Wall clock time and date at job start Tue Mar 31 2020 07:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00283 * 2 1 4 4 C 1.52997 * 109.47030 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47285 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47112 * 59.99616 * 5 4 3 7 7 C 1.53003 * 109.46695 * 300.00270 * 5 4 3 8 8 C 1.50697 * 109.47572 * 179.97438 * 5 4 3 9 9 O 1.21277 * 119.99942 * 359.97438 * 8 5 4 10 10 N 1.34770 * 120.00092 * 179.97438 * 8 5 4 11 11 C 1.39471 * 119.99929 * 185.07712 * 10 8 5 12 12 C 1.38604 * 119.57906 * 185.36612 * 11 10 8 13 13 C 1.40811 * 118.79349 * 179.70133 * 12 11 10 14 14 C 1.41543 * 120.99355 * 180.25581 * 13 12 11 15 15 H 1.07997 * 120.00021 * 153.75383 * 14 13 12 16 16 C 1.40031 * 119.99988 * 333.75002 * 14 13 12 17 17 N 1.30746 * 120.00005 * 350.16377 * 16 14 13 18 18 Si 1.86805 * 119.99957 * 170.15906 * 16 14 13 19 19 H 1.48507 * 109.47017 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.46792 * 120.00212 * 18 16 14 21 21 H 1.48502 * 109.47073 * 240.00108 * 18 16 14 22 22 C 1.41173 * 118.00903 * 0.27208 * 13 12 11 23 23 C 1.37589 * 119.01332 * 0.02562 * 22 13 12 24 24 N 1.32084 * 121.11198 * 0.02562 * 23 22 13 25 25 H 1.09003 * 109.47516 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47109 * 300.00063 * 1 2 3 27 27 H 1.09002 * 109.47101 * 59.99904 * 1 2 3 28 28 H 1.09002 * 109.47227 * 59.99908 * 3 2 1 29 29 H 1.09004 * 109.46584 * 299.99827 * 3 2 1 30 30 H 1.09002 * 109.47252 * 59.99848 * 4 3 2 31 31 H 1.08996 * 109.47046 * 299.99971 * 4 3 2 32 32 H 1.09002 * 109.47039 * 180.02562 * 6 5 4 33 33 H 1.09004 * 109.47197 * 300.00152 * 6 5 4 34 34 H 1.08996 * 109.46849 * 60.00223 * 6 5 4 35 35 H 1.09002 * 109.46953 * 299.99575 * 7 5 4 36 36 H 1.08995 * 109.47699 * 59.99518 * 7 5 4 37 37 H 1.09002 * 109.46868 * 179.97438 * 7 5 4 38 38 H 0.97005 * 120.00473 * 5.07681 * 10 8 5 39 39 H 1.07996 * 120.60021 * 359.97438 * 12 11 10 40 40 H 0.97001 * 119.99522 * 179.97438 * 17 16 14 41 41 H 1.07998 * 120.49406 * 179.97438 * 22 13 12 42 42 H 1.08004 * 119.44720 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1579 2.5822 -0.0013 6 6 3.7070 3.3419 1.2479 7 6 3.7058 3.3411 -1.2506 8 6 5.6602 2.4632 -0.0013 9 8 6.1817 1.3683 -0.0004 10 7 6.4241 3.5734 -0.0023 11 6 7.8105 3.4658 -0.1092 12 6 8.5956 4.6026 0.0027 13 6 9.9940 4.4740 -0.1015 14 6 10.8401 5.6031 0.0110 15 1 11.8585 5.4831 0.3500 16 6 10.3569 6.8757 -0.3173 17 7 9.1968 7.0024 -0.9069 18 14 11.3697 8.3924 0.0871 19 1 12.6345 7.9812 0.7478 20 1 11.6819 9.1273 -1.1648 21 1 10.5979 9.2741 0.9994 22 6 10.5267 3.1853 -0.3219 23 6 9.6665 2.1165 -0.4257 24 7 8.3598 2.2796 -0.3231 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.6887 1.8464 0.8900 29 1 1.6886 1.8463 -0.8901 30 1 3.8567 0.6437 -0.8909 31 1 3.8574 0.6434 0.8891 32 1 4.1501 4.3378 1.2472 33 1 2.6204 3.4280 1.2483 34 1 4.0289 2.8012 2.1379 35 1 4.0270 2.7999 -2.1405 36 1 2.6193 3.4272 -1.2502 37 1 4.1489 4.3370 -1.2508 38 1 6.0097 4.4474 0.0713 39 1 8.1434 5.5687 0.1711 40 1 8.8619 7.8840 -1.1340 41 1 11.5934 3.0407 -0.4086 42 1 10.0665 1.1276 -0.5947 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545342706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:49 Heat of formation + Delta-G solvation = -78.330036 kcal Electronic energy + Delta-G solvation = -23271.168421 eV Core-core repulsion = 19829.189904 eV Total energy + Delta-G solvation = -3441.978517 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.61855 -39.99327 -38.86293 -36.79379 -36.13006 -35.48647 -32.45342 -31.05085 -29.87247 -28.33097 -27.92005 -27.13016 -25.68896 -23.94947 -23.72323 -22.00197 -20.12344 -19.49035 -18.38767 -17.48710 -17.29642 -16.99102 -16.87889 -16.24223 -16.07572 -15.95883 -15.55543 -15.30833 -14.92560 -14.72237 -14.54399 -14.35736 -14.20474 -13.55962 -13.42442 -13.15701 -12.87648 -12.85739 -12.71947 -12.57523 -12.34346 -12.10984 -12.08161 -11.86629 -11.84600 -11.77480 -11.49364 -11.19124 -10.80182 -10.52149 -9.93879 -9.60095 -8.88254 -8.58401 -6.58534 0.72768 0.98881 1.41805 1.53395 1.56316 1.87572 2.08363 2.20952 2.82037 2.86752 3.45996 3.71897 3.81729 3.82447 4.06464 4.22945 4.27091 4.30948 4.45766 4.58271 4.59026 4.70277 4.71483 4.79898 4.83870 4.86057 4.88465 4.91557 4.96223 4.96820 5.07790 5.12384 5.24245 5.31940 5.33059 5.47133 5.64257 5.92065 6.14066 6.28842 6.47676 6.59679 6.78714 6.83618 7.30789 7.82550 8.29182 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028061 B = 0.003327 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.580724 B = 8414.781656 C = 9161.320606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.424 6.424 3 C 0.065 3.935 4 C -0.090 4.090 5 C -0.065 4.065 6 C -0.144 4.144 7 C -0.143 4.143 8 C 0.504 3.496 9 O -0.530 6.530 10 N -0.648 5.648 11 C 0.331 3.669 12 C -0.255 4.255 13 C 0.112 3.888 14 C -0.482 4.482 15 H 0.082 0.918 16 C 0.036 3.964 17 N -0.816 5.816 18 Si 0.990 3.010 19 H -0.260 1.260 20 H -0.266 1.266 21 H -0.261 1.261 22 C -0.296 4.296 23 C 0.111 3.889 24 N -0.581 5.581 25 H 0.092 0.908 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.102 0.898 37 H 0.070 0.930 38 H 0.421 0.579 39 H 0.131 0.869 40 H 0.292 0.708 41 H 0.116 0.884 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.601 0.395 1.819 16.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.344 6.344 3 C -0.011 4.011 4 C -0.129 4.129 5 C -0.068 4.068 6 C -0.201 4.201 7 C -0.200 4.200 8 C 0.291 3.709 9 O -0.403 6.403 10 N -0.295 5.295 11 C 0.106 3.894 12 C -0.281 4.281 13 C 0.103 3.897 14 C -0.513 4.513 15 H 0.100 0.900 16 C -0.180 4.180 17 N -0.442 5.442 18 Si 0.811 3.189 19 H -0.184 1.184 20 H -0.191 1.191 21 H -0.185 1.185 22 C -0.320 4.320 23 C -0.043 4.043 24 N -0.301 5.301 25 H 0.110 0.890 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.120 0.880 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.259 0.741 39 H 0.149 0.851 40 H 0.103 0.897 41 H 0.134 0.866 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.927 -1.158 1.629 17.045 hybrid contribution 1.095 1.613 0.037 1.950 sum -15.832 0.455 1.666 15.926 Atomic orbital electron populations 1.22935 0.79258 1.03724 1.01149 1.87851 1.21726 1.29177 1.95674 1.22704 0.91767 0.84478 1.02141 1.21188 0.94487 0.94633 1.02547 1.20697 0.88007 0.97798 1.00327 1.22008 1.03983 0.99888 0.94211 1.21985 1.03849 0.99844 0.94296 1.21510 0.90499 0.83622 0.75296 1.90740 1.75470 1.27577 1.46494 1.43471 1.03476 1.10786 1.71790 1.18502 0.84551 0.90397 0.95993 1.21661 0.94440 0.97123 1.14860 1.18044 0.92443 0.92953 0.86236 1.19885 0.99273 0.91636 1.40515 0.89966 1.26818 0.96289 1.03422 0.91452 1.69780 1.18911 1.27207 1.28297 0.85028 0.78829 0.76047 0.79020 1.18361 1.19095 1.18529 1.22111 0.99889 0.94400 1.15613 1.22195 0.88084 0.98400 0.95626 1.67311 1.13920 1.24363 1.24473 0.88982 0.92759 0.92850 0.90842 0.91073 0.92868 0.92581 0.90852 0.87951 0.92864 0.93376 0.87906 0.91063 0.74083 0.85147 0.89721 0.86602 0.83467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.42 -9.68 10.70 -148.98 -1.59 -11.27 16 3 C 0.06 1.24 5.23 71.98 0.38 1.62 16 4 C -0.09 -2.42 3.93 30.59 0.12 -2.30 16 5 C -0.06 -1.65 0.65 -52.93 -0.03 -1.68 16 6 C -0.14 -2.72 8.01 71.98 0.58 -2.15 16 7 C -0.14 -2.89 8.02 71.98 0.58 -2.31 16 8 C 0.50 19.27 6.43 87.66 0.56 19.83 16 9 O -0.53 -25.63 14.28 -3.02 -0.04 -25.67 16 10 N -0.65 -25.67 5.17 -308.67 -1.60 -27.26 16 11 C 0.33 16.55 7.40 132.75 0.98 17.53 16 12 C -0.26 -13.26 8.61 22.99 0.20 -13.06 16 13 C 0.11 6.02 5.60 -21.11 -0.12 5.90 16 14 C -0.48 -25.05 9.14 23.52 0.21 -24.83 16 15 H 0.08 4.11 7.87 -2.91 -0.02 4.08 16 16 C 0.04 1.73 5.31 85.29 0.45 2.18 16 17 N -0.82 -39.47 10.70 21.84 0.23 -39.24 16 18 Si 0.99 35.75 29.57 68.60 2.03 37.77 16 19 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 20 H -0.27 -9.26 7.11 99.48 0.71 -8.55 16 21 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 22 C -0.30 -15.01 9.90 22.84 0.23 -14.79 16 23 C 0.11 5.51 11.15 84.50 0.94 6.45 16 24 N -0.58 -30.86 7.89 -193.52 -1.53 -32.39 16 25 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 1.08 6.43 -2.39 -0.02 1.06 16 29 H 0.07 1.08 6.43 -2.38 -0.02 1.06 16 30 H 0.05 1.67 8.10 -2.39 -0.02 1.65 16 31 H 0.06 1.72 8.10 -2.39 -0.02 1.70 16 32 H 0.07 1.27 7.46 -2.39 -0.02 1.25 16 33 H 0.10 1.25 6.43 -2.39 -0.02 1.24 16 34 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.10 1.36 6.43 -2.39 -0.02 1.34 16 37 H 0.07 1.37 7.69 -2.39 -0.02 1.35 16 38 H 0.42 13.56 7.56 -92.70 -0.70 12.86 16 39 H 0.13 6.67 6.11 -2.91 -0.02 6.65 16 40 H 0.29 12.51 8.29 -92.71 -0.77 11.74 16 41 H 0.12 5.35 8.06 -2.91 -0.02 5.33 16 42 H 0.15 6.36 8.06 -2.91 -0.02 6.33 16 Total: -1.00 -71.43 343.74 4.16 -67.27 By element: Atomic # 1 Polarization: 36.45 SS G_CDS: 0.33 Total: 36.78 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 6.33 Total: -5.99 kcal Atomic # 7 Polarization: -96.00 SS G_CDS: -2.89 Total: -98.88 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -1.64 Total: -36.94 kcal Atomic # 14 Polarization: 35.75 SS G_CDS: 2.03 Total: 37.77 kcal Total: -71.43 4.16 -67.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545342706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.063 kcal (2) G-P(sol) polarization free energy of solvation -71.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds