Wall clock time and date at job start Tue Mar 31 2020 07:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46918 * 2 1 4 4 C 1.53003 * 109.46918 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.46896 * 179.97438 * 4 3 2 6 6 O 1.42909 * 109.47011 * 180.02562 * 5 4 3 7 7 C 1.42894 * 114.00152 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47341 * 179.97438 * 7 6 5 9 9 O 1.21272 * 119.99508 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00216 * 180.02562 * 8 7 6 11 11 C 1.39465 * 120.00233 * 184.86792 * 10 8 7 12 12 C 1.38589 * 119.58234 * 182.94142 * 11 10 8 13 13 C 1.40816 * 118.79790 * 179.69963 * 12 11 10 14 14 C 1.41538 * 120.99738 * 180.25413 * 13 12 11 15 15 H 1.07999 * 119.99728 * 154.03351 * 14 13 12 16 16 C 1.40034 * 120.00212 * 334.03423 * 14 13 12 17 17 N 1.30746 * 119.99914 * 163.02401 * 16 14 13 18 18 Si 1.86799 * 120.00021 * 343.02486 * 16 14 13 19 19 H 1.48505 * 109.47192 * 95.20260 * 18 16 14 20 20 H 1.48494 * 109.47203 * 215.20563 * 18 16 14 21 21 H 1.48501 * 109.47248 * 335.20625 * 18 16 14 22 22 C 1.41170 * 118.00291 * 0.28131 * 13 12 11 23 23 C 1.37591 * 119.02128 * 359.97438 * 22 13 12 24 24 N 1.32082 * 121.10528 * 0.02562 * 23 22 13 25 25 H 1.08999 * 109.47143 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47257 * 300.00193 * 1 2 3 27 27 H 1.08996 * 109.47137 * 60.00240 * 1 2 3 28 28 H 1.08992 * 109.47014 * 239.99515 * 2 1 3 29 29 H 1.09005 * 109.47005 * 119.99636 * 2 1 3 30 30 H 1.09004 * 109.47314 * 59.99842 * 3 2 1 31 31 H 1.09005 * 109.46985 * 299.99648 * 3 2 1 32 32 H 1.09004 * 109.47257 * 59.99807 * 4 3 2 33 33 H 1.09005 * 109.47005 * 299.99636 * 4 3 2 34 34 H 1.08992 * 109.47606 * 59.99974 * 5 4 3 35 35 H 1.09002 * 109.47127 * 299.99164 * 5 4 3 36 36 H 1.09004 * 109.47224 * 59.99625 * 7 6 5 37 37 H 1.08998 * 109.47114 * 299.99843 * 7 6 5 38 38 H 0.97004 * 119.99839 * 4.86706 * 10 8 7 39 39 H 1.08004 * 120.60198 * 359.97438 * 12 11 10 40 40 H 0.96993 * 119.99563 * 180.02562 * 17 16 14 41 41 H 1.08002 * 120.48938 * 179.97438 * 22 13 12 42 42 H 1.07992 * 119.44658 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0799 2.8850 0.0000 6 8 5.5090 2.8850 0.0000 7 6 6.0903 4.1904 -0.0012 8 6 7.5926 4.0715 -0.0004 9 8 8.1141 2.9766 0.0014 10 7 8.3565 5.1818 -0.0008 11 6 9.7433 5.0741 -0.1026 12 6 10.5246 6.2171 -0.0405 13 6 11.9235 6.0886 -0.1387 14 6 12.7660 7.2242 -0.0757 15 1 13.7859 7.1217 0.2642 16 6 12.2770 8.4807 -0.4540 17 7 12.9134 9.5650 -0.0952 18 14 10.7155 8.6076 -1.4713 19 1 9.5545 8.8253 -0.5712 20 1 10.8309 9.7483 -2.4150 21 1 10.5195 7.3501 -2.2365 22 6 12.4603 4.7933 -0.3024 23 6 11.6037 3.7180 -0.3585 24 7 10.2965 3.8811 -0.2624 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9564 -0.8901 32 1 3.9338 0.9285 -0.8891 33 1 3.9330 0.9289 0.8909 34 1 3.7163 3.3994 0.8894 35 1 3.7171 3.3983 -0.8905 36 1 5.7686 4.7322 0.8883 37 1 5.7687 4.7305 -0.8916 38 1 7.9418 6.0559 0.0698 39 1 10.0692 7.1883 0.0853 40 1 12.5745 10.4352 -0.3570 41 1 13.5275 4.6485 -0.3824 42 1 12.0070 2.7239 -0.4832 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532184385.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:47 Heat of formation + Delta-G solvation = -82.919860 kcal Electronic energy + Delta-G solvation = -22138.102004 eV Core-core repulsion = 18695.924457 eV Total energy + Delta-G solvation = -3442.177547 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.43242 -39.93094 -38.71308 -36.56935 -36.13884 -35.58147 -33.24510 -32.42589 -31.11607 -28.81120 -27.90163 -26.48482 -24.24243 -23.35970 -22.83856 -21.90968 -21.44255 -19.58747 -18.80776 -17.94931 -17.57374 -17.45314 -16.92976 -16.56234 -16.43903 -15.90023 -15.70877 -15.60405 -14.87401 -14.76013 -14.65308 -14.52838 -14.20107 -14.06301 -13.49365 -13.35811 -12.95601 -12.77505 -12.67032 -12.60983 -12.27797 -11.98246 -11.97569 -11.79529 -11.61762 -11.57290 -11.41046 -11.28013 -10.96026 -10.66049 -10.17384 -9.68428 -9.02902 -8.98933 -6.74498 0.51701 0.75397 1.22700 1.39131 1.48962 1.68463 1.75910 2.09490 2.65469 2.88130 3.52251 3.54998 3.97502 4.00937 4.04877 4.17510 4.19340 4.24751 4.32021 4.42925 4.46967 4.53628 4.57476 4.66100 4.70562 4.75375 4.84034 4.88731 5.00314 5.09828 5.09859 5.21192 5.27652 5.31082 5.42561 5.49099 5.49832 5.66547 5.97541 6.11090 6.22336 6.43897 6.52385 6.66243 7.19066 7.67704 8.06517 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.031767 B = 0.002590 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.211580 B =10807.654104 C =11526.480189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.109 4.109 4 C -0.120 4.120 5 C 0.056 3.944 6 O -0.401 6.401 7 C 0.056 3.944 8 C 0.493 3.507 9 O -0.511 6.511 10 N -0.653 5.653 11 C 0.366 3.634 12 C -0.327 4.327 13 C 0.111 3.889 14 C -0.465 4.465 15 H 0.066 0.934 16 C 0.050 3.950 17 N -0.828 5.828 18 Si 0.970 3.030 19 H -0.239 1.239 20 H -0.277 1.277 21 H -0.261 1.261 22 C -0.285 4.285 23 C 0.128 3.872 24 N -0.580 5.580 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.428 0.572 39 H 0.120 0.880 40 H 0.300 0.700 41 H 0.120 0.880 42 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.882 -6.368 -0.968 24.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.147 4.147 4 C -0.157 4.157 5 C -0.020 4.020 6 O -0.320 6.320 7 C -0.023 4.023 8 C 0.280 3.720 9 O -0.382 6.382 10 N -0.303 5.303 11 C 0.138 3.862 12 C -0.353 4.353 13 C 0.103 3.897 14 C -0.495 4.495 15 H 0.084 0.916 16 C -0.168 4.168 17 N -0.453 5.453 18 Si 0.793 3.207 19 H -0.164 1.164 20 H -0.204 1.204 21 H -0.185 1.185 22 C -0.308 4.308 23 C -0.024 4.024 24 N -0.300 5.300 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.267 0.733 39 H 0.137 0.863 40 H 0.111 0.889 41 H 0.139 0.861 42 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -23.951 -7.842 -0.979 25.222 hybrid contribution 0.642 1.607 -0.129 1.735 sum -23.310 -6.236 -1.108 24.155 Atomic orbital electron populations 1.21768 0.95012 1.01959 1.02152 1.21541 0.96518 0.96542 1.01968 1.21489 0.92626 0.97515 1.03044 1.21542 0.96428 0.95267 1.02511 1.22810 0.78600 0.98650 1.01910 1.87975 1.21747 1.26499 1.95818 1.22248 0.87417 0.86923 1.05717 1.21371 0.90431 0.83921 0.76307 1.90786 1.75169 1.27555 1.44670 1.43418 1.03420 1.11028 1.72413 1.18225 0.84239 0.90038 0.93696 1.21235 0.94343 0.96946 1.22754 1.17882 0.91570 0.93603 0.86677 1.19522 0.99437 0.91212 1.39360 0.91585 1.26942 1.01176 0.94127 0.94538 1.69650 1.40187 1.00250 1.35188 0.85441 0.78039 0.78303 0.78956 1.16413 1.20364 1.18524 1.22066 1.00344 0.93367 1.15071 1.22347 0.87741 0.98718 0.93555 1.67447 1.13953 1.23794 1.24807 0.92529 0.92364 0.92376 0.92306 0.92280 0.90909 0.90944 0.92280 0.92216 0.91302 0.91413 0.86707 0.86932 0.73328 0.86252 0.88907 0.86149 0.82489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 71.98 0.71 -0.76 16 2 C -0.13 -1.53 5.93 30.60 0.18 -1.34 16 3 C -0.11 -1.28 5.21 30.60 0.16 -1.12 16 4 C -0.12 -2.02 5.58 30.59 0.17 -1.85 16 5 C 0.06 0.94 5.94 71.98 0.43 1.37 16 6 O -0.40 -10.66 9.88 -129.94 -1.28 -11.95 16 7 C 0.06 1.23 6.42 71.24 0.46 1.69 16 8 C 0.49 17.15 7.86 87.66 0.69 17.84 16 9 O -0.51 -23.61 14.77 16.03 0.24 -23.38 16 10 N -0.65 -22.57 5.39 -308.67 -1.66 -24.23 16 11 C 0.37 16.51 7.41 132.75 0.98 17.49 16 12 C -0.33 -15.21 7.01 22.98 0.16 -15.05 16 13 C 0.11 5.63 5.23 -21.12 -0.11 5.52 16 14 C -0.47 -25.04 9.66 23.52 0.23 -24.81 16 15 H 0.07 3.80 8.06 -2.91 -0.02 3.78 16 16 C 0.05 2.53 5.45 85.29 0.47 3.00 16 17 N -0.83 -42.28 13.92 21.84 0.30 -41.98 16 18 Si 0.97 39.24 24.42 68.60 1.68 40.91 16 19 H -0.24 -8.44 6.70 99.48 0.67 -7.77 16 20 H -0.28 -10.52 7.11 99.48 0.71 -9.81 16 21 H -0.26 -11.28 6.66 99.48 0.66 -10.62 16 22 C -0.29 -13.50 9.90 22.84 0.23 -13.27 16 23 C 0.13 5.85 11.15 84.50 0.94 6.79 16 24 N -0.58 -28.31 7.87 -193.54 -1.52 -29.83 16 25 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.43 10.71 8.69 -92.71 -0.81 9.90 16 39 H 0.12 5.11 4.23 -2.91 -0.01 5.10 16 40 H 0.30 13.54 8.29 -92.71 -0.77 12.77 16 41 H 0.12 5.29 8.06 -2.91 -0.02 5.26 16 42 H 0.16 6.09 8.06 -2.91 -0.02 6.07 16 Total: -1.00 -72.16 350.62 3.57 -68.59 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 0.12 Total: 26.37 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: 5.69 Total: -4.50 kcal Atomic # 7 Polarization: -93.16 SS G_CDS: -2.88 Total: -96.04 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -1.05 Total: -35.33 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 1.68 Total: 40.91 kcal Total: -72.16 3.57 -68.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532184385.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.326 kcal (2) G-P(sol) polarization free energy of solvation -72.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds