Wall clock time and date at job start Tue Mar 31 2020 06:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47172 * 2 1 4 4 C 1.50692 * 109.47577 * 180.02562 * 3 2 1 5 5 N 1.29935 * 125.38152 * 90.00046 * 4 3 2 6 6 C 1.36068 * 108.48317 * 179.97438 * 5 4 3 7 7 C 1.47415 * 126.44970 * 180.02562 * 6 5 4 8 8 O 1.21613 * 120.00221 * 173.87645 * 7 6 5 9 9 N 1.34781 * 120.00022 * 354.15387 * 7 6 5 10 10 C 1.46927 * 120.62867 * 184.16760 * 9 7 6 11 11 C 1.53621 * 108.54256 * 126.37042 * 10 9 7 12 12 C 1.53039 * 109.24174 * 54.85435 * 11 10 9 13 13 C 1.50704 * 109.45181 * 178.49708 * 12 11 10 14 14 H 1.08003 * 120.00213 * 120.05618 * 13 12 11 15 15 C 1.37875 * 120.00154 * 300.06544 * 13 12 11 16 16 N 1.31513 * 119.99728 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00387 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.46803 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47134 * 119.99807 * 17 15 13 20 20 H 1.48496 * 109.47315 * 240.00126 * 17 15 13 21 21 C 1.53043 * 109.54016 * 298.51304 * 12 11 10 22 22 C 1.46930 * 120.62945 * 4.44711 * 9 7 6 23 23 C 1.36092 * 107.09826 * 0.26135 * 6 5 4 24 24 O 1.34051 * 125.38038 * 269.98153 * 4 3 2 25 25 H 1.08993 * 109.47293 * 59.99977 * 1 2 3 26 26 H 1.09006 * 109.46602 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46856 * 299.99351 * 1 2 3 28 28 H 1.08997 * 109.47288 * 240.00476 * 2 1 3 29 29 H 1.08998 * 109.47971 * 119.99931 * 2 1 3 30 30 H 1.09007 * 109.47132 * 60.00346 * 3 2 1 31 31 H 1.08998 * 109.47441 * 300.00352 * 3 2 1 32 32 H 1.08997 * 109.58317 * 246.20271 * 10 9 7 33 33 H 1.09000 * 109.58678 * 6.62764 * 10 9 7 34 34 H 1.09002 * 109.63410 * 294.86698 * 11 10 9 35 35 H 1.08997 * 109.43543 * 174.72247 * 11 10 9 36 36 H 1.09000 * 109.46465 * 58.53364 * 12 11 10 37 37 H 0.97002 * 120.00297 * 179.97438 * 16 15 13 38 38 H 1.09004 * 109.49196 * 301.41085 * 21 12 11 39 39 H 1.08998 * 109.52577 * 181.33457 * 21 12 11 40 40 H 1.08996 * 109.58310 * 353.37699 * 22 9 7 41 41 H 1.09004 * 109.58143 * 113.65352 * 22 9 7 42 42 H 1.08001 * 126.52097 * 179.74121 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.2988 1.4428 -1.0603 6 6 5.6009 1.4434 -0.6654 7 6 6.7832 1.4444 -1.5459 8 8 7.8963 1.5572 -1.0692 9 7 6.6302 1.3258 -2.8797 10 6 7.8013 1.2336 -3.7622 11 6 7.6564 -0.0212 -4.6366 12 6 6.3165 0.0299 -5.3741 13 6 6.1857 -1.1809 -6.2617 14 1 5.3688 -1.8721 -6.1153 15 6 7.1089 -1.4065 -7.2606 16 7 8.1034 -0.5647 -7.4391 17 14 6.9472 -2.9078 -8.3604 18 1 5.7522 -3.6910 -7.9560 19 1 6.8002 -2.4732 -9.7727 20 1 8.1609 -3.7528 -8.2262 21 6 5.1727 0.0428 -4.3574 22 6 5.2893 1.2926 -3.4794 23 6 5.6062 1.4376 0.6955 24 8 4.3235 1.4429 1.0920 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 7.8524 2.1195 -4.3952 33 1 8.7072 1.1589 -3.1607 34 1 7.6922 -0.9114 -4.0085 35 1 8.4697 -0.0539 -5.3615 36 1 6.2712 0.9329 -5.9829 37 1 8.7531 -0.7235 -8.1416 38 1 5.2319 -0.8481 -3.7320 39 1 4.2180 0.0553 -4.8832 40 1 4.5374 1.2570 -2.6911 41 1 5.1389 2.1845 -4.0877 42 1 6.4767 1.4325 1.3348 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000544822276.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:42 Heat of formation + Delta-G solvation = -39.797447 kcal Electronic energy + Delta-G solvation = -23696.098194 eV Core-core repulsion = 20255.790576 eV Total energy + Delta-G solvation = -3440.307618 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.53752 -40.99550 -38.45179 -36.46988 -35.87842 -35.22844 -32.91946 -31.99783 -31.44596 -28.37399 -27.89602 -25.78065 -24.39011 -23.73168 -23.14838 -22.19377 -21.36634 -20.22691 -18.66466 -18.44272 -17.86652 -17.62968 -16.95369 -16.53117 -16.13747 -15.94568 -15.71748 -15.17447 -14.92415 -14.71733 -14.51642 -14.27051 -14.12683 -13.96568 -13.58502 -13.07253 -12.97690 -12.85305 -12.73327 -12.47459 -12.44594 -12.23734 -12.06681 -12.00506 -11.68792 -11.57830 -11.47852 -11.37224 -10.86620 -10.50020 -10.31547 -10.11848 -9.57162 -8.08724 -6.23353 0.05244 0.89660 1.39561 1.41683 1.52678 1.54396 1.94560 2.18040 2.43011 2.77246 3.17244 3.50863 3.76134 4.06969 4.10947 4.12644 4.28666 4.33831 4.40125 4.45113 4.50656 4.53478 4.59811 4.70777 4.76265 4.78384 4.85914 4.95696 4.96698 5.14183 5.19801 5.26976 5.31608 5.39381 5.44344 5.49448 5.57428 5.71386 5.94980 6.08886 6.32191 6.37046 6.53323 6.87309 7.00329 7.44782 8.95111 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.016789 B = 0.004195 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.310804 B = 6672.839465 C = 8012.569830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.023 4.023 4 C 0.211 3.789 5 N -0.479 5.479 6 C -0.095 4.095 7 C 0.588 3.412 8 O -0.580 6.580 9 N -0.586 5.586 10 C 0.117 3.883 11 C -0.109 4.109 12 C 0.043 3.957 13 C -0.532 4.532 14 H 0.051 0.949 15 C 0.013 3.987 16 N -0.916 5.916 17 Si 0.954 3.046 18 H -0.268 1.268 19 H -0.279 1.279 20 H -0.282 1.282 21 C -0.107 4.107 22 C 0.068 3.932 23 C 0.034 3.966 24 O -0.188 6.188 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.124 0.876 31 H 0.119 0.881 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.022 0.978 35 H 0.077 0.923 36 H 0.001 0.999 37 H 0.261 0.739 38 H 0.038 0.962 39 H 0.067 0.933 40 H 0.164 0.836 41 H 0.056 0.944 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.277 4.766 18.107 23.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.061 4.061 4 C 0.002 3.998 5 N -0.209 5.209 6 C -0.213 4.213 7 C 0.377 3.623 8 O -0.462 6.462 9 N -0.315 5.315 10 C -0.005 4.005 11 C -0.147 4.147 12 C 0.025 3.975 13 C -0.570 4.570 14 H 0.070 0.930 15 C -0.186 4.186 16 N -0.556 5.556 17 Si 0.780 3.220 18 H -0.192 1.192 19 H -0.205 1.205 20 H -0.208 1.208 21 C -0.145 4.145 22 C -0.054 4.054 23 C -0.041 4.041 24 O -0.074 6.074 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.143 0.857 31 H 0.137 0.863 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.041 0.959 35 H 0.095 0.905 36 H 0.019 0.981 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.179 0.821 41 H 0.074 0.926 42 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -13.798 4.857 17.605 22.889 hybrid contribution 1.012 -0.854 -0.644 1.473 sum -12.785 4.003 16.961 21.614 Atomic orbital electron populations 1.21727 0.93135 1.02597 1.03043 1.21528 0.97727 0.94228 1.02524 1.20554 0.77913 1.00206 1.07444 1.27318 0.97580 0.97084 0.77812 1.70173 1.00865 1.20260 1.29565 1.21573 0.91549 1.14392 0.93806 1.17246 0.86810 0.76450 0.81784 1.90735 1.25981 1.53930 1.75575 1.48109 1.09125 1.68953 1.05336 1.21771 0.87841 0.99031 0.91849 1.21834 1.02462 0.93710 0.96743 1.18651 0.91305 0.95362 0.92229 1.21590 1.10687 1.09440 1.15330 0.93036 1.25737 0.95035 0.99153 0.98639 1.69987 1.14830 1.37735 1.33042 0.85569 0.77999 0.79756 0.78714 1.19224 1.20460 1.20830 1.21778 0.99392 0.96463 0.96910 1.23134 0.84319 0.97459 1.00478 1.25679 0.85654 0.98070 0.94652 1.84429 1.16314 1.69075 1.37585 0.91895 0.92295 0.90968 0.92697 0.91403 0.85750 0.86308 0.91884 0.90668 0.95878 0.90499 0.98116 0.92979 0.94291 0.91452 0.82062 0.92579 0.72664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 71.98 0.71 -0.55 16 2 C -0.12 -1.46 5.92 30.59 0.18 -1.28 16 3 C -0.02 -0.27 5.84 29.85 0.17 -0.09 16 4 C 0.21 4.23 7.56 88.39 0.67 4.90 16 5 N -0.48 -13.09 7.67 -293.05 -2.25 -15.34 16 6 C -0.10 -2.88 6.75 40.41 0.27 -2.61 16 7 C 0.59 22.47 7.69 86.66 0.67 23.14 16 8 O -0.58 -24.33 16.33 -4.07 -0.07 -24.40 16 9 N -0.59 -23.63 2.97 -821.95 -2.44 -26.07 16 10 C 0.12 5.13 6.45 86.51 0.56 5.69 16 11 C -0.11 -5.47 5.17 30.82 0.16 -5.31 16 12 C 0.04 2.21 2.06 -11.51 -0.02 2.19 16 13 C -0.53 -29.84 8.56 25.60 0.22 -29.62 16 14 H 0.05 2.85 7.74 -2.91 -0.02 2.82 16 15 C 0.01 0.72 5.30 84.65 0.45 1.17 16 16 N -0.92 -53.29 11.31 21.45 0.24 -53.05 16 17 Si 0.95 44.10 29.54 68.60 2.03 46.13 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 C -0.11 -4.59 5.30 30.67 0.16 -4.43 16 22 C 0.07 2.54 6.32 86.36 0.55 3.09 16 23 C 0.03 0.75 11.95 67.32 0.80 1.55 16 24 O -0.19 -3.68 10.73 0.36 0.00 -3.68 16 25 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 27 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.07 3.27 7.03 -2.39 -0.02 3.25 16 34 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 4.27 6.03 -2.39 -0.01 4.26 16 36 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 37 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 38 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 39 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 40 H 0.16 5.45 3.62 -58.78 -0.21 5.24 16 41 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 42 H 0.26 4.04 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -69.31 341.26 3.88 -65.43 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.81 Total: 13.13 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 5.55 Total: -2.17 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -4.44 Total: -94.45 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.06 Total: -28.08 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -69.31 3.88 -65.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544822276.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.637 kcal (2) G-P(sol) polarization free energy of solvation -69.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds