Wall clock time and date at job start Tue Mar 31 2020 06:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47187 * 2 1 4 4 C 1.50701 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.35316 * 126.66551 * 90.33464 * 4 3 2 6 6 C 1.42273 * 103.91986 * 180.10337 * 5 4 3 7 7 C 1.48333 * 126.93676 * 179.85134 * 6 5 4 8 8 O 1.21498 * 119.99613 * 6.97994 * 7 6 5 9 9 N 1.34773 * 119.99909 * 186.98037 * 7 6 5 10 10 C 1.46925 * 120.63129 * 6.26882 * 9 7 6 11 11 C 1.53628 * 108.53785 * 126.37167 * 10 9 7 12 12 C 1.53032 * 109.24480 * 54.85931 * 11 10 9 13 13 C 1.50699 * 109.45230 * 178.49218 * 12 11 10 14 14 H 1.08006 * 119.99767 * 120.06041 * 13 12 11 15 15 C 1.37868 * 120.00194 * 300.06249 * 13 12 11 16 16 N 1.31513 * 120.00144 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00068 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.46987 * 89.99902 * 17 15 13 19 19 H 1.48499 * 109.47327 * 209.99811 * 17 15 13 20 20 H 1.48491 * 109.47089 * 330.00192 * 17 15 13 21 21 C 1.53042 * 109.53843 * 298.51004 * 12 11 10 22 22 C 1.46923 * 120.62736 * 186.55352 * 9 7 6 23 23 N 1.30983 * 106.12395 * 359.59441 * 6 5 4 24 24 O 1.20905 * 111.44136 * 0.25985 * 23 6 5 25 25 H 1.09004 * 109.47096 * 59.99513 * 1 2 3 26 26 H 1.09000 * 109.47299 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47108 * 299.99686 * 1 2 3 28 28 H 1.09003 * 109.46753 * 240.00659 * 2 1 3 29 29 H 1.08993 * 109.47497 * 120.00739 * 2 1 3 30 30 H 1.08999 * 109.46840 * 60.00150 * 3 2 1 31 31 H 1.08994 * 109.47649 * 300.00203 * 3 2 1 32 32 H 1.08000 * 128.03925 * 359.95964 * 5 4 3 33 33 H 1.09000 * 109.59091 * 246.20503 * 10 9 7 34 34 H 1.08996 * 109.58671 * 6.63287 * 10 9 7 35 35 H 1.08996 * 109.63597 * 294.86461 * 11 10 9 36 36 H 1.09009 * 109.42771 * 174.72678 * 11 10 9 37 37 H 1.09001 * 109.45913 * 58.52714 * 12 11 10 38 38 H 0.97007 * 120.00071 * 180.02562 * 16 15 13 39 39 H 1.09003 * 109.49234 * 301.41242 * 21 12 11 40 40 H 1.08998 * 109.52658 * 181.32908 * 21 12 11 41 41 H 1.08993 * 109.59304 * 353.37521 * 22 9 7 42 42 H 1.09008 * 109.58349 * 113.65596 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3546 1.4490 -1.0864 6 6 5.6669 1.4432 -0.5369 7 6 6.9471 1.4435 -1.2862 8 8 6.9440 1.5770 -2.4938 9 7 8.1135 1.2957 -0.6274 10 6 8.1282 0.9967 0.8110 11 6 8.9860 -0.2569 1.0406 12 6 10.3722 -0.0383 0.4303 13 6 11.2297 -1.2510 0.6852 14 1 11.6381 -1.8078 -0.1452 15 6 11.4928 -1.6498 1.9785 16 7 12.2407 -2.7085 2.2009 17 14 10.7869 -0.6864 3.4149 18 1 9.4582 -1.2415 3.7779 19 1 11.7024 -0.7920 4.5794 20 1 10.6390 0.7399 3.0293 21 6 10.2382 0.1835 -1.0780 22 6 9.3946 1.4366 -1.3328 23 7 5.5165 1.4431 0.7643 24 8 4.3478 1.4427 1.0741 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 4.0693 1.4546 -2.1280 33 1 8.5548 1.8394 1.3551 34 1 7.1108 0.8134 1.1565 35 1 8.5118 -1.1168 0.5677 36 1 9.0841 -0.4380 2.1111 37 1 10.8358 0.8365 0.8862 38 1 12.4255 -2.9893 3.1109 39 1 9.7522 -0.6806 -1.5310 40 1 11.2275 0.3157 -1.5161 41 1 9.2132 1.5437 -2.4022 42 1 9.9212 2.3159 -0.9618 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562531962.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:00 Heat of formation + Delta-G solvation = 25.167994 kcal Electronic energy + Delta-G solvation = -23608.970654 eV Core-core repulsion = 20171.480148 eV Total energy + Delta-G solvation = -3437.490505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.19258 -39.83517 -37.14933 -36.05414 -34.21460 -33.49227 -32.04664 -31.37862 -30.50967 -27.38849 -26.82747 -24.78024 -23.11776 -22.68193 -22.39324 -21.76821 -19.98236 -18.64875 -17.87566 -17.40791 -16.95428 -16.62679 -15.78180 -15.54006 -15.01281 -14.66769 -14.50284 -13.93222 -13.68408 -13.61218 -13.48008 -13.13726 -12.86390 -12.72699 -12.55665 -12.18561 -12.06647 -11.89342 -11.76129 -11.35559 -11.10182 -10.99104 -10.75781 -10.50897 -10.26951 -10.18390 -9.89268 -9.74365 -9.57371 -9.31447 -9.07691 -8.56706 -8.27974 -6.10076 -4.09459 1.04223 1.55604 2.72788 3.02222 3.22419 3.23579 3.34204 3.36765 3.90501 4.20835 4.37347 4.54556 4.55101 4.74791 4.84631 4.95246 5.14365 5.20334 5.22230 5.32785 5.33995 5.49680 5.58822 5.62178 5.68646 5.73187 5.75774 5.79247 5.85982 5.89783 6.03803 6.25493 6.30763 6.58073 6.63316 6.73237 6.86358 7.15995 7.46142 7.53584 7.72469 7.91244 8.20195 8.49148 8.93949 9.52020 11.03210 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019491 B = 0.004029 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.182876 B = 6947.477780 C = 7803.740069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.038 4.038 4 C -0.033 4.033 5 C -0.181 4.181 6 C -0.015 4.015 7 C 0.592 3.408 8 O -0.536 6.536 9 N -0.583 5.583 10 C 0.082 3.918 11 C -0.132 4.132 12 C 0.013 3.987 13 C -0.513 4.513 14 H 0.074 0.926 15 C 0.069 3.931 16 N -0.901 5.901 17 Si 0.884 3.116 18 H -0.278 1.278 19 H -0.296 1.296 20 H -0.265 1.265 21 C -0.113 4.113 22 C 0.108 3.892 23 N -0.325 5.325 24 O 0.114 5.886 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.179 0.821 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.029 0.971 38 H 0.264 0.736 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.086 9.512 -3.443 24.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.076 4.076 4 C -0.096 4.096 5 C -0.203 4.203 6 C -0.174 4.174 7 C 0.377 3.623 8 O -0.413 6.413 9 N -0.315 5.315 10 C -0.041 4.041 11 C -0.170 4.170 12 C -0.006 4.006 13 C -0.551 4.551 14 H 0.092 0.908 15 C -0.133 4.133 16 N -0.539 5.539 17 Si 0.715 3.285 18 H -0.205 1.205 19 H -0.224 1.224 20 H -0.190 1.190 21 C -0.151 4.151 22 C -0.013 4.013 23 N -0.028 5.028 24 O 0.042 5.958 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.117 0.883 32 H 0.197 0.803 33 H 0.084 0.916 34 H 0.123 0.877 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.065 9.470 -2.955 23.284 hybrid contribution -0.528 0.294 0.306 0.677 sum -21.593 9.764 -2.650 23.846 Atomic orbital electron populations 1.21764 0.94836 1.02258 1.02081 1.21581 0.96355 0.94976 1.03382 1.20255 0.83308 0.99087 1.04948 1.24474 0.96123 1.03410 0.85615 1.22394 0.89671 1.06864 1.01402 1.23574 0.96861 1.06944 0.90005 1.16972 0.81563 0.77673 0.86050 1.90749 1.86344 1.51491 1.12726 1.48037 1.05441 1.67160 1.10856 1.22647 1.03257 0.99137 0.79013 1.22441 0.98241 0.95535 1.00807 1.19158 0.91816 0.98066 0.91529 1.21033 1.29929 1.10476 0.93648 0.90785 1.25036 0.94717 0.94696 0.98829 1.69900 1.38175 1.24819 1.20974 0.86887 0.78176 0.81365 0.82089 1.20485 1.22387 1.18968 1.21830 0.98621 0.95458 0.99162 1.21891 0.82407 0.99510 0.97489 1.74184 0.96481 1.16597 1.15563 1.84816 1.11426 1.65862 1.33705 0.92439 0.92227 0.92387 0.91175 0.91139 0.89113 0.88315 0.80348 0.91641 0.87679 0.91797 0.92285 0.95321 0.92643 0.92162 0.91023 0.89554 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 37.16 0.37 -0.32 16 2 C -0.13 -0.73 5.92 -26.73 -0.16 -0.89 16 3 C -0.04 -0.22 5.78 -27.88 -0.16 -0.38 16 4 C -0.03 -0.33 6.73 -35.35 -0.24 -0.57 16 5 C -0.18 -2.16 10.93 -39.07 -0.43 -2.59 16 6 C -0.02 -0.24 6.87 -82.53 -0.57 -0.80 16 7 C 0.59 10.67 7.71 -12.11 -0.09 10.58 16 8 O -0.54 -10.53 16.38 5.37 0.09 -10.44 16 9 N -0.58 -10.68 2.97 -173.43 -0.51 -11.19 16 10 C 0.08 1.52 6.16 -3.48 -0.02 1.50 16 11 C -0.13 -2.87 4.86 -26.39 -0.13 -2.99 16 12 C 0.01 0.31 1.65 -91.73 -0.15 0.15 16 13 C -0.51 -14.28 9.14 -34.44 -0.31 -14.59 16 14 H 0.07 2.23 7.99 -52.48 -0.42 1.82 16 15 C 0.07 1.97 5.45 -17.82 -0.10 1.87 16 16 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 17 Si 0.88 21.73 24.38 -169.99 -4.14 17.59 16 18 H -0.28 -6.65 6.86 56.52 0.39 -6.26 16 19 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 20 H -0.26 -6.17 6.53 56.52 0.37 -5.80 16 21 C -0.11 -2.25 5.30 -26.61 -0.14 -2.39 16 22 C 0.11 1.91 6.44 -3.71 -0.02 1.88 16 23 N -0.32 -4.91 8.65 33.29 0.29 -4.62 16 24 O 0.11 1.42 11.18 17.23 0.19 1.62 16 25 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.18 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.11 1.88 4.19 -57.08 -0.24 1.64 16 35 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.06 1.34 3.24 -51.92 -0.17 1.18 16 37 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 41 H 0.09 1.47 7.00 -51.93 -0.36 1.11 16 42 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 LS Contribution 334.55 15.07 5.04 5.04 Total: -1.00 -32.27 334.55 -6.67 -38.94 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -6.24 Total: -0.62 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -2.15 Total: -9.54 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.55 Total: -42.58 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.28 Total: -8.82 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.14 Total: 17.59 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.27 -6.67 -38.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562531962.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.108 kcal (2) G-P(sol) polarization free energy of solvation -32.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds