Wall clock time and date at job start Tue Mar 31 2020 06:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47187 * 2 1 4 4 C 1.50701 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.35316 * 126.66551 * 90.33464 * 4 3 2 6 6 C 1.42273 * 103.91986 * 180.10337 * 5 4 3 7 7 C 1.48333 * 126.93676 * 179.85134 * 6 5 4 8 8 O 1.21498 * 119.99613 * 6.97994 * 7 6 5 9 9 N 1.34773 * 119.99909 * 186.98037 * 7 6 5 10 10 C 1.46925 * 120.63129 * 6.26882 * 9 7 6 11 11 C 1.53628 * 108.53785 * 126.37167 * 10 9 7 12 12 C 1.53032 * 109.24480 * 54.85931 * 11 10 9 13 13 C 1.50699 * 109.45230 * 178.49218 * 12 11 10 14 14 H 1.08006 * 119.99767 * 120.06041 * 13 12 11 15 15 C 1.37868 * 120.00194 * 300.06249 * 13 12 11 16 16 N 1.31513 * 120.00144 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00068 * 359.97438 * 15 13 12 18 18 H 1.48507 * 109.46987 * 89.99902 * 17 15 13 19 19 H 1.48499 * 109.47327 * 209.99811 * 17 15 13 20 20 H 1.48491 * 109.47089 * 330.00192 * 17 15 13 21 21 C 1.53042 * 109.53843 * 298.51004 * 12 11 10 22 22 C 1.46923 * 120.62736 * 186.55352 * 9 7 6 23 23 N 1.30983 * 106.12395 * 359.59441 * 6 5 4 24 24 O 1.20905 * 111.44136 * 0.25985 * 23 6 5 25 25 H 1.09004 * 109.47096 * 59.99513 * 1 2 3 26 26 H 1.09000 * 109.47299 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47108 * 299.99686 * 1 2 3 28 28 H 1.09003 * 109.46753 * 240.00659 * 2 1 3 29 29 H 1.08993 * 109.47497 * 120.00739 * 2 1 3 30 30 H 1.08999 * 109.46840 * 60.00150 * 3 2 1 31 31 H 1.08994 * 109.47649 * 300.00203 * 3 2 1 32 32 H 1.08000 * 128.03925 * 359.95964 * 5 4 3 33 33 H 1.09000 * 109.59091 * 246.20503 * 10 9 7 34 34 H 1.08996 * 109.58671 * 6.63287 * 10 9 7 35 35 H 1.08996 * 109.63597 * 294.86461 * 11 10 9 36 36 H 1.09009 * 109.42771 * 174.72678 * 11 10 9 37 37 H 1.09001 * 109.45913 * 58.52714 * 12 11 10 38 38 H 0.97007 * 120.00071 * 180.02562 * 16 15 13 39 39 H 1.09003 * 109.49234 * 301.41242 * 21 12 11 40 40 H 1.08998 * 109.52658 * 181.32908 * 21 12 11 41 41 H 1.08993 * 109.59304 * 353.37521 * 22 9 7 42 42 H 1.09008 * 109.58349 * 113.65596 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3546 1.4490 -1.0864 6 6 5.6669 1.4432 -0.5369 7 6 6.9471 1.4435 -1.2862 8 8 6.9440 1.5770 -2.4938 9 7 8.1135 1.2957 -0.6274 10 6 8.1282 0.9967 0.8110 11 6 8.9860 -0.2569 1.0406 12 6 10.3722 -0.0383 0.4303 13 6 11.2297 -1.2510 0.6852 14 1 11.6381 -1.8078 -0.1452 15 6 11.4928 -1.6498 1.9785 16 7 12.2407 -2.7085 2.2009 17 14 10.7869 -0.6864 3.4149 18 1 9.4582 -1.2415 3.7779 19 1 11.7024 -0.7920 4.5794 20 1 10.6390 0.7399 3.0293 21 6 10.2382 0.1835 -1.0780 22 6 9.3946 1.4366 -1.3328 23 7 5.5165 1.4431 0.7643 24 8 4.3478 1.4427 1.0741 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 4.0693 1.4546 -2.1280 33 1 8.5548 1.8394 1.3551 34 1 7.1108 0.8134 1.1565 35 1 8.5118 -1.1168 0.5677 36 1 9.0841 -0.4380 2.1111 37 1 10.8358 0.8365 0.8862 38 1 12.4255 -2.9893 3.1109 39 1 9.7522 -0.6806 -1.5310 40 1 11.2275 0.3157 -1.5161 41 1 9.2132 1.5437 -2.4022 42 1 9.9212 2.3159 -0.9618 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562531962.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:58 Heat of formation + Delta-G solvation = 5.402970 kcal Electronic energy + Delta-G solvation = -23609.827730 eV Core-core repulsion = 20171.480148 eV Total energy + Delta-G solvation = -3438.347581 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -46.21644 -41.27370 -38.73402 -36.61216 -35.60330 -35.01809 -33.49091 -32.71580 -31.99892 -28.60323 -27.94913 -26.21536 -24.47518 -24.15851 -23.53494 -22.53476 -21.47006 -20.03649 -18.95149 -18.86994 -18.47240 -18.05846 -17.14938 -16.65215 -16.33936 -15.99633 -15.59707 -15.23832 -15.01017 -14.85101 -14.58438 -14.40484 -14.33048 -14.14896 -13.93486 -13.57432 -13.17346 -12.90154 -12.54140 -12.45901 -12.36072 -12.17567 -12.15870 -11.85115 -11.61101 -11.58478 -11.53049 -11.43382 -11.09808 -11.06005 -10.69752 -10.42611 -9.80127 -8.32381 -6.36935 -0.03396 0.62338 1.28495 1.33971 1.44063 1.61685 1.93352 2.00646 2.29949 2.73264 3.02714 3.31253 3.74129 3.86091 4.01069 4.04007 4.08601 4.12814 4.14131 4.18686 4.28199 4.33804 4.54181 4.61339 4.66219 4.79420 4.81151 4.85525 4.88779 4.91946 4.93971 4.99350 5.02428 5.27008 5.30641 5.33418 5.45963 5.50196 5.61770 5.65942 6.12061 6.27208 6.69683 6.71709 7.03014 7.28497 8.84576 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019491 B = 0.004029 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.182876 B = 6947.477780 C = 7803.740069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.035 4.035 4 C -0.009 4.009 5 C -0.189 4.189 6 C -0.044 4.044 7 C 0.591 3.409 8 O -0.558 6.558 9 N -0.591 5.591 10 C 0.092 3.908 11 C -0.128 4.128 12 C 0.013 3.987 13 C -0.520 4.520 14 H 0.031 0.969 15 C 0.010 3.990 16 N -0.951 5.951 17 Si 0.946 3.054 18 H -0.266 1.266 19 H -0.298 1.298 20 H -0.239 1.239 21 C -0.106 4.106 22 C 0.115 3.885 23 N -0.345 5.345 24 O 0.121 5.879 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.110 0.890 31 H 0.123 0.877 32 H 0.195 0.805 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.035 0.965 38 H 0.266 0.734 39 H 0.042 0.958 40 H 0.076 0.924 41 H 0.092 0.908 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.116 11.822 -2.788 27.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.073 4.073 4 C -0.073 4.073 5 C -0.212 4.212 6 C -0.200 4.200 7 C 0.378 3.622 8 O -0.436 6.436 9 N -0.322 5.322 10 C -0.031 4.031 11 C -0.167 4.167 12 C -0.006 4.006 13 C -0.558 4.558 14 H 0.050 0.950 15 C -0.187 4.187 16 N -0.591 5.591 17 Si 0.773 3.227 18 H -0.192 1.192 19 H -0.225 1.225 20 H -0.163 1.163 21 C -0.145 4.145 22 C -0.006 4.006 23 N -0.047 5.047 24 O 0.047 5.953 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.129 0.871 31 H 0.141 0.859 32 H 0.212 0.788 33 H 0.097 0.903 34 H 0.135 0.865 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -24.094 11.795 -2.324 26.926 hybrid contribution 0.364 -0.511 0.018 0.628 sum -23.729 11.284 -2.306 26.377 Atomic orbital electron populations 1.21744 0.93601 1.02395 1.02945 1.21569 0.97367 0.94760 1.02591 1.20532 0.80105 0.99480 1.07157 1.25144 0.97449 1.00596 0.84062 1.22639 0.88427 1.07341 1.02753 1.23456 0.96892 1.09091 0.90602 1.17275 0.82189 0.76762 0.85958 1.90726 1.86819 1.52402 1.13659 1.48096 1.05849 1.67473 1.10781 1.22548 1.03345 0.97740 0.79427 1.22291 0.97640 0.96840 0.99888 1.19119 0.91865 0.95770 0.93801 1.21345 1.30221 1.11648 0.92561 0.95020 1.25928 0.95074 0.95682 1.02000 1.70057 1.40240 1.27029 1.21773 0.85873 0.77647 0.81192 0.78015 1.19219 1.22529 1.16255 1.21712 0.99438 0.96337 0.96964 1.21834 0.82084 0.98615 0.98105 1.74071 0.97842 1.17424 1.15407 1.84774 1.10960 1.65105 1.34460 0.91485 0.92533 0.91618 0.91880 0.92165 0.87134 0.85874 0.78806 0.90273 0.86544 0.93313 0.92965 0.94735 0.92534 0.93897 0.90579 0.88920 0.89343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 71.98 0.71 -0.21 16 2 C -0.12 -1.12 5.92 30.60 0.18 -0.94 16 3 C -0.04 -0.28 5.78 29.85 0.17 -0.10 16 4 C -0.01 -0.16 6.73 25.01 0.17 0.01 16 5 C -0.19 -4.09 10.93 22.60 0.25 -3.84 16 6 C -0.04 -1.28 6.87 42.96 0.30 -0.99 16 7 C 0.59 20.61 7.71 86.93 0.67 21.28 16 8 O -0.56 -21.38 16.38 -3.71 -0.06 -21.44 16 9 N -0.59 -20.75 2.97 -820.93 -2.43 -23.19 16 10 C 0.09 3.23 6.16 86.51 0.53 3.76 16 11 C -0.13 -5.45 4.86 30.82 0.15 -5.30 16 12 C 0.01 0.61 1.65 -11.52 -0.02 0.59 16 13 C -0.52 -29.79 9.14 25.60 0.23 -29.56 16 14 H 0.03 2.02 7.99 -2.91 -0.02 1.99 16 15 C 0.01 0.58 5.45 84.65 0.46 1.05 16 16 N -0.95 -60.01 13.96 21.44 0.30 -59.71 16 17 Si 0.95 44.48 24.38 68.60 1.67 46.15 16 18 H -0.27 -11.94 6.86 99.48 0.68 -11.25 16 19 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 20 H -0.24 -10.17 6.53 99.48 0.65 -9.52 16 21 C -0.11 -4.24 5.30 30.67 0.16 -4.08 16 22 C 0.11 3.88 6.44 86.36 0.56 4.43 16 23 N -0.35 -9.75 8.65 -49.51 -0.43 -10.17 16 24 O 0.12 2.72 11.18 71.85 0.80 3.52 16 25 H 0.07 0.30 8.14 -2.38 -0.02 0.28 16 26 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.19 3.45 8.06 -2.91 -0.02 3.42 16 33 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.12 3.93 4.19 -12.56 -0.05 3.88 16 35 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.05 2.28 3.24 -2.38 -0.01 2.27 16 37 H 0.03 1.56 7.20 -2.39 -0.02 1.54 16 38 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 39 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 41 H 0.09 3.04 7.00 -2.39 -0.02 3.03 16 42 H 0.09 2.63 8.14 -2.38 -0.02 2.61 16 Total: -1.00 -71.73 334.55 5.27 -66.45 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: 0.89 Total: 12.27 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: 4.53 Total: -13.89 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -2.56 Total: -93.08 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.74 Total: -17.91 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.67 Total: 46.15 kcal Total: -71.73 5.27 -66.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562531962.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.858 kcal (2) G-P(sol) polarization free energy of solvation -71.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds