Wall clock time and date at job start Tue Mar 31 2020 06:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47319 * 2 1 4 4 C 1.50698 * 109.47029 * 239.99734 * 2 1 3 5 5 C 1.41260 * 126.70698 * 84.71489 * 4 2 1 6 6 C 1.36823 * 103.85127 * 179.85636 * 5 4 2 7 7 C 1.47510 * 126.94487 * 180.12464 * 6 5 4 8 8 O 1.21579 * 120.00046 * 7.19710 * 7 6 5 9 9 N 1.34781 * 119.99759 * 187.19414 * 7 6 5 10 10 C 1.46922 * 120.63008 * 6.68692 * 9 7 6 11 11 C 1.53618 * 108.54070 * 126.37053 * 10 9 7 12 12 C 1.53040 * 109.24518 * 54.85668 * 11 10 9 13 13 C 1.53041 * 109.53729 * 298.50945 * 12 11 10 14 14 H 1.08997 * 109.49726 * 301.41754 * 13 12 11 15 15 C 1.50692 * 109.52586 * 181.33032 * 13 12 11 16 16 H 1.08005 * 120.00186 * 0.14177 * 15 13 12 17 17 C 1.37881 * 120.00273 * 180.14628 * 15 13 12 18 18 N 1.31513 * 120.00402 * 179.97438 * 17 15 13 19 19 Si 1.86803 * 119.99747 * 0.02562 * 17 15 13 20 20 H 1.48505 * 109.47012 * 89.99900 * 19 17 15 21 21 H 1.48497 * 109.47138 * 210.00095 * 19 17 15 22 22 H 1.48501 * 109.47092 * 330.00092 * 19 17 15 23 23 C 1.46922 * 120.62781 * 186.97253 * 9 7 6 24 24 O 1.34642 * 106.10903 * 0.40022 * 6 5 4 25 25 N 1.20886 * 111.46724 * 359.72490 * 24 6 5 26 26 H 1.08999 * 109.47332 * 300.00524 * 1 2 3 27 27 H 1.09001 * 109.47635 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47340 * 59.99853 * 1 2 3 29 29 H 1.09004 * 109.47139 * 119.99677 * 2 1 3 30 30 H 1.08998 * 109.47241 * 60.00030 * 3 2 1 31 31 H 1.09000 * 109.47492 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.47192 * 299.99670 * 3 2 1 33 33 H 1.08006 * 128.07056 * 359.97438 * 5 4 2 34 34 H 1.09009 * 109.58616 * 246.20145 * 10 9 7 35 35 H 1.08995 * 109.58958 * 6.62757 * 10 9 7 36 36 H 1.08999 * 109.63815 * 294.85927 * 11 10 9 37 37 H 1.09008 * 109.43509 * 174.72215 * 11 10 9 38 38 H 1.08996 * 109.46261 * 178.48577 * 12 11 10 39 39 H 1.09005 * 109.45800 * 58.53057 * 12 11 10 40 40 H 0.96998 * 120.00427 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.59055 * 353.36567 * 23 9 7 42 42 H 1.08997 * 109.59461 * 113.65481 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 2.2153 -0.1493 -2.5138 6 6 2.6849 -1.1930 -3.2637 7 6 3.0491 -1.1646 -4.6928 8 8 3.0685 -0.1083 -5.2944 9 7 3.3606 -2.3098 -5.3317 10 6 3.2016 -3.6078 -4.6619 11 6 2.3374 -4.5140 -5.5517 12 6 2.9645 -4.5989 -6.9451 13 6 3.0049 -3.2042 -7.5740 14 1 1.9935 -2.8023 -7.6329 15 6 3.5924 -3.2930 -8.9588 16 1 3.9040 -4.2491 -9.3531 17 6 3.7324 -2.1537 -9.7227 18 7 4.2456 -2.2311 -10.9311 19 14 3.1944 -0.5000 -9.0406 20 1 4.3325 0.1363 -8.3299 21 1 2.7552 0.3764 -10.1561 22 1 2.0678 -0.6980 -8.0936 23 6 3.8715 -2.2834 -6.7090 24 8 2.7414 -2.2527 -2.4350 25 7 2.3768 -1.9621 -1.3197 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 2.0300 0.8669 -2.8290 34 1 4.1803 -4.0640 -4.5121 35 1 2.7117 -3.4644 -3.6988 36 1 1.3322 -4.0998 -5.6297 37 1 2.2875 -5.5111 -5.1139 38 1 2.3687 -5.2626 -7.5717 39 1 3.9787 -4.9901 -6.8637 40 1 4.3444 -1.4296 -11.4684 41 1 3.8237 -1.2660 -7.0971 42 1 4.9044 -2.6314 -6.7225 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911611.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:37 Heat of formation + Delta-G solvation = 24.604203 kcal Electronic energy + Delta-G solvation = -24069.892102 eV Core-core repulsion = 20632.377149 eV Total energy + Delta-G solvation = -3437.514953 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.11660 -39.80682 -37.23379 -36.79155 -33.64402 -32.62908 -32.20539 -31.70877 -30.46745 -27.56946 -25.76838 -25.30175 -24.25988 -22.96430 -22.10191 -21.53605 -19.81363 -18.99487 -17.85965 -17.45555 -16.73273 -16.53472 -15.99040 -14.90031 -14.74504 -14.63214 -14.28913 -14.18824 -13.82722 -13.63790 -13.44493 -13.07804 -12.90563 -12.58782 -12.51623 -12.25482 -11.98842 -11.83770 -11.67504 -11.34324 -11.15035 -11.09525 -10.64100 -10.46585 -10.25139 -10.19183 -10.03717 -9.79573 -9.73903 -9.30274 -9.15904 -8.65440 -8.23591 -6.13824 -4.15812 0.79379 1.92693 2.59259 3.09020 3.28624 3.34592 3.44507 3.53851 3.74544 4.22337 4.38742 4.61144 4.71421 4.77663 4.87275 5.01549 5.17478 5.18275 5.25455 5.27453 5.34463 5.44985 5.48482 5.54032 5.60403 5.80013 5.83762 5.86678 5.89062 6.01469 6.04188 6.08958 6.35541 6.42958 6.55756 6.67346 6.72256 7.08739 7.36956 7.55721 7.66267 7.94722 8.19662 8.45055 8.89531 9.47280 10.98063 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024770 B = 0.004414 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.116124 B = 6341.853786 C = 7151.969721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.016 4.016 3 C -0.147 4.147 4 C 0.020 3.980 5 C -0.157 4.157 6 C -0.067 4.067 7 C 0.590 3.410 8 O -0.518 6.518 9 N -0.590 5.590 10 C 0.098 3.902 11 C -0.135 4.135 12 C -0.102 4.102 13 C 0.005 3.995 14 H 0.032 0.968 15 C -0.517 4.517 16 H 0.079 0.921 17 C 0.073 3.927 18 N -0.895 5.895 19 Si 0.876 3.124 20 H -0.273 1.273 21 H -0.294 1.294 22 H -0.261 1.261 23 C 0.101 3.899 24 O 0.114 5.886 25 N -0.354 5.354 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.180 0.820 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.266 0.734 41 H 0.081 0.919 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.269 2.363 21.746 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.035 4.035 3 C -0.205 4.205 4 C -0.138 4.138 5 C -0.179 4.179 6 C -0.133 4.133 7 C 0.374 3.626 8 O -0.395 6.395 9 N -0.321 5.321 10 C -0.025 4.025 11 C -0.173 4.173 12 C -0.139 4.139 13 C -0.015 4.015 14 H 0.050 0.950 15 C -0.555 4.555 16 H 0.097 0.903 17 C -0.130 4.130 18 N -0.532 5.532 19 Si 0.706 3.294 20 H -0.200 1.200 21 H -0.222 1.222 22 H -0.186 1.186 23 C -0.018 4.018 24 O 0.045 5.955 25 N -0.057 5.057 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.198 0.802 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.099 0.901 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.148 1.995 22.082 22.762 hybrid contribution -0.245 1.644 -0.142 1.668 sum -5.394 3.640 21.940 22.885 Atomic orbital electron populations 1.21837 0.93256 1.02518 1.02626 1.19539 0.96231 0.95474 0.92288 1.21864 1.01609 0.94223 1.02758 1.23560 1.02512 0.90501 0.97224 1.22776 1.02221 1.01437 0.91503 1.24483 1.06281 0.87989 0.94510 1.16801 0.78657 0.84945 0.82216 1.90862 1.53531 1.30266 1.64808 1.48424 1.62165 1.05280 1.16264 1.22218 1.01011 0.83410 0.95876 1.22057 0.99275 0.98631 0.97331 1.21464 1.00196 0.98910 0.93348 1.19499 0.95971 0.91514 0.94490 0.94950 1.20943 1.42106 0.96083 0.96332 0.90315 1.25050 0.94190 0.99039 0.94676 1.69883 1.44190 1.29467 1.09627 0.87030 0.80560 0.84001 0.77827 1.19963 1.22151 1.18585 1.22812 0.98872 1.02859 0.77296 1.85116 1.62713 1.33827 1.13866 1.73678 1.14598 1.17026 1.00414 0.91461 0.92295 0.92005 0.89263 0.91445 0.92128 0.91832 0.80243 0.90662 0.89260 0.91938 0.91225 0.91976 0.92290 0.92443 0.90142 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.17 37.16 0.34 -0.74 16 2 C -0.02 -0.14 3.38 -91.78 -0.31 -0.45 16 3 C -0.15 -1.04 8.81 37.15 0.33 -0.72 16 4 C 0.02 0.24 6.20 -82.17 -0.51 -0.27 16 5 C -0.16 -2.06 10.14 -38.95 -0.39 -2.46 16 6 C -0.07 -1.02 6.90 -36.32 -0.25 -1.27 16 7 C 0.59 11.05 7.68 -12.48 -0.10 10.96 16 8 O -0.52 -11.42 16.35 5.30 0.09 -11.33 16 9 N -0.59 -10.93 2.97 -173.74 -0.52 -11.45 16 10 C 0.10 1.43 6.18 -3.49 -0.02 1.41 16 11 C -0.13 -1.99 6.10 -26.39 -0.16 -2.15 16 12 C -0.10 -1.86 5.11 -26.69 -0.14 -1.99 16 13 C 0.00 0.11 1.84 -91.65 -0.17 -0.06 16 14 H 0.03 0.78 7.21 -51.93 -0.37 0.41 16 15 C -0.52 -14.03 9.15 -34.44 -0.32 -14.35 16 16 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 17 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 18 N -0.89 -27.03 13.96 55.43 0.77 -26.26 16 19 Si 0.88 22.73 24.32 -169.99 -4.13 18.59 16 20 H -0.27 -7.09 6.92 56.52 0.39 -6.70 16 21 H -0.29 -7.61 7.11 56.52 0.40 -7.20 16 22 H -0.26 -6.76 6.53 56.52 0.37 -6.39 16 23 C 0.10 2.21 5.12 -3.71 -0.02 2.19 16 24 O 0.11 1.61 7.92 15.55 0.12 1.73 16 25 N -0.35 -4.82 12.04 33.52 0.40 -4.41 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.45 7.49 -51.92 -0.39 0.06 16 33 H 0.18 2.09 7.66 -52.48 -0.40 1.69 16 34 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 35 H 0.09 1.19 4.24 -52.67 -0.22 0.97 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.08 1.97 2.31 -51.93 -0.12 1.85 16 42 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 332.24 15.07 5.01 5.01 Total: -1.00 -31.65 332.24 -6.25 -37.89 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -6.18 Total: -1.88 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -1.81 Total: -7.89 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: 0.66 Total: -42.12 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.21 Total: -9.60 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.13 Total: 18.59 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.65 -6.25 -37.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911611.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.496 kcal (2) G-P(sol) polarization free energy of solvation -31.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds