Wall clock time and date at job start Tue Mar 31 2020 07:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47030 * 2 1 4 4 C 1.50695 * 109.47380 * 239.99608 * 2 1 3 5 5 H 1.08002 * 120.00407 * 239.99779 * 4 2 1 6 6 C 1.37887 * 119.99924 * 60.00082 * 4 2 1 7 7 N 1.31509 * 119.99616 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00170 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46991 * 89.99598 * 8 6 4 10 10 H 1.48491 * 109.46955 * 209.99731 * 8 6 4 11 11 H 1.48494 * 109.46991 * 329.99910 * 8 6 4 12 12 C 1.53000 * 109.47173 * 119.99738 * 2 1 3 13 13 N 1.46905 * 109.47234 * 300.00189 * 12 2 1 14 14 C 1.46902 * 110.99800 * 180.02562 * 13 12 2 15 15 C 1.50706 * 109.46577 * 179.97438 * 14 13 12 16 16 C 1.38193 * 119.53852 * 95.00036 * 15 14 13 17 17 C 1.38951 * 118.92019 * 179.97438 * 16 15 14 18 18 C 1.39319 * 118.55966 * 359.95599 * 17 16 15 19 19 C 1.38405 * 119.04588 * 0.10625 * 18 17 16 20 20 N 1.31890 * 119.53750 * 274.72218 * 15 14 13 21 21 O 1.35943 * 120.73336 * 180.19234 * 18 17 16 22 22 C 1.43241 * 116.54789 * 342.76287 * 21 18 17 23 23 C 1.53451 * 108.36405 * 46.19346 * 22 21 18 24 24 O 1.35633 * 120.40367 * 179.83342 * 17 16 15 25 25 H 1.09001 * 109.47309 * 300.00109 * 1 2 3 26 26 H 1.08992 * 109.47369 * 60.00772 * 1 2 3 27 27 H 1.09001 * 109.47106 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47218 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46952 * 299.99695 * 3 2 1 30 30 H 1.09001 * 109.47163 * 59.99802 * 3 2 1 31 31 H 0.96997 * 120.00192 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.47089 * 180.02562 * 12 2 1 33 33 H 1.09001 * 109.47170 * 59.99959 * 12 2 1 34 34 H 1.00896 * 110.99866 * 56.04214 * 13 12 2 35 35 H 1.09000 * 109.46894 * 60.00165 * 14 13 12 36 36 H 1.09000 * 109.47263 * 299.99731 * 14 13 12 37 37 H 1.08010 * 120.53940 * 359.96134 * 16 15 14 38 38 H 1.08001 * 119.71778 * 179.91011 * 19 18 17 39 39 H 1.09003 * 109.68921 * 286.47783 * 22 21 18 40 40 H 1.09003 * 109.71742 * 165.93175 * 22 21 18 41 41 H 1.08998 * 109.69719 * 180.58477 * 23 22 21 42 42 H 1.08996 * 109.72223 * 60.01850 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8295 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 1.3428 -2.1619 -4.4117 10 1 2.4865 -0.1416 -5.1122 11 1 3.6293 -1.7584 -3.7121 12 6 2.0400 -0.7212 1.2493 13 7 1.5503 -0.0287 2.4487 14 6 2.0219 -0.6944 3.6704 15 6 1.5012 0.0430 4.8772 16 6 0.3363 -0.3837 5.4861 17 6 -0.1318 0.3053 6.5982 18 6 0.5949 1.4019 7.0570 19 6 1.7519 1.7674 6.3911 20 7 2.1665 1.0831 5.3406 21 8 0.1793 2.1054 8.1434 22 6 -1.1840 1.9212 8.5423 23 6 -1.4891 0.4174 8.5414 24 8 -1.2737 -0.0854 7.2172 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 0.7081 1.1607 -3.4844 32 1 3.1300 -0.7208 1.2495 33 1 1.6766 -1.7489 1.2493 34 1 0.5438 0.0414 2.4402 35 1 3.1117 -0.6938 3.6869 36 1 1.6588 -1.7221 3.6874 37 1 -0.2015 -1.2387 5.1037 38 1 2.3228 2.6166 6.7365 39 1 -1.8441 2.4302 7.8398 40 1 -1.3320 2.3254 9.5438 41 1 -2.5265 0.2528 8.8325 42 1 -0.8262 -0.0928 9.2402 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602690280.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:34 Heat of formation + Delta-G solvation = -55.546171 kcal Electronic energy + Delta-G solvation = -23193.679448 eV Core-core repulsion = 19752.688914 eV Total energy + Delta-G solvation = -3440.990534 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.55466 -40.11640 -38.55544 -38.40210 -35.71129 -33.31553 -33.05148 -31.73769 -30.02981 -27.62782 -27.48564 -27.20691 -25.60487 -24.77875 -24.12152 -21.75693 -20.33613 -19.78337 -18.86799 -18.47971 -17.80965 -16.90058 -16.69831 -16.47961 -16.15482 -15.84235 -15.66451 -15.49864 -15.35197 -15.11465 -14.64086 -14.49374 -14.00535 -13.91354 -13.58179 -13.11098 -13.01607 -12.99284 -12.69083 -12.52088 -12.38749 -12.09011 -12.08281 -12.04197 -11.75002 -11.28731 -10.96501 -10.62148 -10.57449 -10.32120 -10.12546 -9.45419 -9.12952 -7.94137 -6.11080 -0.04304 0.13554 1.44197 1.46323 1.54984 1.86252 2.12727 2.48246 2.60733 3.08069 3.28047 3.29779 3.52595 3.62161 3.87014 3.90410 4.01869 4.10847 4.32527 4.45729 4.54656 4.56331 4.60391 4.68359 4.70897 4.79031 4.89333 4.91011 5.06156 5.19862 5.25940 5.31733 5.45606 5.56365 5.70340 5.72634 5.78997 6.15521 6.17292 6.25262 6.35665 6.50347 6.62701 6.98688 6.99491 7.56454 9.04260 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.035941 B = 0.002883 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.860861 B = 9710.262622 C = 9812.547327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.060 3.940 3 C -0.105 4.105 4 C -0.525 4.525 5 H 0.048 0.952 6 C 0.021 3.979 7 N -0.905 5.905 8 Si 0.946 3.054 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.091 3.909 13 N -0.683 5.683 14 C 0.113 3.887 15 C 0.132 3.868 16 C -0.167 4.167 17 C 0.087 3.913 18 C -0.009 4.009 19 C 0.104 3.896 20 N -0.476 5.476 21 O -0.310 6.310 22 C 0.012 3.988 23 C 0.012 3.988 24 O -0.315 6.315 25 H 0.030 0.970 26 H 0.055 0.945 27 H 0.020 0.980 28 H 0.010 0.990 29 H 0.048 0.952 30 H 0.029 0.971 31 H 0.257 0.743 32 H 0.052 0.948 33 H 0.019 0.981 34 H 0.338 0.662 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.156 0.844 38 H 0.184 0.816 39 H 0.079 0.921 40 H 0.162 0.838 41 H 0.159 0.841 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.900 -0.387 24.985 25.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.060 3.940 3 C -0.163 4.163 4 C -0.564 4.564 5 H 0.066 0.934 6 C -0.178 4.178 7 N -0.544 5.544 8 Si 0.773 3.227 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.038 4.038 13 N -0.315 5.315 14 C -0.016 4.016 15 C -0.006 4.006 16 C -0.188 4.188 17 C 0.034 3.966 18 C -0.057 4.057 19 C -0.055 4.055 20 N -0.188 5.188 21 O -0.224 6.224 22 C -0.063 4.063 23 C -0.062 4.062 24 O -0.227 6.227 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.040 0.960 28 H 0.029 0.971 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.037 0.963 34 H 0.157 0.843 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.174 0.826 38 H 0.201 0.799 39 H 0.097 0.903 40 H 0.179 0.821 41 H 0.176 0.824 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.786 0.427 24.506 24.972 hybrid contribution -1.135 -1.299 -0.585 1.822 sum -5.921 -0.873 23.921 24.658 Atomic orbital electron populations 1.21660 0.98183 0.98210 0.99791 1.18137 0.92398 0.92705 0.90808 1.21469 0.97087 0.98647 0.99091 1.21450 1.31181 1.11919 0.91822 0.93380 1.25560 0.95377 0.95622 1.01253 1.69976 1.37545 1.23683 1.23237 0.85750 0.78756 0.78375 0.79858 1.20421 1.21265 1.19704 1.21856 0.98573 0.94170 0.89199 1.60449 1.16287 1.54109 1.00694 1.20746 1.01043 0.94179 0.85610 1.20990 0.91168 0.92639 0.95791 1.21467 0.97608 1.02933 0.96758 1.19132 0.88781 0.93292 0.95421 1.20015 0.98812 0.93675 0.93166 1.22556 0.93296 0.99500 0.90099 1.67599 1.33152 1.06798 1.11289 1.86290 1.30415 1.63810 1.41890 1.24038 0.80313 0.96768 1.05165 1.24109 1.06927 0.94321 0.80861 1.86247 1.35642 1.69506 1.31353 0.95157 0.92645 0.96038 0.97082 0.93342 0.95239 0.93382 0.92978 0.96303 0.84300 0.89841 0.92112 0.82588 0.79933 0.90276 0.82098 0.82381 0.89478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 7.92 71.98 0.57 -5.18 16 2 C 0.06 2.95 0.57 -52.93 -0.03 2.92 16 3 C -0.11 -5.33 8.09 71.98 0.58 -4.75 16 4 C -0.52 -28.58 8.01 25.60 0.21 -28.38 16 5 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16 6 C 0.02 1.13 5.15 84.66 0.44 1.57 16 7 N -0.91 -51.32 9.35 21.45 0.20 -51.12 16 8 Si 0.95 43.73 29.54 68.60 2.03 45.76 16 9 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 10 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 12 C 0.09 3.77 4.59 86.30 0.40 4.17 16 13 N -0.68 -24.79 5.70 -517.90 -2.95 -27.74 16 14 C 0.11 3.41 5.99 85.56 0.51 3.92 16 15 C 0.13 3.83 6.29 42.54 0.27 4.10 16 16 C -0.17 -4.28 9.68 22.43 0.22 -4.06 16 17 C 0.09 2.12 6.52 22.70 0.15 2.27 16 18 C -0.01 -0.21 6.51 22.57 0.15 -0.06 16 19 C 0.10 2.67 11.14 84.70 0.94 3.62 16 20 N -0.48 -14.59 10.26 -183.60 -1.88 -16.47 16 21 O -0.31 -5.99 10.45 -80.97 -0.85 -6.84 16 22 C 0.01 0.13 7.25 72.13 0.52 0.65 16 23 C 0.01 0.13 7.26 72.13 0.52 0.65 16 24 O -0.31 -6.38 10.44 -77.51 -0.81 -7.19 16 25 H 0.03 1.28 6.57 -2.39 -0.02 1.26 16 26 H 0.05 2.96 6.07 -2.39 -0.01 2.95 16 27 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.05 2.69 6.07 -2.39 -0.01 2.67 16 30 H 0.03 1.39 7.60 -2.39 -0.02 1.37 16 31 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 32 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.34 12.08 6.76 -89.70 -0.61 11.47 16 35 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.06 1.58 8.04 -2.39 -0.02 1.56 16 37 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 38 H 0.18 3.79 8.06 -2.91 -0.02 3.77 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.16 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.16 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -65.81 338.59 1.59 -64.22 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.42 Total: 17.95 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 5.44 Total: -18.56 kcal Atomic # 7 Polarization: -90.70 SS G_CDS: -4.64 Total: -95.33 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -1.66 Total: -14.03 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -65.81 1.59 -64.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602690280.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.669 kcal (2) G-P(sol) polarization free energy of solvation -65.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds