Wall clock time and date at job start Tue Mar 31 2020 07:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00283 * 2 1 4 4 C 1.52997 * 109.47030 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47285 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47112 * 59.99616 * 5 4 3 7 7 C 1.53003 * 109.46695 * 300.00270 * 5 4 3 8 8 C 1.50697 * 109.47572 * 179.97438 * 5 4 3 9 9 O 1.21277 * 119.99942 * 359.97438 * 8 5 4 10 10 N 1.34770 * 120.00092 * 179.97438 * 8 5 4 11 11 C 1.39471 * 119.99929 * 185.07712 * 10 8 5 12 12 C 1.38604 * 119.57906 * 185.36612 * 11 10 8 13 13 C 1.40811 * 118.79349 * 179.70133 * 12 11 10 14 14 C 1.41543 * 120.99355 * 180.25581 * 13 12 11 15 15 H 1.07997 * 120.00021 * 153.75383 * 14 13 12 16 16 C 1.40031 * 119.99988 * 333.75002 * 14 13 12 17 17 N 1.30746 * 120.00005 * 350.16377 * 16 14 13 18 18 Si 1.86805 * 119.99957 * 170.15906 * 16 14 13 19 19 H 1.48507 * 109.47017 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.46792 * 120.00212 * 18 16 14 21 21 H 1.48502 * 109.47073 * 240.00108 * 18 16 14 22 22 C 1.41173 * 118.00903 * 0.27208 * 13 12 11 23 23 C 1.37589 * 119.01332 * 0.02562 * 22 13 12 24 24 N 1.32084 * 121.11198 * 0.02562 * 23 22 13 25 25 H 1.09003 * 109.47516 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47109 * 300.00063 * 1 2 3 27 27 H 1.09002 * 109.47101 * 59.99904 * 1 2 3 28 28 H 1.09002 * 109.47227 * 59.99908 * 3 2 1 29 29 H 1.09004 * 109.46584 * 299.99827 * 3 2 1 30 30 H 1.09002 * 109.47252 * 59.99848 * 4 3 2 31 31 H 1.08996 * 109.47046 * 299.99971 * 4 3 2 32 32 H 1.09002 * 109.47039 * 180.02562 * 6 5 4 33 33 H 1.09004 * 109.47197 * 300.00152 * 6 5 4 34 34 H 1.08996 * 109.46849 * 60.00223 * 6 5 4 35 35 H 1.09002 * 109.46953 * 299.99575 * 7 5 4 36 36 H 1.08995 * 109.47699 * 59.99518 * 7 5 4 37 37 H 1.09002 * 109.46868 * 179.97438 * 7 5 4 38 38 H 0.97005 * 120.00473 * 5.07681 * 10 8 5 39 39 H 1.07996 * 120.60021 * 359.97438 * 12 11 10 40 40 H 0.97001 * 119.99522 * 179.97438 * 17 16 14 41 41 H 1.07998 * 120.49406 * 179.97438 * 22 13 12 42 42 H 1.08004 * 119.44720 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1579 2.5822 -0.0013 6 6 3.7070 3.3419 1.2479 7 6 3.7058 3.3411 -1.2506 8 6 5.6602 2.4632 -0.0013 9 8 6.1817 1.3683 -0.0004 10 7 6.4241 3.5734 -0.0023 11 6 7.8105 3.4658 -0.1092 12 6 8.5956 4.6026 0.0027 13 6 9.9940 4.4740 -0.1015 14 6 10.8401 5.6031 0.0110 15 1 11.8585 5.4831 0.3500 16 6 10.3569 6.8757 -0.3173 17 7 9.1968 7.0024 -0.9069 18 14 11.3697 8.3924 0.0871 19 1 12.6345 7.9812 0.7478 20 1 11.6819 9.1273 -1.1648 21 1 10.5979 9.2741 0.9994 22 6 10.5267 3.1853 -0.3219 23 6 9.6665 2.1165 -0.4257 24 7 8.3598 2.2796 -0.3231 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6887 1.8464 0.8900 29 1 1.6886 1.8463 -0.8901 30 1 3.8567 0.6437 -0.8909 31 1 3.8574 0.6434 0.8891 32 1 4.1501 4.3378 1.2472 33 1 2.6204 3.4280 1.2483 34 1 4.0289 2.8012 2.1379 35 1 4.0270 2.7999 -2.1405 36 1 2.6193 3.4272 -1.2502 37 1 4.1489 4.3370 -1.2508 38 1 6.0097 4.4474 0.0713 39 1 8.1434 5.5687 0.1711 40 1 8.8619 7.8840 -1.1340 41 1 11.5934 3.0407 -0.4086 42 1 10.0665 1.1276 -0.5947 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000545342706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:50 Heat of formation + Delta-G solvation = -58.420819 kcal Electronic energy + Delta-G solvation = -23270.305092 eV Core-core repulsion = 19829.189904 eV Total energy + Delta-G solvation = -3441.115188 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.12368 -38.43971 -37.73324 -35.59414 -34.33683 -33.72018 -30.54515 -29.84846 -28.33028 -27.44937 -26.41201 -25.99889 -24.58395 -22.42910 -21.89982 -20.39208 -18.72244 -17.71716 -17.15777 -16.18678 -16.14739 -15.77280 -15.25168 -14.89760 -14.85318 -14.21203 -14.08026 -13.86698 -13.79989 -13.61820 -12.95285 -12.85904 -12.60925 -12.40611 -12.15531 -11.99598 -11.79928 -11.47080 -11.41831 -11.19891 -11.17186 -10.91959 -10.83034 -10.79705 -10.27097 -10.12143 -9.76534 -9.71665 -9.40595 -9.21402 -7.99047 -7.72250 -7.03637 -6.75259 -4.63742 2.55332 2.77325 3.00876 3.06335 3.18868 3.40460 3.48127 3.81770 3.84716 4.66867 4.70056 4.77868 4.82376 5.02929 5.05197 5.17258 5.24379 5.28871 5.32698 5.44452 5.51315 5.66610 5.70644 5.71651 5.84713 5.94740 5.97659 6.08121 6.25602 6.33874 6.58958 6.65715 6.80127 6.95142 7.01997 7.12473 7.38675 7.47189 7.78591 7.95279 8.22028 8.43008 8.70071 8.74971 8.91035 9.68626 10.08572 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028061 B = 0.003327 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.580724 B = 8414.781656 C = 9161.320606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.059 3.941 4 C -0.093 4.093 5 C -0.079 4.079 6 C -0.145 4.145 7 C -0.144 4.144 8 C 0.510 3.490 9 O -0.480 6.480 10 N -0.656 5.656 11 C 0.335 3.665 12 C -0.239 4.239 13 C 0.141 3.859 14 C -0.454 4.454 15 H 0.082 0.918 16 C 0.075 3.925 17 N -0.796 5.796 18 Si 0.914 3.086 19 H -0.260 1.260 20 H -0.274 1.274 21 H -0.272 1.272 22 C -0.282 4.282 23 C 0.117 3.883 24 N -0.553 5.553 25 H 0.084 0.916 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.406 0.594 39 H 0.133 0.867 40 H 0.280 0.720 41 H 0.102 0.898 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.780 -1.613 1.597 14.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.017 4.017 4 C -0.131 4.131 5 C -0.083 4.083 6 C -0.203 4.203 7 C -0.202 4.202 8 C 0.294 3.706 9 O -0.349 6.349 10 N -0.302 5.302 11 C 0.111 3.889 12 C -0.264 4.264 13 C 0.133 3.867 14 C -0.485 4.485 15 H 0.100 0.900 16 C -0.143 4.143 17 N -0.422 5.422 18 Si 0.739 3.261 19 H -0.184 1.184 20 H -0.199 1.199 21 H -0.197 1.197 22 C -0.306 4.306 23 C -0.037 4.037 24 N -0.272 5.272 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.242 0.758 39 H 0.150 0.850 40 H 0.091 0.909 41 H 0.120 0.880 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.061 -3.177 1.410 15.457 hybrid contribution 0.560 2.290 0.135 2.361 sum -14.501 -0.887 1.545 14.610 Atomic orbital electron populations 1.22723 0.81332 1.02624 0.99801 1.87897 1.19398 1.28329 1.95383 1.22736 0.94351 0.84414 1.00224 1.21259 0.91840 0.95099 1.04924 1.20734 0.92798 0.97031 0.97687 1.21957 1.01664 1.00222 0.96436 1.21941 1.01477 1.00349 0.96405 1.20373 0.88118 0.84814 0.77316 1.90772 1.73942 1.25798 1.44433 1.43435 1.05080 1.09428 1.72250 1.18228 0.82571 0.90996 0.97128 1.21672 0.94403 0.96950 1.13422 1.17600 0.91531 0.91928 0.85670 1.19614 0.99023 0.90559 1.39322 0.90034 1.25950 0.95110 1.00935 0.92303 1.69753 1.17864 1.25640 1.28944 0.86160 0.80636 0.80315 0.79030 1.18359 1.19890 1.19703 1.21930 0.99065 0.94585 1.15014 1.21761 0.88249 0.97283 0.96415 1.67186 1.13205 1.23586 1.23259 0.89750 0.94220 0.94197 0.93042 0.93017 0.90228 0.90293 0.91790 0.91510 0.91770 0.91759 0.91585 0.91694 0.75844 0.84965 0.90907 0.87966 0.85886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.75 10.70 -35.23 -0.38 -5.13 16 3 C 0.06 0.63 5.23 37.16 0.19 0.83 16 4 C -0.09 -1.26 3.93 -26.73 -0.11 -1.36 16 5 C -0.08 -1.04 0.65 -155.66 -0.10 -1.14 16 6 C -0.15 -1.56 8.01 37.16 0.30 -1.26 16 7 C -0.14 -1.63 8.02 37.16 0.30 -1.33 16 8 C 0.51 9.59 6.43 -10.99 -0.07 9.52 16 9 O -0.48 -11.14 14.28 5.56 0.08 -11.06 16 10 N -0.66 -12.84 5.17 -11.49 -0.06 -12.90 16 11 C 0.34 8.16 7.40 -154.70 -1.15 7.02 16 12 C -0.24 -6.06 8.61 -38.47 -0.33 -6.39 16 13 C 0.14 3.71 5.60 -106.55 -0.60 3.12 16 14 C -0.45 -11.64 9.14 -37.65 -0.34 -11.98 16 15 H 0.08 2.01 7.87 -52.49 -0.41 1.60 16 16 C 0.07 1.79 5.31 -17.34 -0.09 1.70 16 17 N -0.80 -19.40 10.70 55.55 0.59 -18.81 16 18 Si 0.91 17.88 29.57 -169.99 -5.03 12.85 16 19 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 20 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 21 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 22 C -0.28 -6.97 9.90 -38.71 -0.38 -7.35 16 23 C 0.12 2.85 11.15 -17.68 -0.20 2.65 16 24 N -0.55 -14.27 7.89 -12.52 -0.10 -14.37 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.28 8.14 -51.92 -0.42 -0.15 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.48 6.43 -51.93 -0.33 0.14 16 29 H 0.05 0.49 6.43 -51.93 -0.33 0.15 16 30 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 31 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 32 H 0.06 0.64 7.46 -51.93 -0.39 0.26 16 33 H 0.07 0.56 6.43 -51.93 -0.33 0.22 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.58 6.43 -51.93 -0.33 0.24 16 37 H 0.06 0.71 7.69 -51.93 -0.40 0.31 16 38 H 0.41 6.62 7.56 -40.82 -0.31 6.31 16 39 H 0.13 3.32 6.11 -52.49 -0.32 3.00 16 40 H 0.28 6.15 8.29 -40.82 -0.34 5.82 16 41 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 42 H 0.12 2.62 8.06 -52.48 -0.42 2.19 16 LS Contribution 343.74 15.07 5.18 5.18 Total: -1.00 -31.69 343.74 -7.27 -38.96 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -6.10 Total: 9.87 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -1.46 Total: -4.61 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 0.44 Total: -46.07 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.30 Total: -16.19 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.69 -7.27 -38.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545342706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.458 kcal (2) G-P(sol) polarization free energy of solvation -31.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds