Wall clock time and date at job start Tue Mar 31 2020 06:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47302 * 2 1 4 4 N 1.29932 * 125.37793 * 89.99366 * 3 2 1 5 5 C 1.36071 * 108.47572 * 179.97438 * 4 3 2 6 6 C 1.47418 * 126.44712 * 180.02562 * 5 4 3 7 7 O 1.21613 * 120.00192 * 173.40893 * 6 5 4 8 8 N 1.34777 * 120.00263 * 353.40775 * 6 5 4 9 9 C 1.46927 * 120.62707 * 3.96346 * 8 6 5 10 10 C 1.52765 * 109.00514 * 233.58211 * 9 8 6 11 11 C 1.53037 * 109.38474 * 305.58822 * 10 9 8 12 12 C 1.52998 * 109.45054 * 181.25321 * 11 10 9 13 13 C 1.50703 * 109.47105 * 64.93839 * 12 11 10 14 14 H 1.08005 * 119.99780 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00148 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99829 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99860 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.46870 * 90.00245 * 17 15 13 19 19 H 1.48502 * 109.47142 * 210.00065 * 17 15 13 20 20 H 1.48501 * 109.47348 * 330.00298 * 17 15 13 21 21 C 1.53048 * 109.53838 * 61.23963 * 11 10 9 22 22 C 1.46928 * 120.63064 * 184.24129 * 8 6 5 23 23 C 1.36090 * 107.10554 * 0.02562 * 5 4 3 24 24 O 1.34053 * 125.37738 * 269.97709 * 3 2 1 25 25 H 1.08994 * 109.46915 * 300.00427 * 1 2 3 26 26 H 1.08997 * 109.46682 * 60.00012 * 1 2 3 27 27 H 1.08992 * 109.47048 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47556 * 239.99906 * 2 1 3 29 29 H 1.08996 * 109.47404 * 119.99802 * 2 1 3 30 30 H 1.08996 * 109.58631 * 353.41671 * 9 8 6 31 31 H 1.09000 * 109.58478 * 113.84462 * 9 8 6 32 32 H 1.08996 * 109.56278 * 185.55669 * 10 9 8 33 33 H 1.09000 * 109.35986 * 65.49942 * 10 9 8 34 34 H 1.09006 * 109.46196 * 301.22052 * 11 10 9 35 35 H 1.09005 * 109.47301 * 184.93854 * 12 11 10 36 36 H 1.09002 * 109.47182 * 304.93964 * 12 11 10 37 37 H 0.96999 * 120.00005 * 179.97438 * 16 15 13 38 38 H 1.08997 * 109.49986 * 178.68006 * 21 11 10 39 39 H 1.09004 * 109.51791 * 58.60201 * 21 11 10 40 40 H 1.09000 * 109.58721 * 246.15289 * 22 8 6 41 41 H 1.08999 * 109.58592 * 6.43973 * 22 8 6 42 42 H 1.07995 * 126.52833 * 179.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2831 2.1301 1.0594 5 6 2.7177 3.3574 0.6638 6 6 3.1125 4.4722 1.5438 7 8 3.5978 5.4804 1.0674 8 7 2.9357 4.3742 2.8763 9 6 2.4317 3.1307 3.4750 10 6 1.2143 3.4527 4.3399 11 6 1.5853 4.5349 5.3564 12 6 0.3760 4.8363 6.2438 13 6 0.0375 3.6173 7.0626 14 1 0.6264 2.7176 6.9605 15 6 -1.0232 3.6507 7.9429 16 7 -1.7399 4.7463 8.0675 17 14 -1.4423 2.1399 8.9583 18 1 -0.6973 2.1841 10.2422 19 1 -2.9015 2.1174 9.2333 20 1 -1.0613 0.9170 8.2068 21 6 2.0060 5.8079 4.6182 22 6 3.2376 5.5107 3.7571 23 6 2.7192 3.3619 -0.6971 24 8 2.2915 2.1524 -1.0930 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.1443 2.4356 2.6862 31 1 3.2085 2.6825 4.0947 32 1 0.8926 2.5541 4.8663 33 1 0.4048 3.8124 3.7047 34 1 2.4114 4.1841 5.9751 35 1 0.6116 5.6670 6.9092 36 1 -0.4763 5.1021 5.6185 37 1 -2.4863 4.7698 8.6865 38 1 2.2475 6.5856 5.3427 39 1 1.1891 6.1458 3.9805 40 1 4.0813 5.2606 4.4003 41 1 3.4842 6.3848 3.1543 42 1 3.0093 4.1822 -1.3368 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563187441.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:09 Heat of formation + Delta-G solvation = -43.846945 kcal Electronic energy + Delta-G solvation = -23654.377272 eV Core-core repulsion = 20213.894054 eV Total energy + Delta-G solvation = -3440.483218 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -44.53925 -41.11444 -38.75836 -36.30894 -35.60964 -34.88002 -33.92216 -32.07777 -30.59338 -29.81625 -26.82167 -25.36664 -25.09954 -24.13381 -23.13484 -22.33097 -21.19461 -20.26680 -18.67344 -18.40531 -17.95557 -17.68216 -17.00804 -16.53296 -16.21795 -15.72010 -15.52964 -15.26559 -15.01978 -14.69655 -14.52424 -14.47379 -14.24597 -13.97514 -13.56441 -13.44602 -12.97912 -12.82631 -12.61700 -12.51577 -12.44853 -12.37343 -12.22037 -12.01648 -11.83548 -11.65579 -11.44552 -11.26563 -10.87046 -10.57843 -10.38355 -10.13826 -9.62946 -8.16053 -6.25785 0.04386 0.88733 1.41596 1.42642 1.53568 1.54715 1.88965 2.16106 2.43386 2.76890 3.17456 3.48024 3.76032 3.93086 4.04363 4.10731 4.22812 4.23755 4.27457 4.34754 4.41372 4.46415 4.57408 4.65146 4.69501 4.85408 4.87278 4.96040 5.00773 5.03208 5.07889 5.22432 5.30319 5.35766 5.37527 5.44516 5.55255 5.69757 5.83117 5.88564 6.24702 6.30180 6.49041 6.90133 6.96882 7.42814 8.96092 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015185 B = 0.004315 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.482455 B = 6488.087437 C = 7984.848880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.028 4.028 3 C 0.209 3.791 4 N -0.480 5.480 5 C -0.098 4.098 6 C 0.593 3.407 7 O -0.574 6.574 8 N -0.590 5.590 9 C 0.068 3.932 10 C -0.103 4.103 11 C -0.076 4.076 12 C 0.034 3.966 13 C -0.527 4.527 14 H 0.065 0.935 15 C -0.003 4.003 16 N -0.938 5.938 17 Si 0.961 3.039 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.259 1.259 21 C -0.121 4.121 22 C 0.116 3.884 23 C 0.031 3.969 24 O -0.190 6.190 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.125 0.875 29 H 0.119 0.881 30 H 0.159 0.841 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.036 0.964 34 H 0.061 0.939 35 H -0.012 1.012 36 H -0.017 1.017 37 H 0.261 0.739 38 H 0.077 0.923 39 H 0.045 0.955 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.825 -10.276 -19.464 23.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.065 4.065 3 C 0.000 4.000 4 N -0.210 5.210 5 C -0.216 4.216 6 C 0.382 3.618 7 O -0.456 6.456 8 N -0.319 5.319 9 C -0.053 4.053 10 C -0.142 4.142 11 C -0.094 4.094 12 C -0.003 4.003 13 C -0.565 4.565 14 H 0.083 0.917 15 C -0.200 4.200 16 N -0.578 5.578 17 Si 0.786 3.214 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.183 1.183 21 C -0.159 4.159 22 C -0.006 4.006 23 C -0.043 4.043 24 O -0.076 6.076 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.143 0.857 29 H 0.137 0.863 30 H 0.175 0.825 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.006 0.994 36 H 0.001 0.999 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 8.868 -9.911 -19.000 23.192 hybrid contribution -0.590 0.372 0.536 0.880 sum 8.278 -9.539 -18.464 22.370 Atomic orbital electron populations 1.21802 0.92681 1.04336 1.02122 1.20453 0.96981 0.81695 1.07413 1.27391 0.97008 0.97749 0.77834 1.70213 1.18064 1.03195 1.29524 1.21648 1.11809 0.94304 0.93849 1.17135 0.77863 0.84997 0.81777 1.90752 1.47422 1.31907 1.75480 1.48062 1.62748 1.15647 1.05485 1.23020 0.95521 0.86258 1.00530 1.21609 0.96805 0.99401 0.96358 1.21084 0.97950 0.94699 0.95684 1.19009 0.92524 0.95441 0.93340 1.21644 1.13518 0.99364 1.21982 0.91714 1.25971 0.96326 0.99139 0.98541 1.70114 1.20253 1.29387 1.38093 0.85500 0.77112 0.79791 0.78993 1.19982 1.21155 1.18316 1.21907 0.97132 0.98424 0.98414 1.21685 0.97329 0.89221 0.92325 1.25712 0.96690 0.87049 0.94819 1.84434 1.63173 1.22305 1.37668 0.93602 0.92195 0.88518 0.85724 0.86312 0.82521 0.91519 0.91030 0.94532 0.92070 0.99395 0.99856 0.93019 0.90430 0.93575 0.89923 0.89360 0.72658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.90 71.98 0.71 -0.96 16 2 C -0.03 -0.29 6.56 29.85 0.20 -0.09 16 3 C 0.21 3.92 7.56 88.39 0.67 4.59 16 4 N -0.48 -12.09 7.68 -293.03 -2.25 -14.34 16 5 C -0.10 -2.65 6.74 40.41 0.27 -2.37 16 6 C 0.59 19.30 7.69 86.66 0.67 19.97 16 7 O -0.57 -20.57 16.32 -4.07 -0.07 -20.63 16 8 N -0.59 -19.29 2.98 -823.61 -2.45 -21.75 16 9 C 0.07 2.19 6.29 86.22 0.54 2.73 16 10 C -0.10 -3.97 5.17 30.53 0.16 -3.82 16 11 C -0.08 -3.14 2.10 -10.77 -0.02 -3.17 16 12 C 0.03 1.81 4.45 29.85 0.13 1.94 16 13 C -0.53 -29.62 8.39 25.60 0.21 -29.41 16 14 H 0.06 3.45 7.06 -2.91 -0.02 3.43 16 15 C 0.00 -0.16 5.46 84.66 0.46 0.31 16 16 N -0.94 -57.75 13.29 21.45 0.28 -57.47 16 17 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 19 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 20 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 21 C -0.12 -4.37 5.36 30.67 0.16 -4.21 16 22 C 0.12 3.68 6.42 86.36 0.55 4.24 16 23 C 0.03 0.63 11.95 67.32 0.80 1.43 16 24 O -0.19 -3.45 10.73 0.31 0.00 -3.45 16 25 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.16 4.78 3.63 -57.64 -0.21 4.57 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.07 2.88 6.91 -2.39 -0.02 2.86 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 35 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 36 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 37 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 38 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 40 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.09 2.77 7.03 -2.39 -0.02 2.75 16 42 H 0.26 3.40 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -72.48 342.73 3.88 -68.59 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.81 Total: 11.73 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: 5.53 Total: -8.83 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -4.42 Total: -93.56 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.06 Total: -24.09 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -72.48 3.88 -68.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563187441.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.747 kcal (2) G-P(sol) polarization free energy of solvation -72.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds