Wall clock time and date at job start Tue Mar 31 2020 07:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47408 * 2 1 4 4 C 1.53004 * 109.46850 * 239.99639 * 2 1 3 5 5 C 1.53008 * 109.46984 * 119.99987 * 2 1 3 6 6 N 1.46904 * 109.46854 * 62.76274 * 5 2 1 7 7 C 1.46905 * 110.99329 * 203.48645 * 6 5 2 8 8 C 1.50697 * 109.47120 * 66.04591 * 7 6 5 9 9 H 1.08002 * 120.00356 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99793 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00117 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99940 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47022 * 60.00065 * 12 10 8 14 14 H 1.48493 * 109.46996 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46910 * 300.00043 * 12 10 8 16 16 C 1.39678 * 111.00104 * 79.53294 * 6 5 2 17 17 C 1.38937 * 120.07243 * 55.85278 * 16 6 5 18 18 C 1.38081 * 119.92294 * 180.02562 * 17 16 6 19 19 C 1.38310 * 120.07196 * 359.71814 * 18 17 16 20 20 C 1.38266 * 120.15009 * 0.55205 * 19 18 17 21 21 C 1.38120 * 120.07397 * 359.45353 * 20 19 18 22 22 N 1.48002 * 120.03851 * 180.29753 * 21 20 19 23 23 O 1.21806 * 119.99921 * 353.92416 * 22 21 20 24 24 O 1.21798 * 120.00345 * 173.93202 * 22 21 20 25 25 H 1.09001 * 109.46604 * 306.14289 * 1 2 3 26 26 H 1.08997 * 109.46987 * 66.13882 * 1 2 3 27 27 H 1.08998 * 109.47428 * 186.14390 * 1 2 3 28 28 H 1.09003 * 109.47250 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46964 * 299.99948 * 3 2 1 30 30 H 1.08998 * 109.47247 * 59.99972 * 3 2 1 31 31 H 1.09006 * 109.46813 * 311.01681 * 4 2 1 32 32 H 1.09003 * 109.47044 * 71.01544 * 4 2 1 33 33 H 1.08993 * 109.47047 * 191.01664 * 4 2 1 34 34 H 1.08997 * 109.47128 * 302.75829 * 5 2 1 35 35 H 1.09002 * 109.46613 * 182.75641 * 5 2 1 36 36 H 1.09000 * 109.46566 * 186.04590 * 7 6 5 37 37 H 1.08996 * 109.47234 * 306.04167 * 7 6 5 38 38 H 0.97004 * 119.99947 * 180.02562 * 11 10 8 39 39 H 1.07998 * 120.03969 * 359.97438 * 17 16 6 40 40 H 1.07993 * 119.96234 * 179.97438 * 18 17 16 41 41 H 1.08004 * 119.92415 * 180.28097 * 19 18 17 42 42 H 1.07997 * 119.96176 * 179.72515 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7214 -1.2493 5 6 2.0400 -0.7213 1.2493 6 7 1.6055 -2.1242 1.2163 7 6 1.5679 -2.6955 2.5692 8 6 0.4968 -2.0072 3.3755 9 1 -0.0970 -1.2241 2.9276 10 6 0.2741 -2.3781 4.6847 11 7 0.9960 -3.3327 5.2296 12 14 -1.0541 -1.5255 5.6839 13 1 -2.3711 -1.7219 5.0264 14 1 -1.0929 -2.1037 7.0511 15 1 -0.7547 -0.0734 5.7683 16 6 2.4239 -2.8821 0.3755 17 6 3.7971 -2.9137 0.5841 18 6 4.6033 -3.6635 -0.2493 19 6 4.0445 -4.3871 -1.2872 20 6 2.6789 -4.3533 -1.5009 21 6 1.8667 -3.6053 -0.6711 22 7 0.4043 -3.5749 -0.8966 23 8 -0.0721 -4.1181 -1.8772 24 8 -0.3229 -3.0067 -0.1017 25 1 -0.3632 0.6061 0.8299 26 1 -0.3633 0.4157 -0.9398 27 1 -0.3634 -1.0217 0.1100 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.5251 -1.6766 -1.3528 32 1 1.8458 -0.1068 -2.1283 33 1 3.1120 -0.8946 -1.1566 34 1 1.6368 -0.2368 2.1386 35 1 3.1289 -0.6786 1.2743 36 1 1.3479 -3.7613 2.5075 37 1 2.5347 -2.5514 3.0515 38 1 0.8391 -3.5938 6.1505 39 1 4.2337 -2.3519 1.3966 40 1 5.6708 -3.6883 -0.0880 41 1 4.6768 -4.9763 -1.9348 42 1 2.2463 -4.9159 -2.3149 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000533928430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:10 Heat of formation + Delta-G solvation = 22.041255 kcal Electronic energy + Delta-G solvation = -25380.587823 eV Core-core repulsion = 21942.961732 eV Total energy + Delta-G solvation = -3437.626091 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.07602 -41.18350 -38.74710 -37.22867 -36.40052 -34.59531 -32.92817 -31.32113 -28.91495 -28.12328 -27.97829 -27.34931 -26.45380 -24.48529 -23.24568 -22.16575 -20.05183 -19.87262 -19.34166 -18.43905 -18.32477 -17.45184 -16.77511 -16.58368 -15.95234 -15.81099 -15.53197 -15.23172 -14.89446 -14.50561 -14.22471 -13.95420 -13.71349 -13.34713 -13.19463 -12.98718 -12.81552 -12.70734 -12.58277 -12.54552 -12.39934 -12.32318 -12.09654 -11.98433 -11.93268 -11.55030 -11.52973 -11.33215 -11.27336 -10.61347 -10.39448 -9.89685 -9.14218 -8.20498 -6.27591 -0.98491 0.03545 0.53506 0.72504 1.41167 1.45116 1.52110 2.37766 2.43185 2.87617 3.13761 3.55817 3.80007 3.87507 3.95198 4.00912 4.05780 4.14646 4.16275 4.48742 4.54853 4.67918 4.69293 4.82401 4.83817 4.89446 4.91915 4.99674 5.02595 5.08907 5.11585 5.16748 5.18290 5.24164 5.35108 5.40548 5.49960 5.59288 5.71099 5.87713 6.04585 6.16398 6.61474 6.85182 6.88319 7.40450 8.90474 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.014229 B = 0.006649 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.319475 B = 4209.901993 C = 4601.558059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.060 4.060 3 C -0.132 4.132 4 C -0.137 4.137 5 C 0.075 3.925 6 N -0.500 5.500 7 C 0.232 3.768 8 C -0.509 4.509 9 H 0.066 0.934 10 C 0.006 3.994 11 N -0.934 5.934 12 Si 0.962 3.038 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.264 1.264 16 C 0.166 3.834 17 C -0.174 4.174 18 C -0.042 4.042 19 C -0.117 4.117 20 C -0.061 4.061 21 C -0.056 4.056 22 N 0.033 4.967 23 O -0.214 6.214 24 O -0.142 6.142 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.034 0.966 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.042 0.958 36 H -0.012 1.012 37 H -0.020 1.020 38 H 0.263 0.737 39 H 0.138 0.862 40 H 0.179 0.821 41 H 0.189 0.811 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.484 2.944 -13.873 17.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.060 4.060 3 C -0.190 4.190 4 C -0.194 4.194 5 C -0.051 4.051 6 N -0.222 5.222 7 C 0.108 3.892 8 C -0.548 4.548 9 H 0.084 0.916 10 C -0.192 4.192 11 N -0.575 5.575 12 Si 0.787 3.213 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.189 1.189 16 C 0.069 3.931 17 C -0.194 4.194 18 C -0.061 4.061 19 C -0.135 4.135 20 C -0.080 4.080 21 C -0.141 4.141 22 N 0.546 4.454 23 O -0.418 6.418 24 O -0.362 6.362 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.006 0.994 37 H -0.002 1.002 38 H 0.072 0.928 39 H 0.156 0.844 40 H 0.197 0.803 41 H 0.206 0.794 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 10.679 2.793 -13.828 17.693 hybrid contribution -0.740 0.098 1.302 1.501 sum 9.938 2.891 -12.525 16.248 Atomic orbital electron populations 1.21936 0.94867 1.03382 0.99912 1.20520 0.96043 0.95601 0.93850 1.21789 1.01090 0.93872 1.02214 1.22081 1.00166 0.99766 0.97382 1.22280 0.97114 0.86685 0.99005 1.59730 1.48855 1.02163 1.11404 1.19254 0.94961 0.93095 0.81843 1.21313 1.17942 1.19674 0.95841 0.91611 1.25783 0.98580 0.95898 0.98935 1.70058 1.41928 1.30911 1.14563 0.85536 0.79431 0.79069 0.77232 1.20001 1.20962 1.18873 1.19070 0.91780 0.91474 0.90769 1.22000 0.92323 1.02993 1.02124 1.21916 1.02215 0.90714 0.91240 1.21620 0.92472 1.00230 0.99196 1.21351 0.94573 0.94909 0.97209 1.21354 0.79025 1.10179 1.03520 1.43838 1.04487 0.97910 0.99169 1.94389 1.79186 1.47180 1.21002 1.94639 1.58723 1.41835 1.40958 0.93801 0.93363 0.91200 0.91926 0.91501 0.92684 0.94748 0.92141 0.92519 0.91045 0.94003 0.99412 1.00198 0.92792 0.84431 0.80348 0.79376 0.81936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 8.40 71.98 0.60 -4.51 16 2 C -0.06 -1.88 0.85 -52.18 -0.04 -1.92 16 3 C -0.13 -3.30 8.45 71.98 0.61 -2.69 16 4 C -0.14 -4.03 7.04 71.98 0.51 -3.52 16 5 C 0.08 2.79 3.87 86.30 0.33 3.12 16 6 N -0.50 -21.15 1.63 -699.56 -1.14 -22.30 16 7 C 0.23 12.10 4.42 85.56 0.38 12.48 16 8 C -0.51 -28.59 8.19 25.60 0.21 -28.38 16 9 H 0.07 3.68 7.37 -2.91 -0.02 3.66 16 10 C 0.01 0.34 5.46 84.66 0.46 0.80 16 11 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16 12 Si 0.96 44.88 29.54 68.60 2.03 46.90 16 13 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 15 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 16 C 0.17 5.92 2.52 38.21 0.10 6.02 16 17 C -0.17 -4.88 8.10 22.40 0.18 -4.70 16 18 C -0.04 -0.78 10.04 22.25 0.22 -0.55 16 19 C -0.12 -1.96 10.04 22.29 0.22 -1.74 16 20 C -0.06 -1.50 9.55 22.25 0.21 -1.29 16 21 C -0.06 -1.93 4.79 36.51 0.17 -1.76 16 22 N 0.03 1.37 3.62 -46.17 -0.17 1.20 16 23 O -0.21 -8.46 18.46 18.88 0.35 -8.11 16 24 O -0.14 -6.66 14.21 18.89 0.27 -6.40 16 25 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.07 2.96 4.47 -2.39 -0.01 2.95 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.03 1.15 3.77 -2.38 -0.01 1.14 16 32 H 0.06 1.58 8.10 -2.39 -0.02 1.56 16 33 H 0.06 1.52 7.38 -2.39 -0.02 1.50 16 34 H 0.07 3.00 6.58 -2.39 -0.02 2.98 16 35 H 0.04 1.39 6.38 -2.39 -0.02 1.38 16 36 H -0.01 -0.73 8.06 -2.39 -0.02 -0.75 16 37 H -0.02 -1.06 7.92 -2.39 -0.02 -1.08 16 38 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 39 H 0.14 3.88 7.17 -2.91 -0.02 3.86 16 40 H 0.18 1.76 8.06 -2.91 -0.02 1.73 16 41 H 0.19 1.40 8.06 -2.91 -0.02 1.37 16 42 H 0.16 3.42 7.62 -2.91 -0.02 3.40 16 Total: -1.00 -69.79 333.75 6.81 -62.99 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 1.02 Total: 9.81 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: 4.17 Total: -28.64 kcal Atomic # 7 Polarization: -75.53 SS G_CDS: -1.02 Total: -76.55 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: 0.62 Total: -14.50 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -69.79 6.81 -62.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533928430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.028 kcal (2) G-P(sol) polarization free energy of solvation -69.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds