Wall clock time and date at job start Tue Mar 31 2020 06:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47254 * 2 1 4 4 C 1.50699 * 109.47436 * 180.02562 * 3 2 1 5 5 N 1.34660 * 125.79984 * 265.02502 * 4 3 2 6 6 H 0.96996 * 124.85205 * 359.94959 * 5 4 3 7 7 C 1.36443 * 110.29857 * 179.97438 * 5 4 3 8 8 C 1.34487 * 108.85564 * 359.74713 * 7 5 4 9 9 C 1.36767 * 125.80237 * 84.99135 * 4 3 2 10 10 C 1.47259 * 126.94269 * 359.97438 * 9 4 3 11 11 O 1.21623 * 120.00238 * 359.97438 * 10 9 4 12 12 N 1.34779 * 119.99842 * 179.97438 * 10 9 4 13 13 C 1.47023 * 125.65028 * 359.95392 * 12 10 9 14 14 C 1.54428 * 107.28135 * 181.09744 * 13 12 10 15 15 C 1.55160 * 102.89386 * 22.18588 * 14 13 12 16 16 O 1.42905 * 111.00102 * 82.59578 * 15 14 13 17 17 C 1.50701 * 111.00410 * 206.40650 * 15 14 13 18 18 H 1.07994 * 120.00187 * 356.81970 * 17 15 14 19 19 C 1.37878 * 119.99769 * 176.82468 * 17 15 14 20 20 N 1.31509 * 120.00073 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 119.99731 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47218 * 59.99675 * 21 19 17 23 23 H 1.48498 * 109.46766 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.46824 * 299.99519 * 21 19 17 25 25 C 1.47433 * 125.64677 * 179.97438 * 12 10 9 26 26 H 1.08999 * 109.47254 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47183 * 300.00212 * 1 2 3 28 28 H 1.08996 * 109.47128 * 60.00026 * 1 2 3 29 29 H 1.08999 * 109.47297 * 239.99519 * 2 1 3 30 30 H 1.09003 * 109.46938 * 119.99687 * 2 1 3 31 31 H 1.08999 * 109.47361 * 59.99559 * 3 2 1 32 32 H 1.09003 * 109.46892 * 299.99715 * 3 2 1 33 33 H 1.08006 * 125.57465 * 180.02562 * 7 5 4 34 34 H 1.08002 * 126.83517 * 180.24828 * 8 7 5 35 35 H 1.08996 * 109.88347 * 300.51248 * 13 12 10 36 36 H 1.09002 * 109.87899 * 61.53090 * 13 12 10 37 37 H 1.08999 * 110.72281 * 263.84993 * 14 13 12 38 38 H 1.08996 * 110.76416 * 140.54540 * 14 13 12 39 39 H 0.96697 * 113.99904 * 183.18164 * 16 15 14 40 40 H 0.97000 * 120.00160 * 180.02562 * 20 19 17 41 41 H 1.09000 * 110.36418 * 37.00051 * 25 12 10 42 42 H 1.08997 * 110.36595 * 274.67504 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3351 1.5371 1.0871 6 1 4.0142 1.6170 1.9989 7 6 5.6498 1.5050 0.7233 8 6 5.7279 1.3828 -0.6137 9 6 4.3466 1.3459 -1.1060 10 6 3.9092 1.2228 -2.5067 11 8 2.7229 1.1984 -2.7735 12 7 4.8236 1.1371 -3.4932 13 6 6.2827 1.1551 -3.3130 14 6 6.9194 1.0606 -4.7168 15 6 5.7841 1.5646 -5.6466 16 8 5.7583 2.9926 -5.6957 17 6 5.9199 0.9817 -7.0297 18 1 6.7622 0.3497 -7.2690 19 6 4.9687 1.2556 -7.9895 20 7 3.9428 2.0250 -7.6980 21 14 5.1367 0.5325 -9.7038 22 1 5.1428 -0.9499 -9.6173 23 1 3.9930 0.9744 -10.5415 24 1 6.4075 0.9980 -10.3149 25 6 4.5264 1.0103 -4.9316 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 6.4903 1.5633 1.3991 34 1 6.6285 1.3256 -1.2071 35 1 6.5852 2.0846 -2.8307 36 1 6.5916 0.3045 -2.7054 37 1 7.1818 0.0293 -4.9526 38 1 7.7932 1.7082 -4.7891 39 1 5.0352 3.3549 -6.2257 40 1 3.2735 2.2173 -8.3732 41 1 3.6499 1.6037 -5.1916 42 1 4.3696 -0.0355 -5.1958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592855383.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:49 Heat of formation + Delta-G solvation = -69.245449 kcal Electronic energy + Delta-G solvation = -24086.626932 eV Core-core repulsion = 20645.042353 eV Total energy + Delta-G solvation = -3441.584580 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 4.58 seconds Orbital eigenvalues (eV) -42.22099 -40.49502 -38.65357 -36.19429 -35.67523 -34.18689 -32.39210 -31.43672 -30.81847 -29.49732 -27.47329 -26.63948 -24.61566 -22.76168 -22.26684 -21.76514 -21.24920 -19.41940 -19.07718 -18.47715 -17.17885 -17.07562 -16.60088 -16.37317 -15.95255 -15.68155 -15.35421 -14.89277 -14.73609 -14.69630 -14.46651 -14.15062 -13.87983 -13.66041 -13.44644 -13.39567 -13.12386 -12.79661 -12.68648 -12.37970 -12.31453 -12.25497 -12.12382 -12.10854 -12.05484 -11.57989 -11.17638 -10.80349 -10.62436 -10.28077 -9.75817 -9.42644 -9.00530 -8.23714 -6.41515 0.79927 1.43760 1.44394 1.52883 1.61033 2.16231 2.38728 2.53185 2.62955 3.02237 3.78593 3.82107 3.93175 4.04278 4.15203 4.17210 4.25852 4.35709 4.41770 4.51597 4.58263 4.62547 4.74903 4.77724 4.82938 4.94759 5.04926 5.06234 5.08822 5.11822 5.23814 5.36200 5.38626 5.40445 5.45693 5.54314 5.76930 5.83373 6.04520 6.08569 6.65170 6.72866 6.86546 7.29779 7.36861 7.40943 8.81747 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021081 B = 0.004393 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.908928 B = 6371.529510 C = 7314.705636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.054 4.054 4 C 0.101 3.899 5 N -0.533 5.533 6 H 0.434 0.566 7 C 0.005 3.995 8 C -0.202 4.202 9 C -0.262 4.262 10 C 0.580 3.420 11 O -0.601 6.601 12 N -0.613 5.613 13 C 0.112 3.888 14 C -0.115 4.115 15 C 0.233 3.767 16 O -0.588 6.588 17 C -0.559 4.559 18 H 0.070 0.930 19 C 0.025 3.975 20 N -0.919 5.919 21 Si 0.966 3.034 22 H -0.270 1.270 23 H -0.285 1.285 24 H -0.268 1.268 25 C 0.111 3.889 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.039 0.961 29 H 0.031 0.969 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.215 0.785 34 H 0.160 0.840 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.374 0.626 40 H 0.269 0.731 41 H 0.040 0.960 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.059 -2.486 20.389 20.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.092 4.092 4 C -0.018 4.018 5 N -0.130 5.130 6 H 0.274 0.726 7 C -0.123 4.123 8 C -0.225 4.225 9 C -0.272 4.272 10 C 0.374 3.626 11 O -0.485 6.485 12 N -0.344 5.344 13 C -0.010 4.010 14 C -0.153 4.153 15 C 0.192 3.808 16 O -0.397 6.397 17 C -0.597 4.597 18 H 0.088 0.912 19 C -0.176 4.176 20 N -0.558 5.558 21 Si 0.791 3.209 22 H -0.195 1.195 23 H -0.211 1.211 24 H -0.192 1.192 25 C -0.012 4.012 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.119 0.881 32 H 0.085 0.915 33 H 0.231 0.769 34 H 0.178 0.822 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.223 0.777 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.779 -2.475 20.770 20.993 hybrid contribution -0.941 -0.115 -1.667 1.918 sum 0.837 -2.590 19.103 19.296 Atomic orbital electron populations 1.21723 0.94429 1.02187 1.02024 1.21333 0.96790 0.95121 1.01206 1.20316 0.86520 0.98734 1.03674 1.20286 0.93733 1.01653 0.86145 1.41522 1.05906 1.56827 1.08729 0.72569 1.22351 0.86406 1.07524 0.95971 1.22771 0.95357 1.09063 0.95338 1.20173 0.95752 1.20495 0.90739 1.17788 0.84204 0.75613 0.85045 1.90656 1.17926 1.54956 1.84969 1.48535 1.07749 1.71246 1.06852 1.22374 0.78961 1.01824 0.97794 1.22705 0.97962 1.01880 0.92737 1.19855 0.89818 0.78631 0.92478 1.86071 1.55832 1.22673 1.75082 1.21816 1.09560 1.31749 0.96546 0.91157 1.25864 0.94070 0.94615 1.03006 1.69786 1.12337 1.37643 1.36018 0.85481 0.77752 0.78863 0.78780 1.19475 1.21093 1.19241 1.22741 1.01069 0.98580 0.78800 0.92016 0.90572 0.94221 0.94970 0.90575 0.88134 0.91522 0.76866 0.82241 0.90794 0.89321 0.89339 0.89535 0.77691 0.92123 0.94129 0.94327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.91 71.98 0.71 -2.41 16 2 C -0.11 -2.64 5.92 30.59 0.18 -2.46 16 3 C -0.05 -1.39 5.07 29.85 0.15 -1.24 16 4 C 0.10 2.75 6.43 41.78 0.27 3.02 16 5 N -0.53 -9.18 5.90 -182.72 -1.08 -10.25 16 6 H 0.43 3.73 8.96 -92.71 -0.83 2.90 16 7 C 0.01 0.09 11.89 83.12 0.99 1.08 16 8 C -0.20 -5.28 9.39 23.62 0.22 -5.06 16 9 C -0.26 -9.06 6.23 -19.04 -0.12 -9.18 16 10 C 0.58 26.28 7.84 86.61 0.68 26.96 16 11 O -0.60 -31.02 15.01 -4.10 -0.06 -31.08 16 12 N -0.61 -27.85 3.33 -815.59 -2.71 -30.56 16 13 C 0.11 4.09 5.00 86.76 0.43 4.52 16 14 C -0.12 -4.62 6.13 31.82 0.20 -4.42 16 15 C 0.23 11.86 0.88 -10.14 -0.01 11.85 16 16 O -0.59 -31.95 13.17 -148.98 -1.96 -33.91 16 17 C -0.56 -30.11 8.26 25.60 0.21 -29.90 16 18 H 0.07 3.63 7.78 -2.91 -0.02 3.60 16 19 C 0.03 1.35 5.29 84.66 0.45 1.80 16 20 N -0.92 -52.06 10.69 21.45 0.23 -51.83 16 21 Si 0.97 42.83 29.54 68.60 2.03 44.85 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 C 0.11 5.88 5.51 86.86 0.48 6.36 16 26 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.03 1.05 7.96 -2.39 -0.02 1.03 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 2.25 6.75 -2.39 -0.02 2.24 16 33 H 0.21 1.64 8.06 -2.91 -0.02 1.61 16 34 H 0.16 3.84 4.79 -2.91 -0.01 3.83 16 35 H 0.07 2.52 6.86 -2.39 -0.02 2.51 16 36 H 0.09 2.66 6.98 -2.39 -0.02 2.65 16 37 H 0.09 3.29 8.03 -2.39 -0.02 3.27 16 38 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 39 H 0.37 21.34 7.25 -74.06 -0.54 20.80 16 40 H 0.27 14.65 8.31 -92.71 -0.77 13.87 16 41 H 0.04 2.45 7.47 -2.39 -0.02 2.43 16 42 H 0.04 2.12 8.03 -2.39 -0.02 2.10 16 Total: -1.00 -73.76 338.77 0.96 -72.80 By element: Atomic # 1 Polarization: 39.39 SS G_CDS: -0.32 Total: 39.08 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 4.84 Total: 0.91 kcal Atomic # 7 Polarization: -89.09 SS G_CDS: -3.56 Total: -92.65 kcal Atomic # 8 Polarization: -62.97 SS G_CDS: -2.02 Total: -64.99 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -73.76 0.96 -72.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592855383.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.555 kcal (2) G-P(sol) polarization free energy of solvation -73.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.58 seconds