Wall clock time and date at job start Tue Mar 31 2020 07:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47270 * 2 1 4 4 C 1.53005 * 109.46906 * 119.99872 * 2 1 3 5 5 N 1.46503 * 109.47068 * 65.51759 * 4 2 1 6 6 C 1.46503 * 119.99451 * 264.35365 * 5 4 2 7 7 C 1.50700 * 109.46947 * 276.17337 * 6 5 4 8 8 H 1.07997 * 119.99974 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99961 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00179 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00190 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47062 * 60.00034 * 11 9 7 13 13 H 1.48500 * 109.47322 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.47275 * 299.99858 * 11 9 7 15 15 C 1.34766 * 120.00294 * 84.35597 * 5 4 2 16 16 O 1.21290 * 119.99723 * 5.37431 * 15 5 4 17 17 C 1.50700 * 120.00445 * 185.37923 * 15 5 4 18 18 H 1.09005 * 109.46985 * 46.61483 * 17 15 5 19 19 O 1.42892 * 109.47458 * 166.61542 * 17 15 5 20 20 C 1.50697 * 109.46852 * 286.61628 * 17 15 5 21 21 C 1.38675 * 120.41687 * 109.46434 * 20 17 15 22 22 C 1.38629 * 118.42136 * 180.27288 * 21 20 17 23 23 C 1.38234 * 119.16086 * 0.02723 * 22 21 20 24 24 N 1.31849 * 120.75956 * 359.97330 * 23 22 21 25 25 C 1.31883 * 121.72927 * 0.02562 * 24 23 22 26 26 H 1.08995 * 109.46692 * 300.00375 * 1 2 3 27 27 H 1.09004 * 109.46397 * 60.00014 * 1 2 3 28 28 H 1.08998 * 109.47377 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47141 * 239.99633 * 2 1 3 30 30 H 1.09005 * 109.46928 * 184.98340 * 3 2 1 31 31 H 1.09005 * 109.46938 * 304.97721 * 3 2 1 32 32 H 1.08997 * 109.47670 * 64.97915 * 3 2 1 33 33 H 1.08998 * 109.46837 * 305.51853 * 4 2 1 34 34 H 1.09001 * 109.46824 * 185.51929 * 4 2 1 35 35 H 1.08998 * 109.47427 * 36.17399 * 6 5 4 36 36 H 1.08997 * 109.46762 * 156.17940 * 6 5 4 37 37 H 0.96997 * 120.00384 * 180.02562 * 10 9 7 38 38 H 0.96701 * 113.99869 * 60.00114 * 19 17 15 39 39 H 1.07996 * 120.79267 * 0.27665 * 21 20 17 40 40 H 1.07998 * 120.41976 * 179.97438 * 22 21 20 41 41 H 1.07997 * 119.61711 * 179.97438 * 23 22 21 42 42 H 1.08003 * 119.61668 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6631 -2.1355 1.1848 6 6 0.4467 -2.6006 1.8559 7 6 0.7459 -2.8697 3.3082 8 1 1.7423 -2.7098 3.6928 9 6 -0.2524 -3.3200 4.1457 10 7 -1.4659 -3.5143 3.6774 11 14 0.1182 -3.6529 5.9461 12 1 0.5928 -2.4033 6.5930 13 1 -1.1147 -4.1245 6.6264 14 1 1.1710 -4.6949 6.0504 15 6 2.4353 -3.0085 0.5081 16 8 3.4912 -2.6443 0.0355 17 6 1.9868 -4.4372 0.3387 18 1 0.9425 -4.4556 0.0265 19 8 2.7922 -5.0747 -0.6547 20 6 2.1324 -5.1681 1.6484 21 6 1.0102 -5.5446 2.3709 22 6 1.1923 -6.2100 3.5734 23 6 2.4773 -6.4737 4.0094 24 7 3.5214 -6.1006 3.2959 25 6 3.3859 -5.4660 2.1478 26 1 -0.3632 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1265 1.4437 -0.0893 31 1 1.6058 1.9814 -0.8421 32 1 1.7515 1.9299 0.9312 33 1 1.5982 -0.2676 2.1365 34 1 3.1256 -0.6364 1.3001 35 1 -0.3256 -1.8353 1.7798 36 1 0.0978 -3.5175 1.3809 37 1 -2.1684 -3.8307 4.2667 38 1 3.7354 -5.0950 -0.4426 39 1 0.0180 -5.3248 2.0055 40 1 0.3410 -6.5178 4.1624 41 1 2.6276 -6.9913 4.9453 42 1 4.2649 -5.1766 1.5910 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764898736.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:06 Heat of formation + Delta-G solvation = -57.175716 kcal Electronic energy + Delta-G solvation = -25140.774821 eV Core-core repulsion = 21699.713624 eV Total energy + Delta-G solvation = -3441.061197 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.28876 -38.91185 -36.77467 -35.56232 -34.28779 -32.49238 -31.98623 -30.86598 -27.78651 -27.37052 -26.81933 -24.91605 -23.22744 -22.88185 -21.87411 -20.14407 -18.84647 -17.19501 -16.87879 -16.68598 -16.22237 -15.63714 -15.42413 -14.79078 -14.60363 -14.45549 -13.75884 -13.68627 -13.35357 -13.17810 -12.80334 -12.57371 -12.49016 -12.27709 -12.00678 -11.87041 -11.63726 -11.52422 -11.37691 -11.11706 -10.97454 -10.74060 -10.64576 -10.50970 -10.30066 -10.19564 -9.84136 -9.35945 -8.90080 -8.84202 -8.62928 -8.32300 -7.81146 -6.30854 -4.34789 1.62298 1.99340 3.14647 3.16478 3.20238 3.27881 3.74723 4.23524 4.34045 4.77137 4.88538 5.03380 5.11294 5.16693 5.26716 5.29202 5.37193 5.42821 5.49494 5.71063 5.85091 5.88970 5.93692 5.98457 6.12603 6.14393 6.23530 6.26849 6.30474 6.37790 6.51361 6.67918 6.69155 6.80027 6.85683 7.02086 7.26494 7.40017 7.64341 7.74855 7.91732 8.20605 8.48627 8.64682 8.83452 9.30918 10.74802 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.008179 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.785369 B = 3422.603971 C = 4799.515993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.126 3.874 5 N -0.584 5.584 6 C 0.229 3.771 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.077 3.923 10 N -0.888 5.888 11 Si 0.877 3.123 12 H -0.278 1.278 13 H -0.285 1.285 14 H -0.266 1.266 15 C 0.492 3.508 16 O -0.565 6.565 17 C 0.145 3.855 18 H 0.127 0.873 19 O -0.539 6.539 20 C -0.164 4.164 21 C 0.011 3.989 22 C -0.164 4.164 23 C 0.096 3.904 24 N -0.497 5.497 25 C 0.107 3.893 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.037 0.963 37 H 0.266 0.734 38 H 0.379 0.621 39 H 0.141 0.859 40 H 0.125 0.875 41 H 0.143 0.857 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.910 0.069 -3.688 4.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.130 4.130 3 C -0.199 4.199 4 C 0.002 3.998 5 N -0.314 5.314 6 C 0.109 3.891 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.127 4.127 10 N -0.527 5.527 11 Si 0.704 3.296 12 H -0.204 1.204 13 H -0.211 1.211 14 H -0.191 1.191 15 C 0.279 3.721 16 O -0.447 6.447 17 C 0.082 3.918 18 H 0.144 0.856 19 O -0.344 6.344 20 C -0.167 4.167 21 C -0.015 4.015 22 C -0.184 4.184 23 C -0.061 4.061 24 N -0.206 5.206 25 C -0.050 4.050 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.227 0.773 39 H 0.159 0.841 40 H 0.143 0.857 41 H 0.161 0.839 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.509 -0.069 -3.836 4.584 hybrid contribution -0.459 0.296 1.374 1.479 sum 2.049 0.227 -2.461 3.211 Atomic orbital electron populations 1.21880 0.94984 1.02396 1.00931 1.21488 0.96327 0.95920 0.99312 1.21744 1.00770 0.95895 1.01492 1.21362 1.00049 0.81081 0.97287 1.48182 1.26432 1.07225 1.49599 1.19713 0.81221 0.96037 0.92082 1.21328 0.96447 1.44870 0.93650 0.92495 1.24763 0.94696 0.95025 0.98174 1.69887 1.01251 1.45444 1.36070 0.86884 0.78066 0.79400 0.85263 1.20398 1.21099 1.19085 1.21106 0.84431 0.88165 0.78393 1.90610 1.23363 1.79443 1.51236 1.20536 0.96833 0.88240 0.86222 0.85554 1.86567 1.22829 1.79337 1.45703 1.20862 0.95390 1.02253 0.98196 1.21330 0.98667 0.89059 0.92411 1.21884 0.98182 1.01130 0.97237 1.22541 0.88611 0.96727 0.98183 1.67583 1.34485 1.12145 1.06350 1.22202 0.95727 0.94758 0.92271 0.92640 0.93613 0.91920 0.91354 0.92859 0.92922 0.92689 0.90161 0.91378 0.93955 0.94513 0.92395 0.77264 0.84136 0.85717 0.83925 0.84101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.37 37.16 0.31 -1.87 16 2 C -0.11 -1.72 3.08 -90.62 -0.28 -2.00 16 3 C -0.14 -1.82 9.19 37.15 0.34 -1.48 16 4 C 0.13 2.25 4.84 -4.04 -0.02 2.23 16 5 N -0.58 -11.48 2.20 -175.06 -0.39 -11.86 16 6 C 0.23 4.84 3.90 -5.19 -0.02 4.82 16 7 C -0.52 -12.25 6.87 -34.44 -0.24 -12.49 16 8 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 9 C 0.08 1.81 4.29 -17.82 -0.08 1.73 16 10 N -0.89 -21.52 13.29 55.43 0.74 -20.79 16 11 Si 0.88 19.27 28.67 -169.99 -4.87 14.40 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 13 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 14 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 15 C 0.49 9.77 6.83 -10.99 -0.08 9.69 16 16 O -0.57 -12.18 15.95 -14.00 -0.22 -12.41 16 17 C 0.14 2.60 2.90 -29.04 -0.08 2.51 16 18 H 0.13 2.20 6.73 -51.93 -0.35 1.85 16 19 O -0.54 -9.15 13.00 -54.78 -0.71 -9.86 16 20 C -0.16 -3.01 4.11 -104.48 -0.43 -3.44 16 21 C 0.01 0.21 5.97 -39.28 -0.23 -0.02 16 22 C -0.16 -2.97 8.79 -39.44 -0.35 -3.32 16 23 C 0.10 1.71 11.18 -17.55 -0.20 1.51 16 24 N -0.50 -9.42 10.36 -13.25 -0.14 -9.55 16 25 C 0.11 1.97 10.33 -17.55 -0.18 1.79 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 1.04 6.21 -51.93 -0.32 0.72 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.46 8.03 -51.93 -0.42 1.04 16 34 H 0.07 1.27 7.53 -51.93 -0.39 0.88 16 35 H 0.04 0.95 6.38 -51.93 -0.33 0.62 16 36 H 0.04 0.78 3.95 -51.93 -0.21 0.58 16 37 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 38 H 0.38 5.59 7.53 45.56 0.34 5.93 16 39 H 0.14 2.71 6.85 -52.49 -0.36 2.35 16 40 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 41 H 0.14 2.17 8.06 -52.49 -0.42 1.75 16 42 H 0.14 2.35 7.23 -52.48 -0.38 1.97 16 LS Contribution 336.96 15.07 5.08 5.08 Total: -1.00 -26.70 336.96 -7.38 -34.08 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -5.34 Total: 11.24 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -1.53 Total: -0.32 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.21 Total: -42.20 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.94 Total: -22.27 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.87 Total: 14.40 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -26.70 -7.38 -34.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764898736.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.095 kcal (2) G-P(sol) polarization free energy of solvation -26.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds