Wall clock time and date at job start Tue Mar 31 2020 06:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47254 * 2 1 4 4 C 1.50699 * 109.47436 * 180.02562 * 3 2 1 5 5 N 1.34660 * 125.79984 * 265.02502 * 4 3 2 6 6 H 0.96996 * 124.85205 * 359.94959 * 5 4 3 7 7 C 1.36443 * 110.29857 * 179.97438 * 5 4 3 8 8 C 1.34487 * 108.85564 * 359.74713 * 7 5 4 9 9 C 1.36767 * 125.80237 * 84.99135 * 4 3 2 10 10 C 1.47259 * 126.94269 * 359.97438 * 9 4 3 11 11 O 1.21623 * 120.00238 * 359.97438 * 10 9 4 12 12 N 1.34779 * 119.99842 * 179.97438 * 10 9 4 13 13 C 1.47023 * 125.65028 * 359.95392 * 12 10 9 14 14 C 1.54428 * 107.28135 * 181.09744 * 13 12 10 15 15 C 1.55160 * 102.89386 * 22.18588 * 14 13 12 16 16 O 1.42905 * 111.00102 * 82.59578 * 15 14 13 17 17 C 1.50701 * 111.00410 * 206.40650 * 15 14 13 18 18 H 1.07994 * 120.00187 * 356.81970 * 17 15 14 19 19 C 1.37878 * 119.99769 * 176.82468 * 17 15 14 20 20 N 1.31509 * 120.00073 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 119.99731 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47218 * 59.99675 * 21 19 17 23 23 H 1.48498 * 109.46766 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.46824 * 299.99519 * 21 19 17 25 25 C 1.47433 * 125.64677 * 179.97438 * 12 10 9 26 26 H 1.08999 * 109.47254 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47183 * 300.00212 * 1 2 3 28 28 H 1.08996 * 109.47128 * 60.00026 * 1 2 3 29 29 H 1.08999 * 109.47297 * 239.99519 * 2 1 3 30 30 H 1.09003 * 109.46938 * 119.99687 * 2 1 3 31 31 H 1.08999 * 109.47361 * 59.99559 * 3 2 1 32 32 H 1.09003 * 109.46892 * 299.99715 * 3 2 1 33 33 H 1.08006 * 125.57465 * 180.02562 * 7 5 4 34 34 H 1.08002 * 126.83517 * 180.24828 * 8 7 5 35 35 H 1.08996 * 109.88347 * 300.51248 * 13 12 10 36 36 H 1.09002 * 109.87899 * 61.53090 * 13 12 10 37 37 H 1.08999 * 110.72281 * 263.84993 * 14 13 12 38 38 H 1.08996 * 110.76416 * 140.54540 * 14 13 12 39 39 H 0.96697 * 113.99904 * 183.18164 * 16 15 14 40 40 H 0.97000 * 120.00160 * 180.02562 * 20 19 17 41 41 H 1.09000 * 110.36418 * 37.00051 * 25 12 10 42 42 H 1.08997 * 110.36595 * 274.67504 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3351 1.5371 1.0871 6 1 4.0142 1.6170 1.9989 7 6 5.6498 1.5050 0.7233 8 6 5.7279 1.3828 -0.6137 9 6 4.3466 1.3459 -1.1060 10 6 3.9092 1.2228 -2.5067 11 8 2.7229 1.1984 -2.7735 12 7 4.8236 1.1371 -3.4932 13 6 6.2827 1.1551 -3.3130 14 6 6.9194 1.0606 -4.7168 15 6 5.7841 1.5646 -5.6466 16 8 5.7583 2.9926 -5.6957 17 6 5.9199 0.9817 -7.0297 18 1 6.7622 0.3497 -7.2690 19 6 4.9687 1.2556 -7.9895 20 7 3.9428 2.0250 -7.6980 21 14 5.1367 0.5325 -9.7038 22 1 5.1428 -0.9499 -9.6173 23 1 3.9930 0.9744 -10.5415 24 1 6.4075 0.9980 -10.3149 25 6 4.5264 1.0103 -4.9316 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 6.4903 1.5633 1.3991 34 1 6.6285 1.3256 -1.2071 35 1 6.5852 2.0846 -2.8307 36 1 6.5916 0.3045 -2.7054 37 1 7.1818 0.0293 -4.9526 38 1 7.7932 1.7082 -4.7891 39 1 5.0352 3.3549 -6.2257 40 1 3.2735 2.2173 -8.3732 41 1 3.6499 1.6037 -5.1916 42 1 4.3696 -0.0355 -5.1958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592855383.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:51 Heat of formation + Delta-G solvation = -46.988371 kcal Electronic energy + Delta-G solvation = -24085.661793 eV Core-core repulsion = 20645.042353 eV Total energy + Delta-G solvation = -3440.619440 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.13400 -38.82203 -36.87750 -34.90619 -34.07780 -32.12073 -31.07869 -29.89053 -29.74991 -27.69546 -26.11889 -25.01535 -23.04469 -21.62591 -20.97821 -20.56960 -19.46335 -18.00048 -17.42290 -17.04494 -15.64151 -15.17803 -14.97949 -14.89595 -14.58397 -14.17740 -14.07065 -13.84684 -13.23391 -12.92130 -12.89017 -12.83833 -12.69305 -12.45672 -11.84595 -11.64760 -11.49972 -11.31158 -11.16324 -11.15538 -10.96575 -10.62497 -10.55680 -10.47492 -10.42180 -10.10733 -9.30632 -9.10661 -8.65408 -8.61738 -8.27545 -8.07636 -7.53248 -6.21729 -4.31277 2.06010 2.61483 3.23221 3.26264 3.31632 3.33479 3.98158 4.12890 4.32005 4.80150 4.99345 5.05164 5.09244 5.15141 5.39510 5.42136 5.52661 5.55326 5.68577 5.80245 5.81022 5.90956 5.96144 6.02108 6.04307 6.16987 6.18898 6.34569 6.39953 6.45233 6.62054 6.82480 6.92753 6.97755 7.05919 7.23637 7.37311 7.46349 7.54421 7.80905 8.09172 8.48065 8.71925 9.05776 9.37821 9.49414 10.85397 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021081 B = 0.004393 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.908928 B = 6371.529510 C = 7314.705636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.055 4.055 4 C 0.097 3.903 5 N -0.555 5.555 6 H 0.411 0.589 7 C -0.028 4.028 8 C -0.174 4.174 9 C -0.216 4.216 10 C 0.593 3.407 11 O -0.560 6.560 12 N -0.603 5.603 13 C 0.106 3.894 14 C -0.121 4.121 15 C 0.249 3.751 16 O -0.583 6.583 17 C -0.538 4.538 18 H 0.066 0.934 19 C 0.072 3.928 20 N -0.894 5.894 21 Si 0.903 3.097 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.275 1.275 25 C 0.097 3.903 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.166 0.834 34 H 0.155 0.845 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.383 0.617 40 H 0.270 0.730 41 H 0.083 0.917 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.327 -1.984 17.317 17.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.093 4.093 4 C -0.021 4.021 5 N -0.151 5.151 6 H 0.247 0.753 7 C -0.155 4.155 8 C -0.199 4.199 9 C -0.226 4.226 10 C 0.383 3.617 11 O -0.441 6.441 12 N -0.335 5.335 13 C -0.017 4.017 14 C -0.159 4.159 15 C 0.208 3.792 16 O -0.392 6.392 17 C -0.577 4.577 18 H 0.084 0.916 19 C -0.132 4.132 20 N -0.532 5.532 21 Si 0.730 3.270 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.025 4.025 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.123 0.877 33 H 0.183 0.817 34 H 0.172 0.828 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.233 0.767 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.008 -1.972 17.644 17.754 hybrid contribution -0.372 -0.286 -0.803 0.930 sum -0.364 -2.258 16.841 16.996 Atomic orbital electron populations 1.21740 0.95591 1.01530 1.01793 1.21397 0.95756 0.95663 1.02158 1.20346 0.86826 0.98461 1.03708 1.20267 0.93267 1.02788 0.85729 1.41540 1.06240 1.58822 1.08468 0.75319 1.21702 0.85516 1.11652 0.96608 1.22657 0.96732 1.06828 0.93644 1.20308 0.93044 1.16625 0.92602 1.16974 0.84743 0.76672 0.83281 1.90696 1.16205 1.53203 1.84019 1.48454 1.06039 1.70756 1.08221 1.22238 0.81250 0.99812 0.98428 1.22687 0.99044 1.01197 0.92974 1.19606 0.88171 0.79518 0.91919 1.86083 1.56311 1.21542 1.75289 1.21463 1.09307 1.31437 0.95465 0.91629 1.25069 0.94457 0.94315 0.99319 1.69651 1.11793 1.36702 1.35099 0.86476 0.77726 0.79510 0.83261 1.20047 1.21112 1.20034 1.23199 1.02393 1.00739 0.76118 0.92841 0.93254 0.92058 0.90793 0.93045 0.91973 0.87731 0.81712 0.82791 0.91954 0.92558 0.90579 0.90847 0.76660 0.91953 0.89848 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 37.16 0.37 -1.27 16 2 C -0.11 -1.41 5.92 -26.73 -0.16 -1.57 16 3 C -0.06 -0.73 5.07 -27.88 -0.14 -0.87 16 4 C 0.10 1.39 6.43 -81.88 -0.53 0.86 16 5 N -0.56 -5.97 5.90 -9.11 -0.05 -6.02 16 6 H 0.41 2.88 8.96 -40.82 -0.37 2.52 16 7 C -0.03 -0.31 11.89 -16.83 -0.20 -0.51 16 8 C -0.17 -2.51 9.39 -37.50 -0.35 -2.87 16 9 C -0.22 -3.78 6.23 -103.35 -0.64 -4.42 16 10 C 0.59 12.79 7.84 -12.59 -0.10 12.69 16 11 O -0.56 -13.36 15.01 5.26 0.08 -13.28 16 12 N -0.60 -13.21 3.33 -171.76 -0.57 -13.78 16 13 C 0.11 1.97 5.00 -3.01 -0.02 1.95 16 14 C -0.12 -2.47 6.13 -24.84 -0.15 -2.62 16 15 C 0.25 6.16 0.88 -89.61 -0.08 6.08 16 16 O -0.58 -15.29 13.17 -35.23 -0.46 -15.75 16 17 C -0.54 -14.23 8.26 -34.44 -0.28 -14.51 16 18 H 0.07 1.69 7.78 -52.49 -0.41 1.28 16 19 C 0.07 1.89 5.29 -17.82 -0.09 1.80 16 20 N -0.89 -24.24 10.69 55.43 0.59 -23.65 16 21 Si 0.90 20.58 29.54 -169.99 -5.02 15.55 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 C 0.10 2.42 5.51 -2.52 -0.01 2.40 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.16 7.96 -51.93 -0.41 0.74 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.10 1.67 6.75 -51.93 -0.35 1.32 16 33 H 0.17 1.22 8.06 -52.48 -0.42 0.79 16 34 H 0.15 2.07 4.79 -52.49 -0.25 1.82 16 35 H 0.06 1.11 6.86 -51.93 -0.36 0.75 16 36 H 0.06 0.90 6.98 -51.93 -0.36 0.54 16 37 H 0.08 1.46 8.03 -51.93 -0.42 1.04 16 38 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 39 H 0.38 10.34 7.25 45.56 0.33 10.67 16 40 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 41 H 0.08 2.32 7.47 -51.93 -0.39 1.93 16 42 H 0.06 1.47 8.03 -51.93 -0.42 1.06 16 LS Contribution 338.77 15.07 5.11 5.11 Total: -1.00 -31.17 338.77 -8.22 -39.39 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -5.49 Total: 15.28 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -2.39 Total: -2.84 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: -0.03 Total: -43.45 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -0.39 Total: -29.03 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.17 -8.22 -39.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592855383.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.601 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds