Wall clock time and date at job start Tue Mar 31 2020 06:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47319 * 2 1 4 4 C 1.50698 * 109.47029 * 239.99734 * 2 1 3 5 5 C 1.41260 * 126.70698 * 84.71489 * 4 2 1 6 6 C 1.36823 * 103.85127 * 179.85636 * 5 4 2 7 7 C 1.47510 * 126.94487 * 180.12464 * 6 5 4 8 8 O 1.21579 * 120.00046 * 7.19710 * 7 6 5 9 9 N 1.34781 * 119.99759 * 187.19414 * 7 6 5 10 10 C 1.46922 * 120.63008 * 6.68692 * 9 7 6 11 11 C 1.53618 * 108.54070 * 126.37053 * 10 9 7 12 12 C 1.53040 * 109.24518 * 54.85668 * 11 10 9 13 13 C 1.53041 * 109.53729 * 298.50945 * 12 11 10 14 14 H 1.08997 * 109.49726 * 301.41754 * 13 12 11 15 15 C 1.50692 * 109.52586 * 181.33032 * 13 12 11 16 16 H 1.08005 * 120.00186 * 0.14177 * 15 13 12 17 17 C 1.37881 * 120.00273 * 180.14628 * 15 13 12 18 18 N 1.31513 * 120.00402 * 179.97438 * 17 15 13 19 19 Si 1.86803 * 119.99747 * 0.02562 * 17 15 13 20 20 H 1.48505 * 109.47012 * 89.99900 * 19 17 15 21 21 H 1.48497 * 109.47138 * 210.00095 * 19 17 15 22 22 H 1.48501 * 109.47092 * 330.00092 * 19 17 15 23 23 C 1.46922 * 120.62781 * 186.97253 * 9 7 6 24 24 O 1.34642 * 106.10903 * 0.40022 * 6 5 4 25 25 N 1.20886 * 111.46724 * 359.72490 * 24 6 5 26 26 H 1.08999 * 109.47332 * 300.00524 * 1 2 3 27 27 H 1.09001 * 109.47635 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47340 * 59.99853 * 1 2 3 29 29 H 1.09004 * 109.47139 * 119.99677 * 2 1 3 30 30 H 1.08998 * 109.47241 * 60.00030 * 3 2 1 31 31 H 1.09000 * 109.47492 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.47192 * 299.99670 * 3 2 1 33 33 H 1.08006 * 128.07056 * 359.97438 * 5 4 2 34 34 H 1.09009 * 109.58616 * 246.20145 * 10 9 7 35 35 H 1.08995 * 109.58958 * 6.62757 * 10 9 7 36 36 H 1.08999 * 109.63815 * 294.85927 * 11 10 9 37 37 H 1.09008 * 109.43509 * 174.72215 * 11 10 9 38 38 H 1.08996 * 109.46261 * 178.48577 * 12 11 10 39 39 H 1.09005 * 109.45800 * 58.53057 * 12 11 10 40 40 H 0.96998 * 120.00427 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.59055 * 353.36567 * 23 9 7 42 42 H 1.08997 * 109.59461 * 113.65481 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 6 2.2153 -0.1493 -2.5138 6 6 2.6849 -1.1930 -3.2637 7 6 3.0491 -1.1646 -4.6928 8 8 3.0685 -0.1083 -5.2944 9 7 3.3606 -2.3098 -5.3317 10 6 3.2016 -3.6078 -4.6619 11 6 2.3374 -4.5140 -5.5517 12 6 2.9645 -4.5989 -6.9451 13 6 3.0049 -3.2042 -7.5740 14 1 1.9935 -2.8023 -7.6329 15 6 3.5924 -3.2930 -8.9588 16 1 3.9040 -4.2491 -9.3531 17 6 3.7324 -2.1537 -9.7227 18 7 4.2456 -2.2311 -10.9311 19 14 3.1944 -0.5000 -9.0406 20 1 4.3325 0.1363 -8.3299 21 1 2.7552 0.3764 -10.1561 22 1 2.0678 -0.6980 -8.0936 23 6 3.8715 -2.2834 -6.7090 24 8 2.7414 -2.2527 -2.4350 25 7 2.3768 -1.9621 -1.3197 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 2.0300 0.8669 -2.8290 34 1 4.1803 -4.0640 -4.5121 35 1 2.7117 -3.4644 -3.6988 36 1 1.3322 -4.0998 -5.6297 37 1 2.2875 -5.5111 -5.1139 38 1 2.3687 -5.2626 -7.5717 39 1 3.9787 -4.9901 -6.8637 40 1 4.3444 -1.4296 -11.4684 41 1 3.8237 -1.2660 -7.0971 42 1 4.9044 -2.6314 -6.7225 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597911611.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:37 Heat of formation + Delta-G solvation = 4.580429 kcal Electronic energy + Delta-G solvation = -24070.760398 eV Core-core repulsion = 20632.377149 eV Total energy + Delta-G solvation = -3438.383249 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -46.16491 -41.29028 -38.72759 -37.61360 -35.44791 -33.90378 -33.57351 -32.92148 -32.09664 -28.13477 -27.36399 -26.95135 -25.18724 -24.25385 -23.62526 -22.61117 -21.18958 -20.27865 -19.03501 -18.90273 -18.56659 -17.81491 -17.31634 -16.41460 -16.23049 -15.78430 -15.53721 -15.30268 -15.07762 -14.92293 -14.81209 -14.50771 -14.23183 -14.05731 -13.79681 -13.19710 -13.07523 -12.97957 -12.82722 -12.52631 -12.34938 -12.28175 -12.15643 -11.86441 -11.80524 -11.65420 -11.53579 -11.21620 -11.09008 -11.02869 -10.89231 -10.80997 -9.77049 -8.38366 -6.40841 -0.38933 0.93705 1.23957 1.29412 1.34329 1.42198 1.72876 2.00285 2.21844 2.86505 2.97986 3.14990 3.62289 3.81957 3.94993 4.04392 4.06301 4.09309 4.13472 4.22306 4.38952 4.43019 4.48472 4.56950 4.69093 4.76900 4.80611 4.88403 4.91065 4.92878 4.93512 5.05051 5.12381 5.18397 5.28254 5.30519 5.33946 5.50408 5.60325 5.65611 6.12574 6.25709 6.64982 6.70351 6.97296 7.24907 8.77561 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024770 B = 0.004414 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.116124 B = 6341.853786 C = 7151.969721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.017 4.017 3 C -0.146 4.146 4 C 0.030 3.970 5 C -0.144 4.144 6 C -0.084 4.084 7 C 0.589 3.411 8 O -0.560 6.560 9 N -0.593 5.593 10 C 0.095 3.905 11 C -0.126 4.126 12 C -0.098 4.098 13 C 0.004 3.996 14 H 0.016 0.984 15 C -0.511 4.511 16 H 0.053 0.947 17 C 0.029 3.971 18 N -0.937 5.937 19 Si 0.932 3.068 20 H -0.277 1.277 21 H -0.293 1.293 22 H -0.264 1.264 23 C 0.108 3.892 24 O 0.112 5.888 25 N -0.361 5.361 26 H 0.089 0.911 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.193 0.807 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.057 0.943 37 H 0.110 0.890 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.267 0.733 41 H 0.054 0.946 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.214 2.349 25.189 26.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.036 4.036 3 C -0.203 4.203 4 C -0.128 4.128 5 C -0.167 4.167 6 C -0.149 4.149 7 C 0.375 3.625 8 O -0.440 6.440 9 N -0.324 5.324 10 C -0.027 4.027 11 C -0.164 4.164 12 C -0.136 4.136 13 C -0.016 4.016 14 H 0.035 0.965 15 C -0.549 4.549 16 H 0.071 0.929 17 C -0.170 4.170 18 N -0.577 5.577 19 Si 0.761 3.239 20 H -0.203 1.203 21 H -0.221 1.221 22 H -0.189 1.189 23 C -0.014 4.014 24 O 0.044 5.956 25 N -0.066 5.066 26 H 0.108 0.892 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.210 0.790 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.076 0.924 37 H 0.128 0.872 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.101 1.946 25.553 26.343 hybrid contribution 0.030 1.591 -1.125 1.948 sum -6.071 3.536 24.428 25.419 Atomic orbital electron populations 1.21841 0.92229 1.02292 1.03660 1.19757 0.96971 0.96029 0.90867 1.21883 1.01278 0.93305 1.03878 1.24085 1.01035 0.89840 0.97852 1.23070 1.00353 1.01562 0.91665 1.23887 1.08496 0.89321 0.93222 1.17094 0.77733 0.84233 0.83417 1.90829 1.55301 1.31623 1.66219 1.48408 1.61911 1.06949 1.15098 1.22516 1.02452 0.81537 0.96146 1.22016 0.98445 1.00883 0.95017 1.21399 1.01095 0.95716 0.95378 1.19436 0.94613 0.94721 0.92808 0.96545 1.21277 1.40548 0.94651 0.98441 0.92894 1.25631 0.94726 1.01727 0.94888 1.69980 1.46450 1.30295 1.10948 0.86147 0.79852 0.81087 0.76825 1.20337 1.22073 1.18944 1.22347 0.98908 1.00792 0.79309 1.85084 1.63240 1.33414 1.13874 1.73673 1.15011 1.17901 0.99981 0.89171 0.93141 0.92307 0.88446 0.89284 0.92681 0.91855 0.78980 0.88591 0.87472 0.92415 0.87192 0.92156 0.91675 0.92316 0.92800 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.17 71.98 0.66 -1.03 16 2 C -0.02 -0.24 3.38 -11.54 -0.04 -0.28 16 3 C -0.15 -1.61 8.81 71.98 0.63 -0.98 16 4 C 0.03 0.65 6.20 43.55 0.27 0.92 16 5 C -0.14 -3.50 10.14 22.68 0.23 -3.27 16 6 C -0.08 -2.43 6.90 24.38 0.17 -2.26 16 7 C 0.59 21.65 7.68 86.69 0.67 22.31 16 8 O -0.56 -24.75 16.35 -3.96 -0.06 -24.81 16 9 N -0.59 -21.32 2.97 -821.87 -2.44 -23.76 16 10 C 0.09 2.51 6.18 86.51 0.53 3.05 16 11 C -0.13 -3.34 6.10 30.82 0.19 -3.15 16 12 C -0.10 -3.45 5.11 30.62 0.16 -3.30 16 13 C 0.00 0.17 1.84 -11.46 -0.02 0.15 16 14 H 0.02 0.80 7.21 -2.39 -0.02 0.78 16 15 C -0.51 -28.34 9.15 25.60 0.23 -28.11 16 16 H 0.05 3.16 7.99 -2.91 -0.02 3.13 16 17 C 0.03 1.70 5.45 84.66 0.46 2.17 16 18 N -0.94 -58.19 13.96 21.45 0.30 -57.89 16 19 Si 0.93 48.60 24.32 68.60 1.67 50.27 16 20 H -0.28 -14.44 6.92 99.48 0.69 -13.75 16 21 H -0.29 -15.05 7.11 99.48 0.71 -14.34 16 22 H -0.26 -13.76 6.53 99.48 0.65 -13.11 16 23 C 0.11 4.69 5.12 86.37 0.44 5.13 16 24 O 0.11 2.90 7.92 65.82 0.52 3.42 16 25 N -0.36 -8.91 12.04 -48.86 -0.59 -9.49 16 26 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.71 7.49 -2.38 -0.02 0.70 16 33 H 0.19 4.09 7.66 -2.91 -0.02 4.06 16 34 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 35 H 0.11 2.54 4.24 -14.13 -0.06 2.48 16 36 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.11 2.12 8.14 -2.38 -0.02 2.10 16 38 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 39 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 40 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 41 H 0.05 2.66 2.31 -2.39 -0.01 2.65 16 42 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -70.26 332.24 4.88 -65.38 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: 0.90 Total: 5.52 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 4.58 Total: -8.64 kcal Atomic # 7 Polarization: -88.41 SS G_CDS: -2.73 Total: -91.14 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: 0.46 Total: -21.39 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 1.67 Total: 50.27 kcal Total: -70.26 4.88 -65.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911611.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.964 kcal (2) G-P(sol) polarization free energy of solvation -70.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds