Wall clock time and date at job start Tue Mar 31 2020 07:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46961 * 2 1 4 4 C 1.52995 * 109.47348 * 120.00603 * 2 1 3 5 5 N 1.46501 * 109.47427 * 174.34247 * 4 2 1 6 6 C 1.46502 * 119.99571 * 277.13818 * 5 4 2 7 7 C 1.50701 * 109.47016 * 269.99246 * 6 5 4 8 8 H 1.08004 * 119.99926 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00301 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99942 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00213 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47319 * 90.00312 * 11 9 7 13 13 H 1.48512 * 109.46812 * 210.00036 * 11 9 7 14 14 H 1.48502 * 109.47029 * 329.99387 * 11 9 7 15 15 C 1.34770 * 120.00109 * 97.12922 * 5 4 2 16 16 O 1.21544 * 120.00285 * 184.79424 * 15 5 4 17 17 C 1.47884 * 120.00195 * 5.07264 * 15 5 4 18 18 C 1.36302 * 119.75542 * 60.42787 * 17 15 5 19 19 C 1.40401 * 119.90618 * 180.02562 * 18 17 15 20 20 C 1.36113 * 119.41750 * 359.97438 * 19 18 17 21 21 C 1.41247 * 119.50847 * 0.02562 * 20 19 18 22 22 O 1.21959 * 119.95309 * 180.02562 * 21 20 19 23 23 N 1.34668 * 120.08325 * 359.72596 * 21 20 19 24 24 C 1.46502 * 119.70042 * 180.29094 * 23 21 20 25 25 H 1.08997 * 109.47058 * 299.99507 * 1 2 3 26 26 H 1.09000 * 109.47501 * 59.99512 * 1 2 3 27 27 H 1.09004 * 109.47068 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46701 * 239.99990 * 2 1 3 29 29 H 1.08994 * 109.47231 * 305.44980 * 3 2 1 30 30 H 1.08998 * 109.46781 * 65.45520 * 3 2 1 31 31 H 1.09006 * 109.46863 * 185.45188 * 3 2 1 32 32 H 1.09002 * 109.47371 * 54.33918 * 4 2 1 33 33 H 1.09006 * 109.47164 * 294.33746 * 4 2 1 34 34 H 1.08995 * 109.47416 * 29.99659 * 6 5 4 35 35 H 1.09007 * 109.46891 * 149.99962 * 6 5 4 36 36 H 0.96994 * 119.99888 * 179.97438 * 10 9 7 37 37 H 1.07996 * 120.04601 * 0.02562 * 18 17 15 38 38 H 1.08003 * 120.29234 * 180.02562 * 19 18 17 39 39 H 1.08001 * 120.24650 * 179.97438 * 20 19 18 40 40 H 1.09000 * 109.47068 * 275.41163 * 24 23 21 41 41 H 1.09000 * 109.47169 * 35.41591 * 24 23 21 42 42 H 1.09008 * 109.46920 * 155.41661 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.4987 -0.8404 1.1830 6 6 4.1107 -1.9312 0.4202 7 6 4.3064 -3.1247 1.3192 8 1 4.0047 -3.0758 2.3551 9 6 4.8706 -4.2791 0.8194 10 7 5.2385 -4.3386 -0.4419 11 14 5.1126 -5.7588 1.9336 12 1 3.9051 -6.6214 1.8802 13 1 6.2949 -6.5334 1.4780 14 1 5.3304 -5.2978 3.3284 15 6 4.2775 0.0536 1.8237 16 8 5.4856 0.0074 1.6982 17 6 3.6627 1.0871 2.6844 18 6 2.9155 0.7136 3.7615 19 6 2.3299 1.6922 4.5804 20 6 2.5168 3.0082 4.2877 21 6 3.2956 3.3675 3.1654 22 8 3.4687 4.5443 2.8959 23 7 3.8523 2.4124 2.3963 24 6 4.6638 2.7947 1.2381 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.5991 1.9837 -0.8371 30 1 1.7585 1.9273 0.9348 31 1 3.1256 1.4440 -0.0976 32 1 1.5963 -1.7156 1.3012 33 1 1.7619 -0.1524 2.1363 34 1 3.4591 -2.2044 -0.4098 35 1 5.0762 -1.6063 0.0324 36 1 5.6358 -5.1507 -0.7934 37 1 2.7742 -0.3336 3.9846 38 1 1.7370 1.4032 5.4357 39 1 2.0722 3.7721 4.9083 40 1 4.0137 2.9707 0.3811 41 1 5.2178 3.7050 1.4671 42 1 5.3638 1.9924 1.0043 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756944928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:21 Heat of formation + Delta-G solvation = -36.453415 kcal Electronic energy + Delta-G solvation = -24805.963975 eV Core-core repulsion = 21365.801365 eV Total energy + Delta-G solvation = -3440.162610 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.54223 -39.28476 -36.66136 -36.56792 -34.68412 -33.78177 -32.50462 -30.38980 -27.79687 -27.65040 -26.97783 -25.99471 -24.56377 -22.90635 -22.47357 -20.40361 -19.30554 -17.36302 -17.33684 -17.05165 -16.52865 -16.18495 -15.63174 -15.23235 -14.68637 -14.64625 -14.48642 -14.27466 -13.75138 -13.47316 -13.00336 -12.77647 -12.64507 -12.34373 -12.26890 -12.20176 -11.97806 -11.83752 -11.64059 -11.33992 -11.11783 -11.00026 -10.82101 -10.68325 -10.49212 -10.28998 -10.15011 -10.05048 -9.77021 -9.35420 -8.55999 -8.05280 -7.85930 -6.17444 -4.23398 0.64881 1.75484 2.39739 3.09063 3.22639 3.30354 3.33631 3.50591 3.63306 4.31795 4.47997 4.61907 4.86613 4.95309 5.01561 5.10346 5.17697 5.23751 5.25665 5.33794 5.46210 5.55557 5.65115 5.73421 5.76455 5.86884 5.87776 5.96828 6.00957 6.04669 6.17369 6.18856 6.32907 6.37366 6.44756 6.78955 7.05246 7.18774 7.28874 7.76977 8.00291 8.02705 8.05462 8.50893 8.81055 9.42357 10.90694 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017955 B = 0.005264 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.094357 B = 5318.243142 C = 5737.879343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C -0.151 4.151 4 C 0.099 3.901 5 N -0.570 5.570 6 C 0.245 3.755 7 C -0.533 4.533 8 H 0.059 0.941 9 C 0.064 3.936 10 N -0.892 5.892 11 Si 0.899 3.101 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.545 3.455 16 O -0.520 6.520 17 C 0.149 3.851 18 C -0.206 4.206 19 C -0.015 4.015 20 C -0.240 4.240 21 C 0.514 3.486 22 O -0.556 6.556 23 N -0.476 5.476 24 C 0.041 3.959 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.047 0.953 36 H 0.265 0.735 37 H 0.152 0.848 38 H 0.140 0.860 39 H 0.149 0.851 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.838 9.384 4.577 14.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.134 4.134 3 C -0.209 4.209 4 C -0.024 4.024 5 N -0.300 5.300 6 C 0.127 3.873 7 C -0.571 4.571 8 H 0.078 0.922 9 C -0.139 4.139 10 N -0.530 5.530 11 Si 0.727 3.273 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.198 1.198 15 C 0.328 3.672 16 O -0.397 6.397 17 C 0.037 3.963 18 C -0.230 4.230 19 C -0.037 4.037 20 C -0.262 4.262 21 C 0.316 3.684 22 O -0.439 6.439 23 N -0.187 5.187 24 C -0.100 4.100 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.170 0.830 38 H 0.157 0.843 39 H 0.166 0.834 40 H 0.097 0.903 41 H 0.110 0.890 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.951 9.968 4.112 14.014 hybrid contribution 0.099 -1.012 0.626 1.194 sum -8.852 8.956 4.738 13.454 Atomic orbital electron populations 1.21745 0.94691 1.01945 1.01555 1.21520 0.95775 0.96270 0.99821 1.22038 1.01225 0.96261 1.01347 1.21904 0.80810 1.01963 0.97759 1.48221 1.05827 1.27517 1.48386 1.19438 0.94659 0.82291 0.90912 1.21368 1.41704 0.97148 0.96929 0.92228 1.24918 0.94973 0.98781 0.95187 1.69923 1.41372 1.28361 1.13338 0.86479 0.77798 0.82227 0.80841 1.20528 1.21032 1.19810 1.17836 0.86987 0.81551 0.80808 1.90824 1.13303 1.73206 1.62402 1.20713 0.94790 0.84355 0.96459 1.20835 1.03536 1.01575 0.97029 1.21377 0.93418 0.92281 0.96608 1.22236 1.06019 0.97664 1.00244 1.17296 0.81745 0.85154 0.84187 1.90912 1.63422 1.16386 1.73190 1.45446 1.42271 1.04743 1.26251 1.22540 0.96379 1.04367 0.86751 0.92825 0.92709 0.92269 0.90218 0.92613 0.93245 0.92650 0.89417 0.90308 0.94271 0.93457 0.92535 0.83028 0.84268 0.83355 0.90256 0.88991 0.87663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.19 37.16 0.34 -1.15 16 2 C -0.11 -1.50 3.11 -90.62 -0.28 -1.78 16 3 C -0.15 -1.96 6.92 37.16 0.26 -1.70 16 4 C 0.10 1.46 4.81 -4.04 -0.02 1.44 16 5 N -0.57 -10.78 2.25 -176.16 -0.40 -11.18 16 6 C 0.25 5.83 5.22 -5.19 -0.03 5.80 16 7 C -0.53 -13.93 9.39 -34.44 -0.32 -14.25 16 8 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -25.06 13.29 55.43 0.74 -24.33 16 11 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 15 C 0.54 10.40 5.02 -12.31 -0.06 10.34 16 16 O -0.52 -11.96 14.90 5.33 0.08 -11.88 16 17 C 0.15 2.32 4.13 -82.33 -0.34 1.98 16 18 C -0.21 -2.66 7.52 -39.47 -0.30 -2.95 16 19 C -0.02 -0.16 10.08 -39.53 -0.40 -0.56 16 20 C -0.24 -2.95 10.00 -39.20 -0.39 -3.34 16 21 C 0.51 8.04 7.43 -15.17 -0.11 7.92 16 22 O -0.56 -10.23 16.73 4.96 0.08 -10.15 16 23 N -0.48 -7.29 2.30 -122.80 -0.28 -7.58 16 24 C 0.04 0.59 8.81 59.85 0.53 1.12 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.17 7.97 -51.93 -0.41 0.75 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.64 7.17 -51.93 -0.37 0.27 16 31 H 0.05 0.79 4.64 -51.93 -0.24 0.55 16 32 H 0.09 1.31 8.12 -51.93 -0.42 0.89 16 33 H 0.08 1.01 4.82 -51.93 -0.25 0.76 16 34 H 0.04 0.94 7.90 -51.93 -0.41 0.53 16 35 H 0.05 1.28 7.36 -51.93 -0.38 0.90 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 37 H 0.15 1.84 7.92 -52.49 -0.42 1.42 16 38 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 39 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.08 1.04 6.16 -51.93 -0.32 0.72 16 41 H 0.09 1.29 7.56 -51.93 -0.39 0.90 16 42 H 0.10 1.69 5.50 -51.92 -0.29 1.41 16 LS Contribution 337.35 15.07 5.08 5.08 Total: -1.00 -31.58 337.35 -6.93 -38.51 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -5.99 Total: 1.36 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -1.22 Total: 4.49 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.06 Total: -43.08 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: 0.16 Total: -22.03 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.58 -6.93 -38.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756944928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.053 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds