Wall clock time and date at job start Tue Mar 31 2020 06:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47172 * 2 1 4 4 C 1.50692 * 109.47577 * 180.02562 * 3 2 1 5 5 N 1.29935 * 125.38152 * 90.00046 * 4 3 2 6 6 C 1.36068 * 108.48317 * 179.97438 * 5 4 3 7 7 C 1.47415 * 126.44970 * 180.02562 * 6 5 4 8 8 O 1.21613 * 120.00221 * 173.87645 * 7 6 5 9 9 N 1.34781 * 120.00022 * 354.15387 * 7 6 5 10 10 C 1.46927 * 120.62867 * 184.16760 * 9 7 6 11 11 C 1.53621 * 108.54256 * 126.37042 * 10 9 7 12 12 C 1.53039 * 109.24174 * 54.85435 * 11 10 9 13 13 C 1.50704 * 109.45181 * 178.49708 * 12 11 10 14 14 H 1.08003 * 120.00213 * 120.05618 * 13 12 11 15 15 C 1.37875 * 120.00154 * 300.06544 * 13 12 11 16 16 N 1.31513 * 119.99728 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00387 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.46803 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47134 * 119.99807 * 17 15 13 20 20 H 1.48496 * 109.47315 * 240.00126 * 17 15 13 21 21 C 1.53043 * 109.54016 * 298.51304 * 12 11 10 22 22 C 1.46930 * 120.62945 * 4.44711 * 9 7 6 23 23 C 1.36092 * 107.09826 * 0.26135 * 6 5 4 24 24 O 1.34051 * 125.38038 * 269.98153 * 4 3 2 25 25 H 1.08993 * 109.47293 * 59.99977 * 1 2 3 26 26 H 1.09006 * 109.46602 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46856 * 299.99351 * 1 2 3 28 28 H 1.08997 * 109.47288 * 240.00476 * 2 1 3 29 29 H 1.08998 * 109.47971 * 119.99931 * 2 1 3 30 30 H 1.09007 * 109.47132 * 60.00346 * 3 2 1 31 31 H 1.08998 * 109.47441 * 300.00352 * 3 2 1 32 32 H 1.08997 * 109.58317 * 246.20271 * 10 9 7 33 33 H 1.09000 * 109.58678 * 6.62764 * 10 9 7 34 34 H 1.09002 * 109.63410 * 294.86698 * 11 10 9 35 35 H 1.08997 * 109.43543 * 174.72247 * 11 10 9 36 36 H 1.09000 * 109.46465 * 58.53364 * 12 11 10 37 37 H 0.97002 * 120.00297 * 179.97438 * 16 15 13 38 38 H 1.09004 * 109.49196 * 301.41085 * 21 12 11 39 39 H 1.08998 * 109.52577 * 181.33457 * 21 12 11 40 40 H 1.08996 * 109.58310 * 353.37699 * 22 9 7 41 41 H 1.09004 * 109.58143 * 113.65352 * 22 9 7 42 42 H 1.08001 * 126.52097 * 179.74121 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.2988 1.4428 -1.0603 6 6 5.6009 1.4434 -0.6654 7 6 6.7832 1.4444 -1.5459 8 8 7.8963 1.5572 -1.0692 9 7 6.6302 1.3258 -2.8797 10 6 7.8013 1.2336 -3.7622 11 6 7.6564 -0.0212 -4.6366 12 6 6.3165 0.0299 -5.3741 13 6 6.1857 -1.1809 -6.2617 14 1 5.3688 -1.8721 -6.1153 15 6 7.1089 -1.4065 -7.2606 16 7 8.1034 -0.5647 -7.4391 17 14 6.9472 -2.9078 -8.3604 18 1 5.7522 -3.6910 -7.9560 19 1 6.8002 -2.4732 -9.7727 20 1 8.1609 -3.7528 -8.2262 21 6 5.1727 0.0428 -4.3574 22 6 5.2893 1.2926 -3.4794 23 6 5.6062 1.4376 0.6955 24 8 4.3235 1.4429 1.0920 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 7.8524 2.1195 -4.3952 33 1 8.7072 1.1589 -3.1607 34 1 7.6922 -0.9114 -4.0085 35 1 8.4697 -0.0539 -5.3615 36 1 6.2712 0.9329 -5.9829 37 1 8.7531 -0.7235 -8.1416 38 1 5.2319 -0.8481 -3.7320 39 1 4.2180 0.0553 -4.8832 40 1 4.5374 1.2570 -2.6911 41 1 5.1389 2.1845 -4.0877 42 1 6.4767 1.4325 1.3348 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000544822276.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:43 Heat of formation + Delta-G solvation = -20.141313 kcal Electronic energy + Delta-G solvation = -23695.245841 eV Core-core repulsion = 20255.790576 eV Total energy + Delta-G solvation = -3439.455264 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -43.53977 -39.44020 -36.73923 -35.72716 -34.88131 -33.38164 -31.06570 -30.80650 -29.95658 -27.41624 -26.26117 -24.26172 -22.80359 -22.49991 -22.01584 -21.18154 -19.91928 -18.67288 -17.28578 -16.87889 -16.68677 -16.15593 -15.53616 -15.32071 -14.85085 -14.60705 -14.49947 -13.91097 -13.63074 -13.24590 -13.14279 -12.77038 -12.59747 -12.48177 -12.21954 -12.10881 -11.95958 -11.71334 -11.26390 -11.11231 -11.06174 -10.93507 -10.65075 -10.47128 -10.12423 -10.00908 -9.76873 -9.50784 -9.09124 -8.86880 -8.75364 -8.32237 -7.91594 -5.97510 -4.03915 1.10273 1.97115 2.45645 3.30101 3.35162 3.38411 3.42027 3.54231 3.79009 4.44783 4.56712 4.61348 4.68869 4.84094 4.96425 5.17966 5.28797 5.31888 5.41816 5.46039 5.56004 5.57994 5.76641 5.82170 5.94961 5.99481 6.02272 6.10847 6.29672 6.41618 6.48863 6.71054 6.88519 6.99378 7.08453 7.28048 7.36699 7.47374 7.74407 7.95588 8.01140 8.11648 8.46122 8.51443 8.99905 9.60865 11.07865 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016789 B = 0.004195 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.310804 B = 6672.839465 C = 8012.569830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.024 4.024 4 C 0.194 3.806 5 N -0.449 5.449 6 C -0.054 4.054 7 C 0.589 3.411 8 O -0.556 6.556 9 N -0.576 5.576 10 C 0.107 3.893 11 C -0.121 4.121 12 C 0.046 3.954 13 C -0.510 4.510 14 H 0.055 0.945 15 C 0.060 3.940 16 N -0.891 5.891 17 Si 0.890 3.110 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.118 4.118 22 C 0.060 3.940 23 C 0.002 3.998 24 O -0.197 6.197 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.037 0.963 35 H 0.104 0.896 36 H 0.026 0.974 37 H 0.259 0.741 38 H 0.047 0.953 39 H 0.058 0.942 40 H 0.141 0.859 41 H 0.054 0.946 42 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.274 4.729 16.346 20.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.062 4.062 4 C -0.013 4.013 5 N -0.179 5.179 6 C -0.174 4.174 7 C 0.375 3.625 8 O -0.436 6.436 9 N -0.305 5.305 10 C -0.015 4.015 11 C -0.159 4.159 12 C 0.027 3.973 13 C -0.549 4.549 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.718 3.282 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.156 4.156 22 C -0.062 4.062 23 C -0.071 4.071 24 O -0.083 6.083 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.127 0.873 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.122 0.878 36 H 0.044 0.956 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.157 0.843 41 H 0.072 0.928 42 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -11.775 4.816 15.842 20.318 hybrid contribution 0.434 -0.851 -0.175 0.971 sum -11.341 3.966 15.667 19.743 Atomic orbital electron populations 1.21747 0.94548 1.02377 1.02150 1.21564 0.96584 0.94581 1.03524 1.20252 0.80779 0.99756 1.05446 1.26597 0.96441 0.99629 0.78673 1.70486 1.01108 1.18382 1.27929 1.21974 0.92007 1.10319 0.93070 1.16850 0.85888 0.77706 0.82035 1.90765 1.24622 1.52955 1.75270 1.48094 1.09461 1.68151 1.04816 1.22073 0.86862 1.00579 0.91941 1.22080 1.03701 0.92850 0.97280 1.18680 0.89503 0.97371 0.91741 1.21253 1.10577 1.08594 1.14427 0.92721 1.24973 0.95368 0.96415 0.97289 1.69857 1.14332 1.36264 1.32582 0.86571 0.77950 0.83161 0.80525 1.19874 1.21069 1.21095 1.21927 1.00555 0.95489 0.97632 1.23071 0.84134 0.98837 1.00184 1.25209 0.84637 1.01633 0.95652 1.84362 1.16756 1.69407 1.37822 0.92122 0.92116 0.92522 0.90571 0.91450 0.88797 0.87268 0.92045 0.90618 0.94406 0.87814 0.95561 0.93067 0.93390 0.92384 0.84267 0.92803 0.75402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.12 -0.90 5.92 -26.73 -0.16 -1.05 16 3 C -0.02 -0.18 5.84 -27.89 -0.16 -0.34 16 4 C 0.19 2.22 7.56 -13.08 -0.10 2.12 16 5 N -0.45 -6.52 7.67 -7.66 -0.06 -6.58 16 6 C -0.05 -0.86 6.75 -83.02 -0.56 -1.42 16 7 C 0.59 11.32 7.69 -12.52 -0.10 11.22 16 8 O -0.56 -11.68 16.33 5.27 0.09 -11.60 16 9 N -0.58 -11.51 2.97 -173.78 -0.52 -12.02 16 10 C 0.11 2.27 6.45 -3.49 -0.02 2.24 16 11 C -0.12 -2.91 5.17 -26.39 -0.14 -3.05 16 12 C 0.05 1.14 2.06 -91.73 -0.19 0.95 16 13 C -0.51 -14.01 8.56 -34.44 -0.29 -14.30 16 14 H 0.05 1.49 7.74 -52.48 -0.41 1.09 16 15 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 16 N -0.89 -25.31 11.31 55.43 0.63 -24.69 16 17 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 C -0.12 -2.50 5.30 -26.61 -0.14 -2.64 16 22 C 0.06 1.13 6.32 -3.71 -0.02 1.10 16 23 C 0.00 0.02 11.95 29.96 0.36 0.38 16 24 O -0.20 -2.26 10.73 6.50 0.07 -2.19 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.08 1.60 7.03 -51.93 -0.37 1.23 16 34 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.10 2.75 6.03 -51.93 -0.31 2.44 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.14 2.41 3.62 -80.49 -0.29 2.12 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.23 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 341.26 15.07 5.14 5.14 Total: -1.00 -31.59 341.26 -7.35 -38.94 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -6.43 Total: 0.38 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -1.25 Total: -3.69 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.05 Total: -43.29 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: 0.16 Total: -13.79 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.59 -7.35 -38.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544822276.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.802 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds