Wall clock time and date at job start Tue Mar 31 2020 07:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47408 * 2 1 4 4 C 1.53004 * 109.46850 * 239.99639 * 2 1 3 5 5 C 1.53008 * 109.46984 * 119.99987 * 2 1 3 6 6 N 1.46904 * 109.46854 * 62.76274 * 5 2 1 7 7 C 1.46905 * 110.99329 * 203.48645 * 6 5 2 8 8 C 1.50697 * 109.47120 * 66.04591 * 7 6 5 9 9 H 1.08002 * 120.00356 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99793 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00117 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99940 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47022 * 60.00065 * 12 10 8 14 14 H 1.48493 * 109.46996 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46910 * 300.00043 * 12 10 8 16 16 C 1.39678 * 111.00104 * 79.53294 * 6 5 2 17 17 C 1.38937 * 120.07243 * 55.85278 * 16 6 5 18 18 C 1.38081 * 119.92294 * 180.02562 * 17 16 6 19 19 C 1.38310 * 120.07196 * 359.71814 * 18 17 16 20 20 C 1.38266 * 120.15009 * 0.55205 * 19 18 17 21 21 C 1.38120 * 120.07397 * 359.45353 * 20 19 18 22 22 N 1.48002 * 120.03851 * 180.29753 * 21 20 19 23 23 O 1.21806 * 119.99921 * 353.92416 * 22 21 20 24 24 O 1.21798 * 120.00345 * 173.93202 * 22 21 20 25 25 H 1.09001 * 109.46604 * 306.14289 * 1 2 3 26 26 H 1.08997 * 109.46987 * 66.13882 * 1 2 3 27 27 H 1.08998 * 109.47428 * 186.14390 * 1 2 3 28 28 H 1.09003 * 109.47250 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46964 * 299.99948 * 3 2 1 30 30 H 1.08998 * 109.47247 * 59.99972 * 3 2 1 31 31 H 1.09006 * 109.46813 * 311.01681 * 4 2 1 32 32 H 1.09003 * 109.47044 * 71.01544 * 4 2 1 33 33 H 1.08993 * 109.47047 * 191.01664 * 4 2 1 34 34 H 1.08997 * 109.47128 * 302.75829 * 5 2 1 35 35 H 1.09002 * 109.46613 * 182.75641 * 5 2 1 36 36 H 1.09000 * 109.46566 * 186.04590 * 7 6 5 37 37 H 1.08996 * 109.47234 * 306.04167 * 7 6 5 38 38 H 0.97004 * 119.99947 * 180.02562 * 11 10 8 39 39 H 1.07998 * 120.03969 * 359.97438 * 17 16 6 40 40 H 1.07993 * 119.96234 * 179.97438 * 18 17 16 41 41 H 1.08004 * 119.92415 * 180.28097 * 19 18 17 42 42 H 1.07997 * 119.96176 * 179.72515 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2493 5 6 2.0400 -0.7213 1.2493 6 7 1.6055 -2.1242 1.2163 7 6 1.5679 -2.6955 2.5692 8 6 0.4968 -2.0072 3.3755 9 1 -0.0970 -1.2241 2.9276 10 6 0.2741 -2.3781 4.6847 11 7 0.9960 -3.3327 5.2296 12 14 -1.0541 -1.5255 5.6839 13 1 -2.3711 -1.7219 5.0264 14 1 -1.0929 -2.1037 7.0511 15 1 -0.7547 -0.0734 5.7683 16 6 2.4239 -2.8821 0.3755 17 6 3.7971 -2.9137 0.5841 18 6 4.6033 -3.6635 -0.2493 19 6 4.0445 -4.3871 -1.2872 20 6 2.6789 -4.3533 -1.5009 21 6 1.8667 -3.6053 -0.6711 22 7 0.4043 -3.5749 -0.8966 23 8 -0.0721 -4.1181 -1.8772 24 8 -0.3229 -3.0067 -0.1017 25 1 -0.3632 0.6061 0.8299 26 1 -0.3633 0.4157 -0.9398 27 1 -0.3634 -1.0217 0.1100 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.5251 -1.6766 -1.3528 32 1 1.8458 -0.1068 -2.1283 33 1 3.1120 -0.8946 -1.1566 34 1 1.6368 -0.2368 2.1386 35 1 3.1289 -0.6786 1.2743 36 1 1.3479 -3.7613 2.5075 37 1 2.5347 -2.5514 3.0515 38 1 0.8391 -3.5938 6.1505 39 1 4.2337 -2.3519 1.3966 40 1 5.6708 -3.6883 -0.0880 41 1 4.6768 -4.9763 -1.9348 42 1 2.2463 -4.9159 -2.3149 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533928430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:11 Heat of formation + Delta-G solvation = 36.872126 kcal Electronic energy + Delta-G solvation = -25379.944708 eV Core-core repulsion = 21942.961732 eV Total energy + Delta-G solvation = -3436.982976 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.65987 -39.84695 -37.50929 -35.73750 -34.92654 -32.62910 -31.74558 -29.97052 -27.19432 -26.88706 -26.65664 -25.97368 -24.96954 -22.89196 -21.90640 -20.73560 -18.70246 -18.57436 -17.89677 -16.89847 -16.55599 -16.06766 -15.31612 -15.04612 -14.75157 -14.31982 -14.17878 -13.96494 -13.62339 -13.19628 -12.60110 -12.44591 -12.28237 -12.01117 -11.96254 -11.74174 -11.41939 -11.28718 -11.07241 -10.85188 -10.83528 -10.76466 -10.61025 -10.41623 -10.28854 -10.07086 -10.05106 -9.86771 -9.40034 -9.25900 -8.69337 -8.49059 -7.60422 -6.08213 -4.08992 0.34556 1.14118 1.87539 2.06307 3.33732 3.37958 3.42064 3.50825 4.19024 4.46616 4.66138 4.82738 4.98862 5.11141 5.14716 5.21602 5.26419 5.28521 5.41833 5.63153 5.77193 5.80760 5.91788 5.92675 6.00730 6.06316 6.16321 6.20763 6.23410 6.33546 6.37235 6.47946 6.50287 6.63977 6.78345 6.93617 7.04803 7.08190 7.33718 7.71329 7.82708 8.00798 8.37644 8.43936 8.97634 9.54990 11.02766 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014229 B = 0.006649 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.319475 B = 4209.901993 C = 4601.558059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.064 4.064 3 C -0.138 4.138 4 C -0.143 4.143 5 C 0.072 3.928 6 N -0.495 5.495 7 C 0.208 3.792 8 C -0.502 4.502 9 H 0.071 0.929 10 C 0.057 3.943 11 N -0.900 5.900 12 Si 0.900 3.100 13 H -0.273 1.273 14 H -0.289 1.289 15 H -0.277 1.277 16 C 0.197 3.803 17 C -0.162 4.162 18 C -0.064 4.064 19 C -0.142 4.142 20 C -0.059 4.059 21 C -0.035 4.035 22 N 0.028 4.972 23 O -0.229 6.229 24 O -0.071 6.071 25 H 0.050 0.950 26 H 0.034 0.966 27 H 0.097 0.903 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.100 0.900 35 H 0.028 0.972 36 H 0.029 0.971 37 H -0.002 1.002 38 H 0.262 0.738 39 H 0.141 0.859 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.995 2.744 -11.891 14.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.065 4.065 3 C -0.196 4.196 4 C -0.200 4.200 5 C -0.054 4.054 6 N -0.217 5.217 7 C 0.086 3.914 8 C -0.541 4.541 9 H 0.089 0.911 10 C -0.144 4.144 11 N -0.539 5.539 12 Si 0.728 3.272 13 H -0.199 1.199 14 H -0.215 1.215 15 H -0.203 1.203 16 C 0.100 3.900 17 C -0.183 4.183 18 C -0.083 4.083 19 C -0.160 4.160 20 C -0.079 4.079 21 C -0.120 4.120 22 N 0.547 4.453 23 O -0.424 6.424 24 O -0.307 6.307 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.115 0.885 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.118 0.882 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.016 0.984 38 H 0.072 0.928 39 H 0.159 0.841 40 H 0.151 0.849 41 H 0.156 0.844 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 8.227 2.513 -11.916 14.697 hybrid contribution -0.129 0.299 0.874 0.932 sum 8.098 2.813 -11.043 13.979 Atomic orbital electron populations 1.21979 0.93401 1.05167 0.99589 1.20560 0.97249 0.94071 0.94580 1.21844 1.00217 0.95957 1.01571 1.22159 0.99863 1.00498 0.97502 1.22308 0.96508 0.87692 0.98934 1.60049 1.46698 1.01143 1.13779 1.19799 0.96731 0.95609 0.79230 1.21031 1.17720 1.19951 0.95353 0.91060 1.24960 0.96477 0.95235 0.97756 1.69942 1.40275 1.29465 1.14256 0.86519 0.82404 0.79498 0.78808 1.19865 1.21499 1.20250 1.18987 0.90708 0.90044 0.90267 1.21895 0.93371 1.01852 1.01132 1.21395 1.00406 0.93417 0.93051 1.21016 0.93541 1.01734 0.99740 1.20919 0.93532 0.95816 0.97625 1.21105 0.80839 1.08236 1.01804 1.43427 1.03179 0.98856 0.99818 1.94457 1.78261 1.48385 1.21343 1.94614 1.57286 1.38996 1.39792 0.93057 0.94703 0.88477 0.93384 0.93037 0.92405 0.93048 0.93459 0.93542 0.88195 0.95344 0.95257 0.98394 0.92813 0.84146 0.84853 0.84413 0.83613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.40 37.16 0.31 -2.16 16 2 C -0.06 -1.01 0.85 -154.50 -0.13 -1.14 16 3 C -0.14 -1.83 8.45 37.16 0.31 -1.52 16 4 C -0.14 -2.20 7.04 37.16 0.26 -1.93 16 5 C 0.07 1.29 3.87 -3.82 -0.01 1.28 16 6 N -0.50 -9.96 1.63 -172.46 -0.28 -10.25 16 7 C 0.21 5.09 4.42 -4.97 -0.02 5.07 16 8 C -0.50 -13.34 8.19 -34.44 -0.28 -13.62 16 9 H 0.07 1.88 7.37 -52.49 -0.39 1.49 16 10 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 11 N -0.90 -25.88 13.29 55.43 0.74 -25.15 16 12 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 C 0.20 3.50 2.52 -83.79 -0.21 3.29 16 17 C -0.16 -2.40 8.10 -39.38 -0.32 -2.72 16 18 C -0.06 -0.73 10.04 -39.61 -0.40 -1.13 16 19 C -0.14 -1.57 10.04 -39.54 -0.40 -1.96 16 20 C -0.06 -0.82 9.55 -39.61 -0.38 -1.20 16 21 C -0.04 -0.62 4.79 -79.76 -0.38 -1.00 16 22 N 0.03 0.56 3.62 34.05 0.12 0.68 16 23 O -0.23 -4.50 18.46 -29.46 -0.54 -5.04 16 24 O -0.07 -1.57 14.21 -29.46 -0.42 -1.99 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.10 1.92 4.47 -51.93 -0.23 1.69 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.87 3.77 -51.93 -0.20 0.67 16 32 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 33 H 0.05 0.67 7.38 -51.93 -0.38 0.29 16 34 H 0.10 1.98 6.58 -51.93 -0.34 1.64 16 35 H 0.03 0.47 6.38 -51.93 -0.33 0.14 16 36 H 0.03 0.81 8.06 -51.93 -0.42 0.39 16 37 H 0.00 -0.04 7.92 -51.93 -0.41 -0.45 16 38 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.14 2.04 7.17 -52.49 -0.38 1.66 16 40 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 42 H 0.15 1.78 7.62 -52.49 -0.40 1.38 16 LS Contribution 333.75 15.07 5.03 5.03 Total: -1.00 -29.52 333.75 -8.11 -37.63 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -5.99 Total: 0.14 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -1.74 Total: -17.30 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.58 Total: -34.71 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.96 Total: -7.03 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.52 -8.11 -37.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533928430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.506 kcal (2) G-P(sol) polarization free energy of solvation -29.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds