Wall clock time and date at job start Tue Mar 31 2020 07:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47270 * 2 1 4 4 C 1.53005 * 109.46906 * 119.99872 * 2 1 3 5 5 N 1.46503 * 109.47068 * 65.51759 * 4 2 1 6 6 C 1.46503 * 119.99451 * 264.35365 * 5 4 2 7 7 C 1.50700 * 109.46947 * 276.17337 * 6 5 4 8 8 H 1.07997 * 119.99974 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99961 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00179 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00190 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47062 * 60.00034 * 11 9 7 13 13 H 1.48500 * 109.47322 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.47275 * 299.99858 * 11 9 7 15 15 C 1.34766 * 120.00294 * 84.35597 * 5 4 2 16 16 O 1.21290 * 119.99723 * 5.37431 * 15 5 4 17 17 C 1.50700 * 120.00445 * 185.37923 * 15 5 4 18 18 H 1.09005 * 109.46985 * 46.61483 * 17 15 5 19 19 O 1.42892 * 109.47458 * 166.61542 * 17 15 5 20 20 C 1.50697 * 109.46852 * 286.61628 * 17 15 5 21 21 C 1.38675 * 120.41687 * 109.46434 * 20 17 15 22 22 C 1.38629 * 118.42136 * 180.27288 * 21 20 17 23 23 C 1.38234 * 119.16086 * 0.02723 * 22 21 20 24 24 N 1.31849 * 120.75956 * 359.97330 * 23 22 21 25 25 C 1.31883 * 121.72927 * 0.02562 * 24 23 22 26 26 H 1.08995 * 109.46692 * 300.00375 * 1 2 3 27 27 H 1.09004 * 109.46397 * 60.00014 * 1 2 3 28 28 H 1.08998 * 109.47377 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47141 * 239.99633 * 2 1 3 30 30 H 1.09005 * 109.46928 * 184.98340 * 3 2 1 31 31 H 1.09005 * 109.46938 * 304.97721 * 3 2 1 32 32 H 1.08997 * 109.47670 * 64.97915 * 3 2 1 33 33 H 1.08998 * 109.46837 * 305.51853 * 4 2 1 34 34 H 1.09001 * 109.46824 * 185.51929 * 4 2 1 35 35 H 1.08998 * 109.47427 * 36.17399 * 6 5 4 36 36 H 1.08997 * 109.46762 * 156.17940 * 6 5 4 37 37 H 0.96997 * 120.00384 * 180.02562 * 10 9 7 38 38 H 0.96701 * 113.99869 * 60.00114 * 19 17 15 39 39 H 1.07996 * 120.79267 * 0.27665 * 21 20 17 40 40 H 1.07998 * 120.41976 * 179.97438 * 22 21 20 41 41 H 1.07997 * 119.61711 * 179.97438 * 23 22 21 42 42 H 1.08003 * 119.61668 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6631 -2.1355 1.1848 6 6 0.4467 -2.6006 1.8559 7 6 0.7459 -2.8697 3.3082 8 1 1.7423 -2.7098 3.6928 9 6 -0.2524 -3.3200 4.1457 10 7 -1.4659 -3.5143 3.6774 11 14 0.1182 -3.6529 5.9461 12 1 0.5928 -2.4033 6.5930 13 1 -1.1147 -4.1245 6.6264 14 1 1.1710 -4.6949 6.0504 15 6 2.4353 -3.0085 0.5081 16 8 3.4912 -2.6443 0.0355 17 6 1.9868 -4.4372 0.3387 18 1 0.9425 -4.4556 0.0265 19 8 2.7922 -5.0747 -0.6547 20 6 2.1324 -5.1681 1.6484 21 6 1.0102 -5.5446 2.3709 22 6 1.1923 -6.2100 3.5734 23 6 2.4773 -6.4737 4.0094 24 7 3.5214 -6.1006 3.2959 25 6 3.3859 -5.4660 2.1478 26 1 -0.3632 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1265 1.4437 -0.0893 31 1 1.6058 1.9814 -0.8421 32 1 1.7515 1.9299 0.9312 33 1 1.5982 -0.2676 2.1365 34 1 3.1256 -0.6364 1.3001 35 1 -0.3256 -1.8353 1.7798 36 1 0.0978 -3.5175 1.3809 37 1 -2.1684 -3.8307 4.2667 38 1 3.7354 -5.0950 -0.4426 39 1 0.0180 -5.3248 2.0055 40 1 0.3410 -6.5178 4.1624 41 1 2.6276 -6.9913 4.9453 42 1 4.2649 -5.1766 1.5910 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764898736.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:05 Heat of formation + Delta-G solvation = -72.321980 kcal Electronic energy + Delta-G solvation = -25141.431612 eV Core-core repulsion = 21699.713624 eV Total energy + Delta-G solvation = -3441.717988 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.78616 -40.40644 -38.18946 -37.06200 -35.80954 -34.21760 -33.43584 -32.29071 -29.44194 -28.87271 -27.99796 -26.37859 -24.89809 -24.39117 -23.32766 -21.46447 -20.33999 -18.71262 -18.49221 -18.35277 -17.70928 -17.12171 -16.89628 -16.42702 -16.17284 -15.85978 -15.17341 -15.03054 -14.78719 -14.64640 -14.33713 -14.13408 -13.97500 -13.70435 -13.33790 -13.30371 -13.04952 -13.00890 -12.87252 -12.68778 -12.55843 -12.16227 -12.14980 -11.97734 -11.83845 -11.58505 -11.55472 -10.89340 -10.48479 -10.33838 -10.30645 -9.78555 -9.43666 -8.15062 -6.22714 0.19391 0.53596 1.38056 1.43928 1.47831 1.61049 2.20827 2.44646 2.90681 3.16958 3.39266 3.48659 3.64553 3.76290 3.90455 3.99193 4.03370 4.12269 4.18732 4.26229 4.48329 4.59538 4.67174 4.73797 4.79939 4.85273 4.89721 4.93510 5.02134 5.05241 5.16930 5.25420 5.34953 5.40282 5.43553 5.46493 5.69909 5.84200 5.84733 6.10563 6.43995 6.57845 6.82287 7.05584 7.20695 7.45579 8.89398 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.013224 B = 0.008179 C = 0.005833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.785369 B = 3422.603971 C = 4799.515993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 C -0.136 4.136 4 C 0.123 3.877 5 N -0.585 5.585 6 C 0.244 3.756 7 C -0.523 4.523 8 H 0.034 0.966 9 C 0.059 3.941 10 N -0.902 5.902 11 Si 0.908 3.092 12 H -0.292 1.292 13 H -0.281 1.281 14 H -0.257 1.257 15 C 0.489 3.511 16 O -0.584 6.584 17 C 0.153 3.847 18 H 0.131 0.869 19 O -0.539 6.539 20 C -0.167 4.167 21 C 0.004 3.996 22 C -0.170 4.170 23 C 0.091 3.909 24 N -0.509 5.509 25 C 0.100 3.900 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.032 0.968 36 H 0.039 0.961 37 H 0.267 0.733 38 H 0.388 0.612 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.170 0.830 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.900 0.146 -3.640 4.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.123 4.123 3 C -0.193 4.193 4 C 0.000 4.000 5 N -0.315 5.315 6 C 0.124 3.876 7 C -0.562 4.562 8 H 0.052 0.948 9 C -0.144 4.144 10 N -0.541 5.541 11 Si 0.735 3.265 12 H -0.218 1.218 13 H -0.206 1.206 14 H -0.181 1.181 15 C 0.276 3.724 16 O -0.467 6.467 17 C 0.090 3.910 18 H 0.149 0.851 19 O -0.346 6.346 20 C -0.170 4.170 21 C -0.022 4.022 22 C -0.190 4.190 23 C -0.065 4.065 24 N -0.219 5.219 25 C -0.057 4.057 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.239 0.761 39 H 0.151 0.849 40 H 0.154 0.846 41 H 0.187 0.813 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.506 0.006 -3.791 4.544 hybrid contribution -0.430 0.277 1.367 1.460 sum 2.076 0.283 -2.424 3.204 Atomic orbital electron populations 1.21822 0.94477 1.01414 1.01950 1.21411 0.96633 0.97190 0.97102 1.21705 1.00899 0.94018 1.02709 1.21478 0.99512 0.80522 0.98522 1.48204 1.25960 1.08047 1.49307 1.19442 0.81401 0.95642 0.91130 1.21231 0.95265 1.44991 0.94676 0.94808 1.25031 0.94573 0.94910 0.99846 1.69924 1.01562 1.45880 1.36702 0.86394 0.78232 0.78846 0.82987 1.21839 1.20639 1.18139 1.21438 0.84094 0.88872 0.77963 1.90592 1.24083 1.79964 1.52040 1.20429 0.97157 0.87049 0.86369 0.85141 1.86550 1.23642 1.78992 1.45385 1.20882 0.95441 1.02364 0.98291 1.21334 0.98389 0.89566 0.92940 1.22066 0.98859 1.00934 0.97101 1.22997 0.88239 0.96340 0.98933 1.67631 1.35050 1.12526 1.06648 1.22451 0.96198 0.94641 0.92401 0.92709 0.91453 0.93885 0.92826 0.92737 0.91072 0.91971 0.90626 0.92287 0.95040 0.94376 0.92303 0.76124 0.84920 0.84573 0.81283 0.82859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.04 8.37 71.98 0.60 -3.44 16 2 C -0.10 -3.13 3.08 -10.79 -0.03 -3.16 16 3 C -0.14 -3.24 9.19 71.98 0.66 -2.57 16 4 C 0.12 4.39 4.84 86.38 0.42 4.80 16 5 N -0.59 -23.00 2.20 -826.14 -1.82 -24.82 16 6 C 0.24 10.31 3.90 85.63 0.33 10.64 16 7 C -0.52 -24.31 6.87 25.60 0.18 -24.14 16 8 H 0.03 1.72 7.81 -2.91 -0.02 1.70 16 9 C 0.06 2.72 4.29 84.65 0.36 3.08 16 10 N -0.90 -42.98 13.29 21.45 0.28 -42.70 16 11 Si 0.91 38.43 28.67 68.60 1.97 40.40 16 12 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 13 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 14 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 15 C 0.49 19.27 6.83 87.66 0.60 19.86 16 16 O -0.58 -24.99 15.95 15.63 0.25 -24.74 16 17 C 0.15 5.40 2.90 29.10 0.08 5.49 16 18 H 0.13 4.48 6.73 -2.38 -0.02 4.47 16 19 O -0.54 -17.76 13.00 -130.29 -1.69 -19.45 16 20 C -0.17 -6.01 4.11 -19.78 -0.08 -6.09 16 21 C 0.00 0.13 5.97 22.47 0.13 0.27 16 22 C -0.17 -5.90 8.79 22.36 0.20 -5.70 16 23 C 0.09 3.09 11.18 84.69 0.95 4.03 16 24 N -0.51 -18.59 10.36 -195.84 -2.03 -20.62 16 25 C 0.10 3.56 10.33 84.67 0.87 4.44 16 26 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.04 1.40 6.21 -2.39 -0.01 1.39 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.05 1.28 8.14 -2.38 -0.02 1.27 16 31 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 2.74 8.03 -2.39 -0.02 2.72 16 34 H 0.06 2.20 7.53 -2.39 -0.02 2.18 16 35 H 0.03 1.41 6.38 -2.39 -0.02 1.40 16 36 H 0.04 1.62 3.95 -2.39 -0.01 1.61 16 37 H 0.27 12.40 8.31 -92.71 -0.77 11.63 16 38 H 0.39 11.05 7.53 -74.06 -0.56 10.49 16 39 H 0.13 5.07 6.85 -2.91 -0.02 5.05 16 40 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 41 H 0.17 4.70 8.06 -2.91 -0.02 4.67 16 42 H 0.15 4.96 7.23 -2.91 -0.02 4.94 16 Total: -1.00 -54.49 336.96 2.71 -51.79 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: 0.47 Total: 32.64 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 5.28 Total: 7.51 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -3.56 Total: -88.14 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -1.44 Total: -44.19 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 1.97 Total: 40.40 kcal Total: -54.49 2.71 -51.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764898736.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.537 kcal (2) G-P(sol) polarization free energy of solvation -54.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds