Wall clock time and date at job start Tue Mar 31 2020 07:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46961 * 2 1 4 4 C 1.52995 * 109.47348 * 120.00603 * 2 1 3 5 5 N 1.46501 * 109.47427 * 174.34247 * 4 2 1 6 6 C 1.46502 * 119.99571 * 277.13818 * 5 4 2 7 7 C 1.50701 * 109.47016 * 269.99246 * 6 5 4 8 8 H 1.08004 * 119.99926 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00301 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99942 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00213 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47319 * 90.00312 * 11 9 7 13 13 H 1.48512 * 109.46812 * 210.00036 * 11 9 7 14 14 H 1.48502 * 109.47029 * 329.99387 * 11 9 7 15 15 C 1.34770 * 120.00109 * 97.12922 * 5 4 2 16 16 O 1.21544 * 120.00285 * 184.79424 * 15 5 4 17 17 C 1.47884 * 120.00195 * 5.07264 * 15 5 4 18 18 C 1.36302 * 119.75542 * 60.42787 * 17 15 5 19 19 C 1.40401 * 119.90618 * 180.02562 * 18 17 15 20 20 C 1.36113 * 119.41750 * 359.97438 * 19 18 17 21 21 C 1.41247 * 119.50847 * 0.02562 * 20 19 18 22 22 O 1.21959 * 119.95309 * 180.02562 * 21 20 19 23 23 N 1.34668 * 120.08325 * 359.72596 * 21 20 19 24 24 C 1.46502 * 119.70042 * 180.29094 * 23 21 20 25 25 H 1.08997 * 109.47058 * 299.99507 * 1 2 3 26 26 H 1.09000 * 109.47501 * 59.99512 * 1 2 3 27 27 H 1.09004 * 109.47068 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46701 * 239.99990 * 2 1 3 29 29 H 1.08994 * 109.47231 * 305.44980 * 3 2 1 30 30 H 1.08998 * 109.46781 * 65.45520 * 3 2 1 31 31 H 1.09006 * 109.46863 * 185.45188 * 3 2 1 32 32 H 1.09002 * 109.47371 * 54.33918 * 4 2 1 33 33 H 1.09006 * 109.47164 * 294.33746 * 4 2 1 34 34 H 1.08995 * 109.47416 * 29.99659 * 6 5 4 35 35 H 1.09007 * 109.46891 * 149.99962 * 6 5 4 36 36 H 0.96994 * 119.99888 * 179.97438 * 10 9 7 37 37 H 1.07996 * 120.04601 * 0.02562 * 18 17 15 38 38 H 1.08003 * 120.29234 * 180.02562 * 19 18 17 39 39 H 1.08001 * 120.24650 * 179.97438 * 20 19 18 40 40 H 1.09000 * 109.47068 * 275.41163 * 24 23 21 41 41 H 1.09000 * 109.47169 * 35.41591 * 24 23 21 42 42 H 1.09008 * 109.46920 * 155.41661 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.4987 -0.8404 1.1830 6 6 4.1107 -1.9312 0.4202 7 6 4.3064 -3.1247 1.3192 8 1 4.0047 -3.0758 2.3551 9 6 4.8706 -4.2791 0.8194 10 7 5.2385 -4.3386 -0.4419 11 14 5.1126 -5.7588 1.9336 12 1 3.9051 -6.6214 1.8802 13 1 6.2949 -6.5334 1.4780 14 1 5.3304 -5.2978 3.3284 15 6 4.2775 0.0536 1.8237 16 8 5.4856 0.0074 1.6982 17 6 3.6627 1.0871 2.6844 18 6 2.9155 0.7136 3.7615 19 6 2.3299 1.6922 4.5804 20 6 2.5168 3.0082 4.2877 21 6 3.2956 3.3675 3.1654 22 8 3.4687 4.5443 2.8959 23 7 3.8523 2.4124 2.3963 24 6 4.6638 2.7947 1.2381 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.5991 1.9837 -0.8371 30 1 1.7585 1.9273 0.9348 31 1 3.1256 1.4440 -0.0976 32 1 1.5963 -1.7156 1.3012 33 1 1.7619 -0.1524 2.1363 34 1 3.4591 -2.2044 -0.4098 35 1 5.0762 -1.6063 0.0324 36 1 5.6358 -5.1507 -0.7934 37 1 2.7742 -0.3336 3.9846 38 1 1.7370 1.4032 5.4357 39 1 2.0722 3.7721 4.9083 40 1 4.0137 2.9707 0.3811 41 1 5.2178 3.7050 1.4671 42 1 5.3638 1.9924 1.0043 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756944928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:20 Heat of formation + Delta-G solvation = -55.457582 kcal Electronic energy + Delta-G solvation = -24806.788058 eV Core-core repulsion = 21365.801365 eV Total energy + Delta-G solvation = -3440.986693 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.74790 -40.71362 -37.95860 -37.87728 -35.81420 -35.36372 -34.23633 -31.68952 -29.39359 -28.90581 -28.04494 -27.20197 -26.04719 -24.46062 -23.65041 -21.60195 -20.66233 -18.72023 -18.65008 -18.42957 -18.14010 -17.56653 -17.00993 -16.60165 -16.25366 -15.79819 -15.69002 -15.59076 -14.98590 -14.85243 -14.36672 -14.17998 -13.97753 -13.59250 -13.51248 -13.39719 -13.24095 -13.07475 -12.85839 -12.83651 -12.67994 -12.48334 -12.30607 -12.18384 -11.84492 -11.64184 -11.60624 -11.44463 -11.08033 -10.81524 -10.62686 -9.61338 -9.08608 -8.22277 -6.36594 -0.43086 0.66387 1.12636 1.40650 1.43166 1.52580 1.72676 2.09269 2.40690 2.53763 3.08115 3.17089 3.55121 3.84251 3.94270 3.96758 4.06774 4.15785 4.18706 4.22456 4.38489 4.42851 4.57184 4.64592 4.71305 4.82710 4.85603 4.95294 4.96566 5.00310 5.02635 5.17705 5.20455 5.21762 5.32395 5.40347 5.44280 5.51708 5.75327 5.92445 6.02420 6.46751 6.71023 6.84785 7.02524 7.34695 8.85283 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.017955 B = 0.005264 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.094357 B = 5318.243142 C = 5737.879343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 C -0.145 4.145 4 C 0.097 3.903 5 N -0.571 5.571 6 C 0.263 3.737 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.011 3.989 10 N -0.927 5.927 11 Si 0.966 3.034 12 H -0.264 1.264 13 H -0.287 1.287 14 H -0.269 1.269 15 C 0.546 3.454 16 O -0.572 6.572 17 C 0.121 3.879 18 C -0.181 4.181 19 C 0.006 3.994 20 C -0.234 4.234 21 C 0.501 3.499 22 O -0.594 6.594 23 N -0.476 5.476 24 C 0.045 3.955 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.032 0.968 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.030 0.970 35 H 0.003 0.997 36 H 0.267 0.733 37 H 0.166 0.834 38 H 0.192 0.808 39 H 0.174 0.826 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.627 9.282 7.302 17.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 C -0.202 4.202 4 C -0.025 4.025 5 N -0.299 5.299 6 C 0.142 3.858 7 C -0.581 4.581 8 H 0.080 0.920 9 C -0.188 4.188 10 N -0.567 5.567 11 Si 0.790 3.210 12 H -0.189 1.189 13 H -0.212 1.212 14 H -0.194 1.194 15 C 0.332 3.668 16 O -0.453 6.453 17 C 0.011 3.989 18 C -0.205 4.205 19 C -0.015 4.015 20 C -0.255 4.255 21 C 0.306 3.694 22 O -0.481 6.481 23 N -0.188 5.188 24 C -0.097 4.097 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.105 0.895 33 H 0.123 0.877 34 H 0.048 0.952 35 H 0.021 0.979 36 H 0.075 0.925 37 H 0.183 0.817 38 H 0.209 0.791 39 H 0.191 0.809 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.794 9.859 6.850 16.829 hybrid contribution 0.955 -0.952 -0.218 1.366 sum -10.839 8.907 6.632 15.518 Atomic orbital electron populations 1.21697 0.91979 1.02661 1.02869 1.21484 0.97906 0.95792 0.97949 1.21973 0.99827 0.96312 1.02119 1.22175 0.77944 1.02631 0.99726 1.48106 1.07680 1.26420 1.47677 1.18864 0.92734 0.83220 0.90980 1.21681 1.41397 0.97869 0.97195 0.91956 1.25805 0.94660 1.01823 0.96519 1.70049 1.42295 1.29213 1.15130 0.85439 0.78034 0.78702 0.78810 1.18870 1.21230 1.19366 1.18292 0.86331 0.81832 0.80370 1.90787 1.15726 1.74591 1.64170 1.20239 0.97653 0.83430 0.97611 1.21245 1.00935 1.03058 0.95271 1.21780 0.92295 0.90548 0.96905 1.22498 1.04856 0.99285 0.98879 1.17912 0.82028 0.84585 0.84914 1.90894 1.65147 1.17718 1.74305 1.45412 1.42358 1.04708 1.26336 1.22435 0.96361 1.03409 0.87461 0.91166 0.91748 0.91878 0.92572 0.91276 0.92771 0.94884 0.89513 0.87708 0.95190 0.97883 0.92450 0.81676 0.79084 0.80892 0.89231 0.88916 0.89828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.19 71.98 0.66 -1.83 16 2 C -0.11 -2.85 3.11 -10.80 -0.03 -2.88 16 3 C -0.15 -3.66 6.92 71.98 0.50 -3.16 16 4 C 0.10 2.76 4.81 86.38 0.42 3.17 16 5 N -0.57 -22.09 2.25 -829.53 -1.87 -23.96 16 6 C 0.26 13.10 5.22 85.63 0.45 13.55 16 7 C -0.54 -28.92 9.39 25.60 0.24 -28.67 16 8 H 0.06 3.21 7.81 -2.91 -0.02 3.18 16 9 C 0.01 0.62 5.46 84.65 0.46 1.08 16 10 N -0.93 -53.61 13.29 21.45 0.28 -53.33 16 11 Si 0.97 42.38 29.54 68.60 2.03 44.41 16 12 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 13 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 14 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 15 C 0.55 21.43 5.02 86.80 0.44 21.87 16 16 O -0.57 -27.93 14.90 -3.85 -0.06 -27.99 16 17 C 0.12 3.65 4.13 40.45 0.17 3.82 16 18 C -0.18 -4.02 7.52 22.34 0.17 -3.86 16 19 C 0.01 0.09 10.08 22.30 0.22 0.31 16 20 C -0.23 -4.80 10.00 22.51 0.23 -4.57 16 21 C 0.50 14.87 7.43 85.00 0.63 15.50 16 22 O -0.59 -21.50 16.73 -5.18 -0.09 -21.59 16 23 N -0.48 -14.42 2.30 -660.59 -1.52 -15.94 16 24 C 0.04 1.37 8.81 127.77 1.13 2.49 16 25 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.06 1.69 7.97 -2.38 -0.02 1.67 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.31 7.17 -2.39 -0.02 1.29 16 31 H 0.03 0.97 4.64 -2.38 -0.01 0.96 16 32 H 0.09 2.49 8.12 -2.39 -0.02 2.47 16 33 H 0.10 2.40 4.82 -2.38 -0.01 2.39 16 34 H 0.03 1.53 7.90 -2.39 -0.02 1.51 16 35 H 0.00 0.18 7.36 -2.38 -0.02 0.16 16 36 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 37 H 0.17 3.29 7.92 -2.91 -0.02 3.27 16 38 H 0.19 1.16 8.06 -2.91 -0.02 1.14 16 39 H 0.17 2.74 8.06 -2.91 -0.02 2.72 16 40 H 0.09 2.48 6.16 -2.39 -0.01 2.46 16 41 H 0.09 2.75 7.56 -2.39 -0.02 2.73 16 42 H 0.08 2.93 5.50 -2.38 -0.01 2.92 16 Total: -1.00 -72.47 337.35 5.47 -67.01 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 1.02 Total: 14.57 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 5.67 Total: 16.82 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -3.10 Total: -93.23 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -0.14 Total: -49.57 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -72.47 5.47 -67.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756944928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.550 kcal (2) G-P(sol) polarization free energy of solvation -72.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds