Wall clock time and date at job start Tue Mar 31 2020 07:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47593 * 2 1 4 4 C 1.53005 * 109.47161 * 120.00168 * 2 1 3 5 5 N 1.46499 * 109.46957 * 64.99766 * 4 2 1 6 6 C 1.46498 * 119.99939 * 264.26379 * 5 4 2 7 7 C 1.50704 * 109.46821 * 269.99865 * 6 5 4 8 8 H 1.08001 * 120.00316 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99809 * 179.97438 * 7 6 5 10 10 N 1.31507 * 119.99949 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 119.99903 * 0.02562 * 9 7 6 12 12 H 1.48509 * 109.46910 * 90.00087 * 11 9 7 13 13 H 1.48495 * 109.47365 * 209.99788 * 11 9 7 14 14 H 1.48499 * 109.47274 * 330.00396 * 11 9 7 15 15 C 1.34784 * 120.00213 * 84.26609 * 5 4 2 16 16 O 1.21599 * 119.99990 * 185.32884 * 15 5 4 17 17 C 1.47457 * 119.99846 * 5.05079 * 15 5 4 18 18 C 1.41596 * 120.26024 * 256.73899 * 17 15 5 19 19 C 1.35967 * 119.01688 * 179.97438 * 18 17 15 20 20 C 1.40768 * 119.49410 * 0.02562 * 19 18 17 21 21 O 1.21960 * 119.74539 * 179.97438 * 20 19 18 22 22 N 1.34537 * 120.50478 * 0.02562 * 20 19 18 23 23 C 1.46495 * 119.47899 * 179.97438 * 22 20 19 24 24 C 1.34608 * 121.04248 * 359.68857 * 22 20 19 25 25 H 1.09009 * 109.46823 * 299.99770 * 1 2 3 26 26 H 1.08998 * 109.47378 * 59.99754 * 1 2 3 27 27 H 1.09001 * 109.47241 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47096 * 239.99858 * 2 1 3 29 29 H 1.08996 * 109.47609 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46959 * 300.00502 * 3 2 1 31 31 H 1.09004 * 109.47015 * 59.99809 * 3 2 1 32 32 H 1.09001 * 109.47185 * 304.99731 * 4 2 1 33 33 H 1.08998 * 109.46691 * 184.99598 * 4 2 1 34 34 H 1.08989 * 109.47270 * 30.00025 * 6 5 4 35 35 H 1.09005 * 109.47346 * 150.00659 * 6 5 4 36 36 H 0.96996 * 120.00211 * 180.02562 * 10 9 7 37 37 H 1.08001 * 120.49407 * 0.02562 * 18 17 15 38 38 H 1.07996 * 120.25603 * 180.02562 * 19 18 17 39 39 H 1.08997 * 109.47147 * 0.02562 * 23 22 20 40 40 H 1.09007 * 109.47027 * 120.00307 * 23 22 20 41 41 H 1.08997 * 109.47362 * 239.99636 * 23 22 20 42 42 H 1.07998 * 119.77151 * 180.30240 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6523 -2.1329 1.1905 6 6 0.4366 -2.5875 1.8698 7 6 0.7732 -2.9992 3.2799 8 1 1.7908 -2.9289 3.6347 9 6 -0.2183 -3.4648 4.1174 10 7 0.0753 -3.8236 5.3481 11 14 -1.9785 -3.5858 3.5040 12 1 -2.2020 -4.9250 2.9024 13 1 -2.9135 -3.3917 4.6412 14 1 -2.2193 -2.5370 2.4807 15 6 2.4142 -3.0133 0.5116 16 8 2.0435 -4.1640 0.3807 17 6 3.6945 -2.5796 -0.0778 18 6 3.7939 -2.3384 -1.4695 19 6 4.9865 -1.9389 -1.9860 20 6 6.0922 -1.7747 -1.1304 21 8 7.1642 -1.4170 -1.5889 22 7 5.9757 -2.0104 0.1890 23 6 7.1411 -1.8330 1.0587 24 6 4.8037 -2.4012 0.7235 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9562 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6054 -0.2618 2.1370 33 1 3.1263 -0.6444 1.2951 34 1 -0.2918 -1.7771 1.8921 35 1 0.0171 -3.4385 1.3332 36 1 -0.6220 -4.1515 5.9371 37 1 2.9351 -2.4690 -2.1111 38 1 5.0848 -1.7489 -3.0446 39 1 7.9944 -1.5114 0.4617 40 1 6.9202 -1.0774 1.8127 41 1 7.3757 -2.7778 1.5491 42 1 4.7321 -2.5801 1.7861 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751379401.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:34 Heat of formation + Delta-G solvation = -60.033128 kcal Electronic energy + Delta-G solvation = -24279.064353 eV Core-core repulsion = 20837.879249 eV Total energy + Delta-G solvation = -3441.185103 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.56589 -40.78786 -37.99727 -37.77294 -35.73834 -35.26840 -34.17860 -31.65664 -29.94236 -28.73139 -27.95994 -26.97329 -25.62159 -24.56603 -23.53735 -21.53673 -20.48558 -19.11722 -18.65409 -18.49022 -17.80716 -17.55505 -17.01804 -16.69206 -16.29448 -15.73704 -15.50730 -15.26635 -14.99721 -14.63629 -14.42060 -14.30686 -14.09355 -13.77026 -13.56826 -13.45529 -13.16862 -13.08000 -12.96425 -12.76600 -12.65214 -12.42583 -12.16986 -11.95940 -11.74059 -11.61569 -11.58364 -11.17683 -11.11843 -10.87559 -10.78469 -9.41668 -9.05555 -8.30774 -6.34619 -0.25866 0.49005 1.35547 1.39130 1.40616 1.46471 1.78114 2.24982 2.33559 2.52814 3.04535 3.44076 3.53896 3.78446 3.85136 3.96273 4.05601 4.11230 4.25248 4.40289 4.41675 4.60512 4.69857 4.74635 4.77928 4.84197 4.90244 4.93245 4.96191 4.97958 5.06795 5.09984 5.14663 5.28885 5.32264 5.43301 5.45810 5.52965 5.67833 5.85955 6.26159 6.63662 6.67163 6.82569 7.21864 7.35878 8.85405 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017726 B = 0.005110 C = 0.004559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.180446 B = 5478.139968 C = 6139.936057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.136 4.136 4 C 0.114 3.886 5 N -0.582 5.582 6 C 0.225 3.775 7 C -0.533 4.533 8 H 0.039 0.961 9 C 0.017 3.983 10 N -0.943 5.943 11 Si 0.936 3.064 12 H -0.278 1.278 13 H -0.278 1.278 14 H -0.237 1.237 15 C 0.568 3.432 16 O -0.584 6.584 17 C -0.232 4.232 18 C 0.023 3.977 19 C -0.243 4.243 20 C 0.505 3.495 21 O -0.588 6.588 22 N -0.482 5.482 23 C 0.042 3.958 24 C 0.183 3.817 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.037 0.963 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.019 0.981 36 H 0.267 0.733 37 H 0.151 0.849 38 H 0.168 0.832 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.100 0.900 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.202 10.875 -11.165 17.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.194 4.194 4 C -0.009 4.009 5 N -0.310 5.310 6 C 0.103 3.897 7 C -0.572 4.572 8 H 0.057 0.943 9 C -0.182 4.182 10 N -0.583 5.583 11 Si 0.759 3.241 12 H -0.203 1.203 13 H -0.204 1.204 14 H -0.160 1.160 15 C 0.356 3.644 16 O -0.464 6.464 17 C -0.241 4.241 18 C 0.001 3.999 19 C -0.264 4.264 20 C 0.309 3.691 21 O -0.475 6.475 22 N -0.189 5.189 23 C -0.098 4.098 24 C 0.051 3.949 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.037 0.963 36 H 0.076 0.924 37 H 0.169 0.831 38 H 0.186 0.814 39 H 0.115 0.885 40 H 0.126 0.874 41 H 0.118 0.882 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 7.662 10.484 -11.311 17.221 hybrid contribution -0.892 -0.704 0.490 1.238 sum 6.770 9.779 -10.821 16.080 Atomic orbital electron populations 1.21886 0.95351 1.01110 1.02248 1.21535 0.96298 0.97349 0.97548 1.21705 1.01041 0.93958 1.02696 1.21810 1.00591 0.79261 0.99204 1.47911 1.24950 1.08918 1.49246 1.19429 0.84162 0.95604 0.90534 1.21568 0.95567 1.43375 0.96647 0.94315 1.25708 1.03534 0.94192 0.94718 1.70019 1.35221 1.45245 1.07792 0.85889 0.79436 0.79828 0.78941 1.20346 1.20359 1.16045 1.18168 0.84041 0.84426 0.77790 1.90760 1.73695 1.20649 1.61333 1.19307 0.93816 1.15479 0.95454 1.21372 0.98364 0.87992 0.92145 1.22033 0.91644 1.10926 1.01822 1.17482 0.90422 0.79582 0.81582 1.90892 1.30265 1.51779 1.74526 1.45124 1.11216 1.52507 1.10063 1.22572 0.87167 1.05459 0.94594 1.22186 0.83342 0.89395 0.99951 0.92598 0.91258 0.94426 0.91060 0.92285 0.91345 0.92138 0.90313 0.89945 0.92921 0.96315 0.92386 0.83118 0.81438 0.88480 0.87397 0.88165 0.79999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 8.34 71.98 0.60 -2.95 16 2 C -0.11 -2.40 3.08 -10.80 -0.03 -2.43 16 3 C -0.14 -2.31 9.19 71.98 0.66 -1.64 16 4 C 0.11 3.14 4.64 86.38 0.40 3.54 16 5 N -0.58 -21.46 2.19 -830.00 -1.82 -23.28 16 6 C 0.22 10.17 3.35 85.63 0.29 10.45 16 7 C -0.53 -29.24 9.94 25.60 0.25 -28.98 16 8 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 9 C 0.02 0.95 5.47 84.66 0.46 1.41 16 10 N -0.94 -57.08 13.96 21.45 0.30 -56.78 16 11 Si 0.94 42.61 27.47 68.60 1.88 44.49 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 14 H -0.24 -9.66 6.54 99.48 0.65 -9.00 16 15 C 0.57 21.37 7.03 86.67 0.61 21.98 16 16 O -0.58 -27.87 16.66 -4.03 -0.07 -27.94 16 17 C -0.23 -6.44 4.15 -20.08 -0.08 -6.52 16 18 C 0.02 0.54 8.99 22.57 0.20 0.74 16 19 C -0.24 -5.52 9.97 22.36 0.22 -5.29 16 20 C 0.50 13.23 7.40 84.90 0.63 13.86 16 21 O -0.59 -18.85 16.33 -5.18 -0.08 -18.94 16 22 N -0.48 -10.48 2.95 -673.11 -1.99 -12.47 16 23 C 0.04 0.64 10.55 127.77 1.35 1.98 16 24 C 0.18 4.26 8.96 84.21 0.75 5.02 16 25 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.04 1.08 6.34 -2.39 -0.02 1.06 16 28 H 0.07 1.57 7.10 -2.38 -0.02 1.55 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.08 2.31 8.03 -2.39 -0.02 2.29 16 33 H 0.08 1.95 6.15 -2.39 -0.01 1.94 16 34 H 0.05 2.21 5.70 -2.39 -0.01 2.20 16 35 H 0.02 0.93 6.78 -2.38 -0.02 0.91 16 36 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 38 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 39 H 0.10 1.70 6.83 -2.39 -0.02 1.68 16 40 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.18 3.83 8.05 -2.91 -0.02 3.80 16 Total: -1.00 -75.79 345.81 5.50 -70.29 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.95 Total: 13.45 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 6.32 Total: 11.17 kcal Atomic # 7 Polarization: -89.03 SS G_CDS: -3.50 Total: -92.53 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -0.15 Total: -46.88 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 1.88 Total: 44.49 kcal Total: -75.79 5.50 -70.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751379401.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.261 kcal (2) G-P(sol) polarization free energy of solvation -75.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds