Wall clock time and date at job start Tue Mar 31 2020 07:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46918 * 2 1 4 4 C 1.53003 * 109.46918 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.46896 * 179.97438 * 4 3 2 6 6 O 1.42909 * 109.47011 * 180.02562 * 5 4 3 7 7 C 1.42894 * 114.00152 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47341 * 179.97438 * 7 6 5 9 9 O 1.21272 * 119.99508 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00216 * 180.02562 * 8 7 6 11 11 C 1.39465 * 120.00233 * 184.86792 * 10 8 7 12 12 C 1.38589 * 119.58234 * 182.94142 * 11 10 8 13 13 C 1.40816 * 118.79790 * 179.69963 * 12 11 10 14 14 C 1.41538 * 120.99738 * 180.25413 * 13 12 11 15 15 H 1.07999 * 119.99728 * 154.03351 * 14 13 12 16 16 C 1.40034 * 120.00212 * 334.03423 * 14 13 12 17 17 N 1.30746 * 119.99914 * 163.02401 * 16 14 13 18 18 Si 1.86799 * 120.00021 * 343.02486 * 16 14 13 19 19 H 1.48505 * 109.47192 * 95.20260 * 18 16 14 20 20 H 1.48494 * 109.47203 * 215.20563 * 18 16 14 21 21 H 1.48501 * 109.47248 * 335.20625 * 18 16 14 22 22 C 1.41170 * 118.00291 * 0.28131 * 13 12 11 23 23 C 1.37591 * 119.02128 * 359.97438 * 22 13 12 24 24 N 1.32082 * 121.10528 * 0.02562 * 23 22 13 25 25 H 1.08999 * 109.47143 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47257 * 300.00193 * 1 2 3 27 27 H 1.08996 * 109.47137 * 60.00240 * 1 2 3 28 28 H 1.08992 * 109.47014 * 239.99515 * 2 1 3 29 29 H 1.09005 * 109.47005 * 119.99636 * 2 1 3 30 30 H 1.09004 * 109.47314 * 59.99842 * 3 2 1 31 31 H 1.09005 * 109.46985 * 299.99648 * 3 2 1 32 32 H 1.09004 * 109.47257 * 59.99807 * 4 3 2 33 33 H 1.09005 * 109.47005 * 299.99636 * 4 3 2 34 34 H 1.08992 * 109.47606 * 59.99974 * 5 4 3 35 35 H 1.09002 * 109.47127 * 299.99164 * 5 4 3 36 36 H 1.09004 * 109.47224 * 59.99625 * 7 6 5 37 37 H 1.08998 * 109.47114 * 299.99843 * 7 6 5 38 38 H 0.97004 * 119.99839 * 4.86706 * 10 8 7 39 39 H 1.08004 * 120.60198 * 359.97438 * 12 11 10 40 40 H 0.96993 * 119.99563 * 180.02562 * 17 16 14 41 41 H 1.08002 * 120.48938 * 179.97438 * 22 13 12 42 42 H 1.07992 * 119.44658 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8850 0.0000 6 8 5.5090 2.8850 0.0000 7 6 6.0903 4.1904 -0.0012 8 6 7.5926 4.0715 -0.0004 9 8 8.1141 2.9766 0.0014 10 7 8.3565 5.1818 -0.0008 11 6 9.7433 5.0741 -0.1026 12 6 10.5246 6.2171 -0.0405 13 6 11.9235 6.0886 -0.1387 14 6 12.7660 7.2242 -0.0757 15 1 13.7859 7.1217 0.2642 16 6 12.2770 8.4807 -0.4540 17 7 12.9134 9.5650 -0.0952 18 14 10.7155 8.6076 -1.4713 19 1 9.5545 8.8253 -0.5712 20 1 10.8309 9.7483 -2.4150 21 1 10.5195 7.3501 -2.2365 22 6 12.4603 4.7933 -0.3024 23 6 11.6037 3.7180 -0.3585 24 7 10.2965 3.8811 -0.2624 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9564 -0.8901 32 1 3.9338 0.9285 -0.8891 33 1 3.9330 0.9289 0.8909 34 1 3.7163 3.3994 0.8894 35 1 3.7171 3.3983 -0.8905 36 1 5.7686 4.7322 0.8883 37 1 5.7687 4.7305 -0.8916 38 1 7.9418 6.0559 0.0698 39 1 10.0692 7.1883 0.0853 40 1 12.5745 10.4352 -0.3570 41 1 13.5275 4.6485 -0.3824 42 1 12.0070 2.7239 -0.4832 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532184385.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:47 Heat of formation + Delta-G solvation = -62.902142 kcal Electronic energy + Delta-G solvation = -22137.233971 eV Core-core repulsion = 18695.924457 eV Total energy + Delta-G solvation = -3441.309513 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.87795 -38.48704 -37.52937 -35.91319 -34.40754 -33.82432 -31.75851 -31.33758 -29.57269 -27.63333 -26.06028 -25.72087 -22.42288 -22.19401 -21.79913 -21.27517 -19.83678 -17.81325 -17.31422 -16.76637 -16.72956 -15.83221 -15.72609 -15.40344 -14.76411 -14.60775 -14.37031 -14.08570 -13.90461 -13.59129 -13.42367 -13.04552 -12.96292 -12.71235 -12.56699 -12.16147 -11.66234 -11.62310 -11.39605 -11.33603 -11.03237 -10.99151 -10.86721 -10.85281 -10.73256 -10.03680 -9.89033 -9.81356 -9.53944 -9.35912 -8.27264 -7.88721 -7.27713 -7.11659 -4.77135 2.26763 2.60337 2.90326 2.94646 3.04493 3.19185 3.29055 3.83861 3.90359 4.53133 4.56162 4.59131 4.74205 4.80588 4.85118 5.00778 5.08729 5.13010 5.15523 5.23992 5.39766 5.40962 5.43253 5.53517 5.68113 5.72227 5.74159 5.85465 5.98865 6.04577 6.26781 6.33362 6.38019 6.54985 6.90486 6.94678 7.10382 7.23241 7.55272 7.70438 7.99497 8.16886 8.39699 8.61325 8.65785 9.44063 9.89311 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.031767 B = 0.002590 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.211580 B =10807.654104 C =11526.480189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.117 4.117 4 C -0.120 4.120 5 C 0.060 3.940 6 O -0.362 6.362 7 C 0.046 3.954 8 C 0.498 3.502 9 O -0.453 6.453 10 N -0.663 5.663 11 C 0.372 3.628 12 C -0.322 4.322 13 C 0.127 3.873 14 C -0.434 4.434 15 H 0.096 0.904 16 C 0.085 3.915 17 N -0.797 5.797 18 Si 0.919 3.081 19 H -0.271 1.271 20 H -0.291 1.291 21 H -0.243 1.243 22 C -0.273 4.273 23 C 0.130 3.870 24 N -0.558 5.558 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.407 0.593 39 H 0.107 0.893 40 H 0.288 0.712 41 H 0.110 0.890 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.565 -7.097 -0.600 21.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.154 4.154 4 C -0.157 4.157 5 C -0.017 4.017 6 O -0.280 6.280 7 C -0.034 4.034 8 C 0.281 3.719 9 O -0.320 6.320 10 N -0.311 5.311 11 C 0.145 3.855 12 C -0.348 4.348 13 C 0.118 3.882 14 C -0.464 4.464 15 H 0.114 0.886 16 C -0.137 4.137 17 N -0.420 5.420 18 Si 0.746 3.254 19 H -0.198 1.198 20 H -0.219 1.219 21 H -0.167 1.167 22 C -0.297 4.297 23 C -0.022 4.022 24 N -0.278 5.278 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.242 0.758 39 H 0.124 0.876 40 H 0.099 0.901 41 H 0.128 0.872 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -20.600 -8.620 -0.631 22.340 hybrid contribution -0.413 1.940 -0.273 2.002 sum -21.013 -6.680 -0.904 22.068 Atomic orbital electron populations 1.21780 0.95870 1.01623 1.01763 1.21521 0.95766 0.96629 1.02370 1.21536 0.94432 0.97266 1.02194 1.21527 0.94902 0.95481 1.03817 1.22583 0.80829 0.98153 1.00106 1.88017 1.19226 1.25351 1.95399 1.22209 0.92159 0.86736 1.02322 1.20257 0.88030 0.85111 0.78479 1.90813 1.73613 1.25493 1.42129 1.43403 1.05167 1.09401 1.73171 1.17945 0.82105 0.90727 0.94760 1.21135 0.94847 0.96015 1.22809 1.17669 0.90586 0.93372 0.86545 1.19533 1.00205 0.89637 1.36986 0.88644 1.26238 0.98346 0.94943 0.94128 1.69642 1.38629 0.99469 1.34286 0.86213 0.80420 0.78833 0.79973 1.19758 1.21871 1.16657 1.21874 0.99513 0.93515 1.14762 1.21898 0.88049 0.97597 0.94667 1.67309 1.13268 1.22811 1.24388 0.92761 0.92777 0.92773 0.91829 0.91830 0.91838 0.91835 0.90892 0.90890 0.93267 0.93281 0.90493 0.90449 0.75786 0.87571 0.90123 0.87181 0.85212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.13 -0.83 5.93 -26.73 -0.16 -0.99 16 3 C -0.12 -0.81 5.21 -26.73 -0.14 -0.95 16 4 C -0.12 -1.09 5.58 -26.73 -0.15 -1.24 16 5 C 0.06 0.60 5.94 37.15 0.22 0.82 16 6 O -0.36 -5.24 9.88 -55.14 -0.54 -5.78 16 7 C 0.05 0.59 6.42 36.01 0.23 0.82 16 8 C 0.50 9.18 7.86 -10.99 -0.09 9.10 16 9 O -0.45 -10.59 14.77 -14.35 -0.21 -10.80 16 10 N -0.66 -12.29 5.39 -11.49 -0.06 -12.35 16 11 C 0.37 8.60 7.41 -154.70 -1.15 7.46 16 12 C -0.32 -7.66 7.01 -38.48 -0.27 -7.93 16 13 C 0.13 3.19 5.23 -106.55 -0.56 2.63 16 14 C -0.43 -11.35 9.66 -37.65 -0.36 -11.71 16 15 H 0.10 2.60 8.06 -52.49 -0.42 2.17 16 16 C 0.08 2.12 5.45 -17.34 -0.09 2.03 16 17 N -0.80 -20.23 13.92 55.55 0.77 -19.46 16 18 Si 0.92 19.77 24.42 -169.99 -4.15 15.62 16 19 H -0.27 -5.43 6.70 56.52 0.38 -5.05 16 20 H -0.29 -6.05 7.11 56.52 0.40 -5.65 16 21 H -0.24 -5.49 6.66 56.52 0.38 -5.12 16 22 C -0.27 -6.40 9.90 -38.71 -0.38 -6.79 16 23 C 0.13 2.98 11.15 -17.68 -0.20 2.78 16 24 N -0.56 -13.77 7.87 -12.53 -0.10 -13.87 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.41 5.85 8.69 -40.82 -0.35 5.49 16 39 H 0.11 2.39 4.23 -52.48 -0.22 2.17 16 40 H 0.29 6.57 8.29 -40.82 -0.34 6.23 16 41 H 0.11 2.37 8.06 -52.49 -0.42 1.94 16 42 H 0.13 2.57 8.06 -52.49 -0.42 2.15 16 LS Contribution 350.62 15.07 5.28 5.28 Total: -1.00 -32.37 350.62 -8.26 -40.64 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -6.52 Total: 5.21 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -2.73 Total: -4.49 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.61 Total: -45.68 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.76 Total: -16.58 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.15 Total: 15.62 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.37 -8.26 -40.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532184385.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.267 kcal (2) G-P(sol) polarization free energy of solvation -32.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds