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020610 B = 0.004121 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.254387 B = 6792.435548 C = 6950.856478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.025 4.025 3 C -0.139 4.139 4 C 0.062 3.938 5 N -0.367 5.367 6 O 0.100 5.900 7 C 0.020 3.980 8 C -0.274 4.274 9 C 0.593 3.407 10 O -0.573 6.573 11 N -0.592 5.592 12 C 0.105 3.895 13 C -0.115 4.115 14 C 0.045 3.955 15 C -0.535 4.535 16 H 0.045 0.955 17 C 0.021 3.979 18 N -0.909 5.909 19 Si 0.944 3.056 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.280 1.280 23 C -0.114 4.114 24 C 0.119 3.881 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.049 0.951 28 H 0.083 0.917 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.266 0.734 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.019 0.981 36 H 0.083 0.917 37 H 0.011 0.989 38 H 0.262 0.738 39 H 0.067 0.933 40 H 0.037 0.963 41 H 0.082 0.918 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.213 2.175 2.772 14.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.044 4.044 3 C -0.196 4.196 4 C -0.100 4.100 5 N -0.073 5.073 6 O 0.041 5.959 7 C -0.062 4.062 8 C -0.282 4.282 9 C 0.382 3.618 10 O -0.454 6.454 11 N -0.323 5.323 12 C -0.017 4.017 13 C -0.154 4.154 14 C 0.027 3.973 15 C -0.573 4.573 16 H 0.063 0.937 17 C -0.178 4.178 18 N -0.549 5.549 19 Si 0.771 3.229 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.205 1.205 23 C -0.153 4.153 24 C -0.003 4.003 25 H 0.080 0.920 26 H 0.103 0.897 27 H 0.068 0.932 28 H 0.101 0.899 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.281 0.719 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.038 0.962 36 H 0.101 0.899 37 H 0.029 0.971 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.056 0.944 41 H 0.100 0.900 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.119 3.042 3.048 15.721 hybrid contribution 1.804 -0.276 -0.873 2.023 sum -13.315 2.765 2.175 13.772 Atomic orbital electron populations 1.21743 0.91876 1.02104 1.03357 1.19745 0.97615 0.95945 0.91124 1.21807 1.00632 0.93673 1.03516 1.25027 0.96505 0.94112 0.94375 1.73563 1.17475 1.14669 1.01630 1.84553 1.48493 1.29324 1.33557 1.27119 0.94343 0.93928 0.90826 1.22244 1.08779 1.02033 0.95108 1.17124 0.81165 0.78204 0.85321 1.90726 1.60642 1.61448 1.32573 1.48104 1.12855 1.47317 1.24050 1.22190 0.90844 1.01449 0.87168 1.21790 0.94600 0.97561 1.01414 1.18627 0.92111 0.94578 0.92012 1.21574 0.98385 1.44055 0.93271 0.93695 1.25557 1.01363 0.95704 0.95176 1.69918 1.33507 1.49632 1.01810 0.85722 0.80737 0.78040 0.78430 1.19863 1.20806 1.20547 1.21860 0.94584 0.99732 0.99085 1.21684 0.95224 0.92792 0.90594 0.91983 0.89696 0.93206 0.89915 0.93672 0.89587 0.91873 0.71863 0.88963 0.89505 0.96191 0.89871 0.97053 0.92903 0.91474 0.94408 0.89953 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.18 71.98 0.66 -2.12 16 2 C -0.02 -0.63 3.38 -11.54 -0.04 -0.67 16 3 C -0.14 -3.06 9.18 71.98 0.66 -2.40 16 4 C 0.06 1.75 6.10 45.15 0.28 2.03 16 5 N -0.37 -9.87 12.01 -44.78 -0.54 -10.41 16 6 O 0.10 2.32 11.06 76.97 0.85 3.17 16 7 C 0.02 0.41 10.00 67.61 0.68 1.08 16 8 C -0.27 -7.75 5.58 -18.74 -0.10 -7.85 16 9 C 0.59 19.79 7.59 86.65 0.66 20.45 16 10 O -0.57 -22.21 15.71 -4.07 -0.06 -22.28 16 11 N -0.59 -19.32 2.97 -822.80 -2.45 -21.77 16 12 C 0.11 3.28 5.57 86.36 0.48 3.76 16 13 C -0.11 -4.85 5.16 30.68 0.16 -4.69 16 14 C 0.05 2.07 2.06 -11.50 -0.02 2.05 16 15 C -0.53 -28.10 8.56 25.60 0.22 -27.88 16 16 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 17 C 0.02 1.11 5.30 84.65 0.45 1.56 16 18 N -0.91 -48.47 11.30 21.44 0.24 -48.23 16 19 Si 0.94 42.04 29.54 68.60 2.03 44.06 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 23 C -0.11 -4.49 5.30 30.67 0.16 -4.32 16 24 C 0.12 3.96 6.44 86.37 0.56 4.51 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 2.41 7.24 -2.39 -0.02 2.40 16 29 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.27 3.18 7.33 -2.91 -0.02 3.16 16 33 H 0.09 2.44 4.73 -2.38 -0.01 2.43 16 34 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 3.93 6.03 -2.39 -0.01 3.91 16 37 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 39 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 40 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 41 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 42 H 0.08 2.77 6.99 -2.39 -0.02 2.75 16 Total: -1.00 -62.89 339.39 5.87 -57.02 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 1.01 Total: 12.91 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 4.79 Total: -14.49 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -2.74 Total: -80.40 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: 0.79 Total: -19.10 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -62.89 5.87 -57.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000529003604.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.511 kcal (2) G-P(sol) polarization free energy of solvation -62.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds