Wall clock time and date at job start Tue Mar 31 2020 06:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47132 * 2 1 4 4 C 1.50697 * 109.47028 * 120.00253 * 2 1 3 5 5 N 1.30008 * 127.33869 * 300.02396 * 4 2 1 6 6 O 1.20657 * 112.30735 * 179.97438 * 5 4 2 7 7 C 1.33491 * 113.15289 * 0.02562 * 6 5 4 8 8 C 1.37366 * 106.34322 * 359.73731 * 7 6 5 9 9 C 1.47392 * 128.56501 * 180.26243 * 8 7 6 10 10 O 1.21612 * 120.00163 * 216.03653 * 9 8 7 11 11 N 1.34774 * 120.00474 * 36.02843 * 9 8 7 12 12 C 1.46927 * 120.62716 * 5.53503 * 11 9 8 13 13 C 1.53621 * 108.54470 * 126.36394 * 12 11 9 14 14 C 1.53039 * 109.24387 * 54.85534 * 13 12 11 15 15 C 1.53041 * 109.53973 * 298.51172 * 14 13 12 16 16 H 1.09001 * 109.49662 * 301.41545 * 15 14 13 17 17 C 1.50700 * 109.50079 * 181.31533 * 15 14 13 18 18 H 1.07996 * 119.99826 * 0.15560 * 17 15 14 19 19 C 1.37875 * 119.99858 * 180.16660 * 17 15 14 20 20 N 1.31514 * 120.00367 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 119.99791 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47176 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47161 * 119.99589 * 21 19 17 24 24 H 1.48504 * 109.47369 * 239.99400 * 21 19 17 25 25 C 1.46926 * 120.63657 * 185.80676 * 11 9 8 26 26 H 1.08998 * 109.47014 * 59.99545 * 1 2 3 27 27 H 1.08995 * 109.46960 * 299.99703 * 1 2 3 28 28 H 1.09000 * 109.47189 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46959 * 240.00112 * 2 1 3 30 30 H 1.09005 * 109.47108 * 60.00203 * 3 2 1 31 31 H 1.09006 * 109.47467 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47542 * 300.00131 * 3 2 1 33 33 H 1.08008 * 126.82676 * 180.02562 * 7 6 5 34 34 H 1.09004 * 109.58792 * 246.19632 * 12 11 9 35 35 H 1.09004 * 109.58780 * 6.62317 * 12 11 9 36 36 H 1.09007 * 109.63748 * 294.86800 * 13 12 11 37 37 H 1.08998 * 109.45892 * 174.74060 * 13 12 11 38 38 H 1.09001 * 109.46312 * 178.49261 * 14 13 12 39 39 H 1.09001 * 109.44834 * 58.52606 * 14 13 12 40 40 H 0.97003 * 120.00387 * 180.02562 * 20 19 17 41 41 H 1.09004 * 109.58387 * 353.38139 * 25 11 9 42 42 H 1.09000 * 109.58643 * 113.80209 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.8075 -0.3934 2.4710 6 8 2.3431 -1.1516 3.2418 7 6 3.0295 -2.1211 2.6328 8 6 2.8767 -1.9138 1.2834 9 6 3.4253 -2.7015 0.1649 10 8 3.7845 -2.1426 -0.8537 11 7 3.5292 -4.0410 0.2710 12 6 2.9898 -4.7430 1.4436 13 6 2.0456 -5.8528 0.9571 14 6 2.7932 -6.7558 -0.0267 15 6 3.2363 -5.9348 -1.2398 16 1 2.3630 -5.4894 -1.7164 17 6 3.9441 -6.8314 -2.2228 18 1 4.0637 -7.8825 -2.0056 19 6 4.4391 -6.3097 -3.3991 20 7 4.2931 -5.0297 -3.6637 21 14 5.3170 -7.4210 -4.6172 22 1 5.3497 -8.8078 -4.0874 23 1 4.5938 -7.4029 -5.9141 24 1 6.7060 -6.9354 -4.8182 25 6 4.1891 -4.8265 -0.7808 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 3.5894 -2.9138 3.1067 34 1 3.8079 -5.1804 2.0159 35 1 2.4386 -4.0404 2.0686 36 1 1.1834 -5.4083 0.4597 37 1 1.7095 -6.4432 1.8094 38 1 2.1345 -7.5603 -0.3538 39 1 3.6690 -7.1804 0.4640 40 1 4.6410 -4.6628 -4.4915 41 1 4.4296 -4.1788 -1.6239 42 1 5.1030 -5.2705 -0.3862 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600094648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:49 Heat of formation + Delta-G solvation = 11.085872 kcal Electronic energy + Delta-G solvation = -24299.595249 eV Core-core repulsion = 20861.494097 eV Total energy + Delta-G solvation = -3438.101152 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -44.84615 -39.42681 -36.86305 -36.08720 -33.70721 -32.46247 -31.76133 -31.46084 -29.75074 -27.17127 -25.75940 -25.13527 -23.69730 -23.16418 -21.93753 -20.13339 -19.98780 -18.78942 -17.64304 -17.28683 -16.57560 -16.05840 -15.42406 -14.91202 -14.59936 -14.47157 -14.23860 -13.84299 -13.41850 -13.32528 -13.28797 -12.73689 -12.65579 -12.24742 -12.22663 -11.98244 -11.70101 -11.32383 -11.30316 -11.06266 -10.99228 -10.73824 -10.56628 -10.48083 -10.29153 -9.96417 -9.86539 -9.63418 -9.39623 -9.16386 -8.97926 -8.48194 -7.84926 -6.03455 -4.12602 1.25551 1.92158 2.98917 3.27358 3.35482 3.36755 3.39198 3.67179 4.10553 4.35063 4.40005 4.88767 5.03825 5.10365 5.12503 5.20078 5.21598 5.27003 5.40440 5.49430 5.58006 5.61040 5.75890 5.79237 5.88577 5.93171 6.05712 6.09800 6.21246 6.23979 6.36695 6.54260 6.59673 6.78565 6.91375 7.06357 7.17726 7.58471 7.81367 7.93717 8.13023 8.25790 8.33541 8.71835 8.91893 9.53527 11.01747 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020148 B = 0.004654 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.350369 B = 6014.463956 C = 6815.579437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.023 4.023 3 C -0.139 4.139 4 C 0.072 3.928 5 N -0.359 5.359 6 O 0.092 5.908 7 C -0.027 4.027 8 C -0.231 4.231 9 C 0.580 3.420 10 O -0.521 6.521 11 N -0.597 5.597 12 C 0.097 3.903 13 C -0.133 4.133 14 C -0.111 4.111 15 C 0.040 3.960 16 H 0.029 0.971 17 C -0.521 4.521 18 H 0.059 0.941 19 C 0.063 3.937 20 N -0.880 5.880 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.113 3.887 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.106 0.894 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.225 0.775 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.050 0.950 40 H 0.263 0.737 41 H 0.125 0.875 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.590 6.185 12.654 14.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.042 4.042 3 C -0.197 4.197 4 C -0.091 4.091 5 N -0.065 5.065 6 O 0.031 5.969 7 C -0.108 4.108 8 C -0.239 4.239 9 C 0.366 3.634 10 O -0.398 6.398 11 N -0.329 5.329 12 C -0.026 4.026 13 C -0.171 4.171 14 C -0.149 4.149 15 C 0.021 3.979 16 H 0.048 0.952 17 C -0.560 4.560 18 H 0.077 0.923 19 C -0.140 4.140 20 N -0.517 5.517 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.006 4.006 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.125 0.875 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.241 0.759 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.143 0.857 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.018 7.562 12.576 15.509 hybrid contribution 0.947 -1.314 -1.078 1.946 sum -4.071 6.249 11.497 13.705 Atomic orbital electron populations 1.21822 0.93561 1.02319 1.02295 1.19713 0.95988 0.95879 0.92643 1.21779 1.01581 0.94231 1.02125 1.24780 0.96954 0.93622 0.93700 1.73549 1.17211 1.13830 1.01893 1.84539 1.48561 1.29845 1.33926 1.26441 0.97776 0.94522 0.92075 1.22667 1.06531 0.99980 0.94703 1.16945 0.79120 0.82022 0.85330 1.90826 1.49300 1.70248 1.29410 1.48403 1.56793 1.05128 1.22587 1.22018 0.97179 0.95164 0.88259 1.22005 0.98459 0.97084 0.99534 1.21636 0.98609 0.97765 0.96855 1.18974 0.95315 0.92248 0.91394 0.95248 1.21105 1.37423 0.94893 1.02559 0.92263 1.25055 0.95922 0.95059 0.97972 1.69891 1.45292 1.11529 1.24991 0.86541 0.79445 0.80846 0.81218 1.19779 1.20984 1.20958 1.22377 0.94375 0.94868 0.89008 0.91534 0.92316 0.92426 0.87549 0.92450 0.92259 0.91595 0.75855 0.91630 0.90889 0.92113 0.92094 0.92915 0.93098 0.92654 0.85732 0.93643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.18 37.16 0.34 -1.40 16 2 C -0.02 -0.33 3.38 -91.78 -0.31 -0.64 16 3 C -0.14 -1.73 9.18 37.16 0.34 -1.39 16 4 C 0.07 1.10 6.09 -79.77 -0.49 0.62 16 5 N -0.36 -5.19 12.01 34.78 0.42 -4.77 16 6 O 0.09 1.16 11.06 18.66 0.21 1.37 16 7 C -0.03 -0.31 9.98 30.42 0.30 -0.01 16 8 C -0.23 -3.66 5.66 -102.89 -0.58 -4.25 16 9 C 0.58 11.49 7.60 -12.54 -0.10 11.39 16 10 O -0.52 -12.47 15.60 5.27 0.08 -12.39 16 11 N -0.60 -11.43 2.97 -173.78 -0.52 -11.94 16 12 C 0.10 1.40 5.54 -3.49 -0.02 1.38 16 13 C -0.13 -2.04 6.10 -26.39 -0.16 -2.20 16 14 C -0.11 -2.11 5.10 -26.69 -0.14 -2.25 16 15 C 0.04 0.95 2.25 -91.65 -0.21 0.75 16 16 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 17 C -0.52 -13.76 8.56 -34.44 -0.29 -14.05 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 20 N -0.88 -25.14 11.39 55.43 0.63 -24.51 16 21 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.11 2.63 5.41 -3.71 -0.02 2.61 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.11 1.78 7.14 -51.93 -0.37 1.41 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.23 1.73 7.13 -52.48 -0.37 1.36 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.88 4.59 -51.93 -0.24 0.64 16 36 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.12 3.41 5.11 -51.93 -0.27 3.15 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 339.09 15.07 5.11 5.11 Total: -1.00 -30.95 339.09 -6.80 -37.74 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.29 Total: 1.37 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -1.42 Total: -7.82 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: 0.53 Total: -41.22 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.29 Total: -11.02 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.95 -6.80 -37.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600094648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.828 kcal (2) G-P(sol) polarization free energy of solvation -30.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds