Wall clock time and date at job start Tue Mar 31 2020 06:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47132 * 2 1 4 4 C 1.50697 * 109.47028 * 120.00253 * 2 1 3 5 5 N 1.30008 * 127.33869 * 300.02396 * 4 2 1 6 6 O 1.20657 * 112.30735 * 179.97438 * 5 4 2 7 7 C 1.33491 * 113.15289 * 0.02562 * 6 5 4 8 8 C 1.37366 * 106.34322 * 359.73731 * 7 6 5 9 9 C 1.47392 * 128.56501 * 180.26243 * 8 7 6 10 10 O 1.21612 * 120.00163 * 216.03653 * 9 8 7 11 11 N 1.34774 * 120.00474 * 36.02843 * 9 8 7 12 12 C 1.46927 * 120.62716 * 5.53503 * 11 9 8 13 13 C 1.53621 * 108.54470 * 126.36394 * 12 11 9 14 14 C 1.53039 * 109.24387 * 54.85534 * 13 12 11 15 15 C 1.53041 * 109.53973 * 298.51172 * 14 13 12 16 16 H 1.09001 * 109.49662 * 301.41545 * 15 14 13 17 17 C 1.50700 * 109.50079 * 181.31533 * 15 14 13 18 18 H 1.07996 * 119.99826 * 0.15560 * 17 15 14 19 19 C 1.37875 * 119.99858 * 180.16660 * 17 15 14 20 20 N 1.31514 * 120.00367 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 119.99791 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47176 * 359.97438 * 21 19 17 23 23 H 1.48506 * 109.47161 * 119.99589 * 21 19 17 24 24 H 1.48504 * 109.47369 * 239.99400 * 21 19 17 25 25 C 1.46926 * 120.63657 * 185.80676 * 11 9 8 26 26 H 1.08998 * 109.47014 * 59.99545 * 1 2 3 27 27 H 1.08995 * 109.46960 * 299.99703 * 1 2 3 28 28 H 1.09000 * 109.47189 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46959 * 240.00112 * 2 1 3 30 30 H 1.09005 * 109.47108 * 60.00203 * 3 2 1 31 31 H 1.09006 * 109.47467 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47542 * 300.00131 * 3 2 1 33 33 H 1.08008 * 126.82676 * 180.02562 * 7 6 5 34 34 H 1.09004 * 109.58792 * 246.19632 * 12 11 9 35 35 H 1.09004 * 109.58780 * 6.62317 * 12 11 9 36 36 H 1.09007 * 109.63748 * 294.86800 * 13 12 11 37 37 H 1.08998 * 109.45892 * 174.74060 * 13 12 11 38 38 H 1.09001 * 109.46312 * 178.49261 * 14 13 12 39 39 H 1.09001 * 109.44834 * 58.52606 * 14 13 12 40 40 H 0.97003 * 120.00387 * 180.02562 * 20 19 17 41 41 H 1.09004 * 109.58387 * 353.38139 * 25 11 9 42 42 H 1.09000 * 109.58643 * 113.80209 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.8075 -0.3934 2.4710 6 8 2.3431 -1.1516 3.2418 7 6 3.0295 -2.1211 2.6328 8 6 2.8767 -1.9138 1.2834 9 6 3.4253 -2.7015 0.1649 10 8 3.7845 -2.1426 -0.8537 11 7 3.5292 -4.0410 0.2710 12 6 2.9898 -4.7430 1.4436 13 6 2.0456 -5.8528 0.9571 14 6 2.7932 -6.7558 -0.0267 15 6 3.2363 -5.9348 -1.2398 16 1 2.3630 -5.4894 -1.7164 17 6 3.9441 -6.8314 -2.2228 18 1 4.0637 -7.8825 -2.0056 19 6 4.4391 -6.3097 -3.3991 20 7 4.2931 -5.0297 -3.6637 21 14 5.3170 -7.4210 -4.6172 22 1 5.3497 -8.8078 -4.0874 23 1 4.5938 -7.4029 -5.9141 24 1 6.7060 -6.9354 -4.8182 25 6 4.1891 -4.8265 -0.7808 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 3.5894 -2.9138 3.1067 34 1 3.8079 -5.1804 2.0159 35 1 2.4386 -4.0404 2.0686 36 1 1.1834 -5.4083 0.4597 37 1 1.7095 -6.4432 1.8094 38 1 2.1345 -7.5603 -0.3538 39 1 3.6690 -7.1804 0.4640 40 1 4.6410 -4.6628 -4.4915 41 1 4.4296 -4.1788 -1.6239 42 1 5.1030 -5.2705 -0.3862 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600094648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:47 Heat of formation + Delta-G solvation = -7.809556 kcal Electronic energy + Delta-G solvation = -24300.414616 eV Core-core repulsion = 20861.494097 eV Total energy + Delta-G solvation = -3438.920519 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -45.97058 -40.96024 -38.39797 -37.25600 -35.46124 -33.96786 -33.12319 -32.65984 -31.42876 -28.16921 -27.41032 -26.80268 -24.90781 -24.43809 -23.49008 -21.65167 -21.07456 -20.26690 -18.80856 -18.69017 -18.19511 -17.61279 -16.96692 -16.46323 -16.16503 -15.77971 -15.54388 -15.20910 -14.86383 -14.66069 -14.36697 -14.32427 -14.27559 -13.81477 -13.49743 -13.18754 -12.91593 -12.87455 -12.66112 -12.36962 -12.36038 -12.28914 -12.22782 -11.90927 -11.83102 -11.63783 -11.23490 -10.97066 -10.94949 -10.87924 -10.58086 -10.50794 -9.45489 -8.10742 -6.28002 0.16712 0.74436 1.39910 1.42184 1.53691 1.76074 2.04092 2.33860 2.43191 2.95100 3.17683 3.25532 3.67945 3.93036 4.00089 4.07217 4.08388 4.11233 4.15471 4.33653 4.53275 4.58027 4.66530 4.66674 4.72941 4.78044 4.80664 4.84586 4.88088 5.03454 5.09606 5.20294 5.24362 5.26936 5.27572 5.35934 5.53590 5.62532 5.90003 6.00035 6.32610 6.56987 6.85428 7.17635 7.22317 7.42738 8.92635 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.020148 B = 0.004654 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.350369 B = 6014.463956 C = 6815.579437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.029 4.029 3 C -0.133 4.133 4 C 0.059 3.941 5 N -0.363 5.363 6 O 0.107 5.893 7 C 0.022 3.978 8 C -0.271 4.271 9 C 0.577 3.423 10 O -0.580 6.580 11 N -0.599 5.599 12 C 0.092 3.908 13 C -0.127 4.127 14 C -0.105 4.105 15 C 0.038 3.962 16 H -0.018 1.018 17 C -0.534 4.534 18 H 0.063 0.937 19 C 0.010 3.990 20 N -0.915 5.915 21 Si 0.956 3.044 22 H -0.259 1.259 23 H -0.285 1.285 24 H -0.282 1.282 25 C 0.127 3.873 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.274 0.726 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.042 0.958 37 H 0.108 0.892 38 H 0.049 0.951 39 H 0.064 0.936 40 H 0.259 0.741 41 H 0.077 0.923 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.867 5.202 15.983 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.049 4.049 3 C -0.190 4.190 4 C -0.103 4.103 5 N -0.068 5.068 6 O 0.047 5.953 7 C -0.060 4.060 8 C -0.279 4.279 9 C 0.366 3.634 10 O -0.461 6.461 11 N -0.330 5.330 12 C -0.030 4.030 13 C -0.165 4.165 14 C -0.143 4.143 15 C 0.018 3.982 16 H 0.000 1.000 17 C -0.572 4.572 18 H 0.082 0.918 19 C -0.189 4.189 20 N -0.554 5.554 21 Si 0.782 3.218 22 H -0.183 1.183 23 H -0.211 1.211 24 H -0.208 1.208 25 C 0.005 3.995 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.290 0.710 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.061 0.939 37 H 0.126 0.874 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.326 6.559 15.955 18.054 hybrid contribution 1.015 -1.030 -2.071 2.526 sum -4.310 5.530 13.884 15.554 Atomic orbital electron populations 1.21774 0.91915 1.02021 1.03532 1.19717 0.97386 0.96505 0.91244 1.21736 1.00618 0.93255 1.03420 1.24911 0.97310 0.93779 0.94286 1.73552 1.17655 1.14305 1.01281 1.84544 1.47943 1.29556 1.33287 1.27149 0.94929 0.93703 0.90202 1.22253 1.09368 1.01065 0.95184 1.17433 0.78136 0.82222 0.85636 1.90789 1.51769 1.71418 1.32129 1.48372 1.56422 1.05088 1.23086 1.22439 0.98412 0.95297 0.86819 1.21985 0.97474 0.97096 0.99962 1.21522 0.99515 0.97615 0.95633 1.18912 0.93390 0.92718 0.93146 1.00022 1.21545 1.36962 0.95432 1.03286 0.91831 1.25883 0.96845 0.96163 1.00022 1.70097 1.46626 1.13434 1.25241 0.85530 0.78027 0.79547 0.78711 1.18323 1.21101 1.20842 1.21775 0.94612 0.94064 0.89079 0.90061 0.91243 0.93463 0.91111 0.91353 0.93691 0.90022 0.71023 0.88073 0.87755 0.93943 0.87397 0.93170 0.91737 0.93180 0.90517 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 9.18 71.98 0.66 -2.60 16 2 C -0.03 -0.86 3.38 -11.54 -0.04 -0.89 16 3 C -0.13 -3.30 9.18 71.98 0.66 -2.64 16 4 C 0.06 1.78 6.09 45.16 0.28 2.06 16 5 N -0.36 -9.65 12.01 -44.78 -0.54 -10.19 16 6 O 0.11 2.30 11.06 77.01 0.85 3.16 16 7 C 0.02 0.42 9.98 67.61 0.67 1.10 16 8 C -0.27 -8.27 5.66 -18.74 -0.11 -8.38 16 9 C 0.58 23.45 7.60 86.65 0.66 24.11 16 10 O -0.58 -29.87 15.60 -4.07 -0.06 -29.94 16 11 N -0.60 -22.82 2.97 -821.96 -2.44 -25.26 16 12 C 0.09 2.30 5.54 86.51 0.48 2.78 16 13 C -0.13 -3.52 6.10 30.82 0.19 -3.34 16 14 C -0.11 -3.86 5.10 30.62 0.16 -3.70 16 15 C 0.04 1.85 2.25 -11.46 -0.03 1.83 16 16 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 17 C -0.53 -28.83 8.56 25.60 0.22 -28.61 16 18 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 19 C 0.01 0.57 5.30 84.65 0.45 1.02 16 20 N -0.92 -55.32 11.39 21.45 0.24 -55.07 16 21 Si 0.96 43.77 29.54 68.60 2.03 45.79 16 22 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 25 C 0.13 6.09 5.41 86.36 0.47 6.56 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 2.59 7.14 -2.38 -0.02 2.57 16 30 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.27 2.37 7.13 -2.91 -0.02 2.35 16 34 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.10 1.98 4.59 -2.38 -0.01 1.96 16 36 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.26 15.11 8.31 -92.71 -0.77 14.33 16 41 H 0.08 4.50 5.11 -2.38 -0.01 4.49 16 42 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -74.75 339.09 5.81 -68.94 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 1.01 Total: 13.28 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: 4.72 Total: -10.71 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -2.73 Total: -90.53 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: 0.79 Total: -26.78 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -74.75 5.81 -68.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600094648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.130 kcal (2) G-P(sol) polarization free energy of solvation -74.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds