Wall clock time and date at job start Tue Mar 31 2020 07:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47593 * 2 1 4 4 C 1.53005 * 109.47161 * 120.00168 * 2 1 3 5 5 N 1.46499 * 109.46957 * 64.99766 * 4 2 1 6 6 C 1.46498 * 119.99939 * 264.26379 * 5 4 2 7 7 C 1.50704 * 109.46821 * 269.99865 * 6 5 4 8 8 H 1.08001 * 120.00316 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99809 * 179.97438 * 7 6 5 10 10 N 1.31507 * 119.99949 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 119.99903 * 0.02562 * 9 7 6 12 12 H 1.48509 * 109.46910 * 90.00087 * 11 9 7 13 13 H 1.48495 * 109.47365 * 209.99788 * 11 9 7 14 14 H 1.48499 * 109.47274 * 330.00396 * 11 9 7 15 15 C 1.34784 * 120.00213 * 84.26609 * 5 4 2 16 16 O 1.21599 * 119.99990 * 185.32884 * 15 5 4 17 17 C 1.47457 * 119.99846 * 5.05079 * 15 5 4 18 18 C 1.41596 * 120.26024 * 256.73899 * 17 15 5 19 19 C 1.35967 * 119.01688 * 179.97438 * 18 17 15 20 20 C 1.40768 * 119.49410 * 0.02562 * 19 18 17 21 21 O 1.21960 * 119.74539 * 179.97438 * 20 19 18 22 22 N 1.34537 * 120.50478 * 0.02562 * 20 19 18 23 23 C 1.46495 * 119.47899 * 179.97438 * 22 20 19 24 24 C 1.34608 * 121.04248 * 359.68857 * 22 20 19 25 25 H 1.09009 * 109.46823 * 299.99770 * 1 2 3 26 26 H 1.08998 * 109.47378 * 59.99754 * 1 2 3 27 27 H 1.09001 * 109.47241 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47096 * 239.99858 * 2 1 3 29 29 H 1.08996 * 109.47609 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46959 * 300.00502 * 3 2 1 31 31 H 1.09004 * 109.47015 * 59.99809 * 3 2 1 32 32 H 1.09001 * 109.47185 * 304.99731 * 4 2 1 33 33 H 1.08998 * 109.46691 * 184.99598 * 4 2 1 34 34 H 1.08989 * 109.47270 * 30.00025 * 6 5 4 35 35 H 1.09005 * 109.47346 * 150.00659 * 6 5 4 36 36 H 0.96996 * 120.00211 * 180.02562 * 10 9 7 37 37 H 1.08001 * 120.49407 * 0.02562 * 18 17 15 38 38 H 1.07996 * 120.25603 * 180.02562 * 19 18 17 39 39 H 1.08997 * 109.47147 * 0.02562 * 23 22 20 40 40 H 1.09007 * 109.47027 * 120.00307 * 23 22 20 41 41 H 1.08997 * 109.47362 * 239.99636 * 23 22 20 42 42 H 1.07998 * 119.77151 * 180.30240 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6523 -2.1329 1.1905 6 6 0.4366 -2.5875 1.8698 7 6 0.7732 -2.9992 3.2799 8 1 1.7908 -2.9289 3.6347 9 6 -0.2183 -3.4648 4.1174 10 7 0.0753 -3.8236 5.3481 11 14 -1.9785 -3.5858 3.5040 12 1 -2.2020 -4.9250 2.9024 13 1 -2.9135 -3.3917 4.6412 14 1 -2.2193 -2.5370 2.4807 15 6 2.4142 -3.0133 0.5116 16 8 2.0435 -4.1640 0.3807 17 6 3.6945 -2.5796 -0.0778 18 6 3.7939 -2.3384 -1.4695 19 6 4.9865 -1.9389 -1.9860 20 6 6.0922 -1.7747 -1.1304 21 8 7.1642 -1.4170 -1.5889 22 7 5.9757 -2.0104 0.1890 23 6 7.1411 -1.8330 1.0587 24 6 4.8037 -2.4012 0.7235 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6054 -0.2618 2.1370 33 1 3.1263 -0.6444 1.2951 34 1 -0.2918 -1.7771 1.8921 35 1 0.0171 -3.4385 1.3332 36 1 -0.6220 -4.1515 5.9371 37 1 2.9351 -2.4690 -2.1111 38 1 5.0848 -1.7489 -3.0446 39 1 7.9944 -1.5114 0.4617 40 1 6.9202 -1.0774 1.8127 41 1 7.3757 -2.7778 1.5491 42 1 4.7321 -2.5801 1.7861 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751379401.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:35 Heat of formation + Delta-G solvation = -38.520153 kcal Electronic energy + Delta-G solvation = -24278.131480 eV Core-core repulsion = 20837.879249 eV Total energy + Delta-G solvation = -3440.252231 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.49588 -39.35540 -36.84444 -36.45015 -34.68185 -33.69813 -32.37548 -30.36170 -28.37995 -27.77711 -27.00702 -25.70761 -24.34353 -23.31000 -22.09421 -20.38860 -19.20686 -17.62555 -17.32732 -16.96961 -16.64412 -16.28591 -15.75091 -15.59398 -14.63715 -14.52309 -14.30630 -14.04958 -13.58974 -13.43289 -13.39360 -12.98561 -12.71475 -12.57054 -12.35174 -12.18817 -11.98425 -11.91477 -11.80289 -11.45773 -11.18880 -11.04827 -10.71261 -10.65016 -10.42856 -10.20175 -10.14380 -10.06930 -9.62759 -9.29113 -8.65307 -8.00572 -7.78876 -6.16080 -4.15321 0.74030 1.61134 2.45021 3.16179 3.24634 3.30461 3.32951 3.48973 3.75870 4.33637 4.49398 4.55224 4.79976 4.87650 4.99882 5.02698 5.03796 5.06692 5.18144 5.25689 5.27955 5.43920 5.60861 5.72482 5.76694 5.87009 5.89508 5.98071 6.01591 6.03793 6.13103 6.18527 6.32811 6.40900 6.48230 6.66667 6.87213 6.90015 7.24261 7.53507 7.88647 8.11430 8.37665 8.78658 8.86588 9.44274 10.97062 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017726 B = 0.005110 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.180446 B = 5478.139968 C = 6139.936057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.142 4.142 4 C 0.118 3.882 5 N -0.581 5.581 6 C 0.214 3.786 7 C -0.532 4.532 8 H 0.074 0.926 9 C 0.074 3.926 10 N -0.896 5.896 11 Si 0.874 3.126 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.567 3.433 16 O -0.530 6.530 17 C -0.218 4.218 18 C 0.017 3.983 19 C -0.248 4.248 20 C 0.513 3.487 21 O -0.558 6.558 22 N -0.489 5.489 23 C 0.049 3.951 24 C 0.166 3.834 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.036 0.964 35 H 0.038 0.962 36 H 0.265 0.735 37 H 0.137 0.863 38 H 0.151 0.849 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.272 9.130 -9.852 15.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.134 4.134 3 C -0.200 4.200 4 C -0.006 4.006 5 N -0.311 5.311 6 C 0.093 3.907 7 C -0.570 4.570 8 H 0.092 0.908 9 C -0.128 4.128 10 N -0.534 5.534 11 Si 0.700 3.300 12 H -0.198 1.198 13 H -0.211 1.211 14 H -0.189 1.189 15 C 0.352 3.648 16 O -0.406 6.406 17 C -0.227 4.227 18 C -0.005 4.005 19 C -0.269 4.269 20 C 0.316 3.684 21 O -0.442 6.442 22 N -0.198 5.198 23 C -0.092 4.092 24 C 0.036 3.964 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.155 0.845 38 H 0.169 0.831 39 H 0.123 0.877 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 7.705 8.680 -9.994 15.316 hybrid contribution -1.028 -0.161 0.014 1.040 sum 6.678 8.519 -9.980 14.723 Atomic orbital electron populations 1.21884 0.94871 1.02516 1.01246 1.21587 0.96745 0.96080 0.98941 1.21755 1.00648 0.95798 1.01833 1.21554 0.99352 0.81607 0.98128 1.47896 1.26073 1.07084 1.50026 1.19784 0.82125 0.95749 0.93011 1.21305 0.97147 1.43952 0.94601 0.90781 1.24830 0.98861 0.94467 0.94669 1.69879 1.33660 1.43623 1.06288 0.86886 0.84910 0.79425 0.78732 1.19847 1.21065 1.18935 1.17636 0.83134 0.85339 0.78663 1.90794 1.72189 1.18384 1.59275 1.19677 0.95356 1.13233 0.94420 1.21343 0.97729 0.88401 0.93041 1.21927 0.92443 1.11420 1.01127 1.17203 0.90489 0.79770 0.80890 1.90901 1.29157 1.50209 1.73900 1.45047 1.10759 1.53903 1.10095 1.22291 0.88661 1.03608 0.94672 1.22143 0.83718 0.90837 0.99697 0.92481 0.93304 0.91920 0.91374 0.92951 0.92729 0.92438 0.89493 0.91814 0.94624 0.94429 0.92496 0.84488 0.83141 0.87729 0.89864 0.89936 0.81156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.34 37.15 0.31 -1.62 16 2 C -0.11 -1.40 3.08 -90.62 -0.28 -1.68 16 3 C -0.14 -1.44 9.19 37.15 0.34 -1.10 16 4 C 0.12 1.71 4.64 -4.04 -0.02 1.69 16 5 N -0.58 -10.81 2.19 -176.32 -0.39 -11.20 16 6 C 0.21 4.83 3.35 -5.19 -0.02 4.81 16 7 C -0.53 -14.28 9.94 -34.44 -0.34 -14.62 16 8 H 0.07 2.15 8.06 -52.49 -0.42 1.73 16 9 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 10 N -0.90 -26.50 13.96 55.43 0.77 -25.73 16 11 Si 0.87 20.68 27.47 -169.99 -4.67 16.01 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 15 C 0.57 10.69 7.03 -12.50 -0.09 10.61 16 16 O -0.53 -12.39 16.66 5.28 0.09 -12.30 16 17 C -0.22 -3.17 4.15 -104.95 -0.44 -3.60 16 18 C 0.02 0.21 8.99 -39.12 -0.35 -0.14 16 19 C -0.25 -3.08 9.97 -39.44 -0.39 -3.48 16 20 C 0.51 7.21 7.40 -15.41 -0.11 7.09 16 21 O -0.56 -9.33 16.33 4.96 0.08 -9.25 16 22 N -0.49 -5.83 2.95 -126.73 -0.37 -6.20 16 23 C 0.05 0.43 10.55 59.84 0.63 1.06 16 24 C 0.17 2.08 8.96 -16.42 -0.15 1.94 16 25 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.95 6.34 -51.93 -0.33 0.62 16 28 H 0.07 0.84 7.10 -51.93 -0.37 0.47 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 1.33 8.03 -51.93 -0.42 0.91 16 33 H 0.06 0.82 6.15 -51.93 -0.32 0.50 16 34 H 0.04 0.77 5.70 -51.94 -0.30 0.47 16 35 H 0.04 0.92 6.78 -51.93 -0.35 0.57 16 36 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 38 H 0.15 1.63 8.06 -52.49 -0.42 1.20 16 39 H 0.10 1.00 6.83 -51.93 -0.35 0.65 16 40 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.17 1.93 8.05 -52.49 -0.42 1.51 16 LS Contribution 345.81 15.07 5.21 5.21 Total: -1.00 -34.06 345.81 -6.53 -40.59 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -6.25 Total: -0.06 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -1.00 Total: 2.93 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.01 Total: -43.13 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: 0.17 Total: -21.55 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.67 Total: 16.01 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.06 -6.53 -40.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751379401.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.069 kcal (2) G-P(sol) polarization free energy of solvation -34.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds