Wall clock time and date at job start Tue Mar 31 2020 07:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46661 * 2 1 4 4 C 1.53005 * 109.46818 * 119.99306 * 2 1 3 5 5 N 1.46508 * 109.46755 * 65.00447 * 4 2 1 6 6 C 1.46496 * 119.99908 * 264.79384 * 5 4 2 7 7 C 1.50705 * 109.47309 * 264.27340 * 6 5 4 8 8 H 1.07997 * 119.99746 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00077 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99875 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99975 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47221 * 89.99568 * 11 9 7 13 13 H 1.48496 * 109.47369 * 209.99869 * 11 9 7 14 14 H 1.48498 * 109.47013 * 329.99888 * 11 9 7 15 15 C 1.34770 * 119.99789 * 84.79509 * 5 4 2 16 16 O 1.21612 * 120.00263 * 4.57486 * 15 5 4 17 17 C 1.47419 * 119.99686 * 184.56988 * 15 5 4 18 18 C 1.36098 * 126.44803 * 174.40864 * 17 15 5 19 19 O 1.34262 * 106.94674 * 180.02562 * 18 17 15 20 20 C 1.34051 * 108.22742 * 359.97438 * 19 18 17 21 21 C 1.50695 * 125.37436 * 179.97438 * 20 19 18 22 22 C 1.53001 * 117.50238 * 351.28040 * 21 20 19 23 23 C 1.53000 * 117.50123 * 59.94081 * 21 20 19 24 24 N 1.29932 * 109.24637 * 0.26441 * 20 19 18 25 25 H 1.09004 * 109.46966 * 60.00721 * 1 2 3 26 26 H 1.09000 * 109.47230 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47671 * 300.00561 * 1 2 3 28 28 H 1.08998 * 109.46954 * 239.99507 * 2 1 3 29 29 H 1.09005 * 109.46547 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.46872 * 299.99158 * 3 2 1 31 31 H 1.08998 * 109.47839 * 60.00049 * 3 2 1 32 32 H 1.08994 * 109.47460 * 305.00250 * 4 2 1 33 33 H 1.08994 * 109.46837 * 184.99880 * 4 2 1 34 34 H 1.09011 * 109.47065 * 24.27027 * 6 5 4 35 35 H 1.08996 * 109.47449 * 144.27140 * 6 5 4 36 36 H 0.96998 * 119.99415 * 180.02562 * 10 9 7 37 37 H 1.07995 * 126.52493 * 0.03043 * 18 17 15 38 38 H 1.09005 * 115.55209 * 205.60584 * 21 20 19 39 39 H 1.09000 * 117.49873 * 215.00436 * 22 21 20 40 40 H 1.09004 * 117.49787 * 0.02562 * 22 21 20 41 41 H 1.09005 * 117.49652 * 359.97236 * 23 21 20 42 42 H 1.08998 * 117.50182 * 144.97370 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 1.6524 -2.1328 1.1907 6 6 0.4304 -2.5853 1.8602 7 6 0.7753 -3.1248 3.2244 8 1 1.8021 -3.1304 3.5591 9 6 -0.2199 -3.6121 4.0448 10 7 -1.4702 -3.6057 3.6370 11 14 0.2077 -4.2815 5.7355 12 1 0.1486 -3.1824 6.7325 13 1 -0.7636 -5.3410 6.1086 14 1 1.5780 -4.8530 5.7096 15 6 2.4201 -3.0150 0.5209 16 8 3.4763 -2.6568 0.0361 17 6 1.9795 -4.4144 0.3761 18 6 2.5922 -5.3832 -0.3574 19 8 1.8639 -6.5020 -0.2144 20 6 0.8269 -6.2273 0.5895 21 6 -0.2370 -7.2092 1.0075 22 6 -0.2486 -8.5747 0.3172 23 6 0.2131 -8.4559 1.7718 24 7 0.8807 -4.9791 0.9465 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9562 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6053 -0.2616 2.1370 33 1 3.1262 -0.6442 1.2953 34 1 -0.2585 -1.7469 1.9645 35 1 -0.0394 -3.3700 1.2673 36 1 -2.1704 -3.9482 4.2144 37 1 3.4929 -5.2731 -0.9430 38 1 -1.1991 -6.7736 1.2773 39 1 -1.2183 -9.0372 0.1329 40 1 0.5136 -8.7629 -0.4389 41 1 1.2790 -8.5660 1.9720 42 1 -0.4525 -8.8401 2.5447 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777243017.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:51 Heat of formation + Delta-G solvation = 16.143131 kcal Electronic energy + Delta-G solvation = -24337.620282 eV Core-core repulsion = 20899.738429 eV Total energy + Delta-G solvation = -3437.881853 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.86993 -39.04127 -37.00913 -36.03272 -34.53949 -33.49528 -32.09182 -29.74923 -27.48430 -26.75576 -25.93213 -23.86877 -23.29967 -22.43429 -22.16414 -20.71839 -19.72768 -18.51002 -16.98523 -16.53965 -16.14835 -16.02893 -15.54684 -15.32274 -14.62003 -14.38963 -14.34277 -14.09404 -13.22994 -13.09813 -12.82838 -12.32288 -12.20172 -12.08463 -11.95773 -11.55824 -11.54511 -11.31790 -11.11691 -10.94990 -10.84064 -10.72992 -10.51714 -10.48530 -10.30126 -10.23116 -10.05963 -9.62006 -9.37880 -9.15102 -8.39617 -8.24869 -7.56295 -5.94269 -3.94517 1.62137 2.64029 3.00409 3.31584 3.37940 3.42976 3.84195 3.88213 4.06986 4.32118 4.51183 4.86541 5.00101 5.13788 5.27038 5.33362 5.35925 5.41461 5.45436 5.56068 5.62450 5.82160 5.90565 5.99031 6.04872 6.05926 6.10052 6.14249 6.19988 6.27136 6.29543 6.37104 6.43868 6.58122 6.66952 6.77707 6.94963 7.58491 7.84147 7.97074 8.18876 8.35840 8.41250 8.94915 9.09445 9.66907 11.13892 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.011795 B = 0.006949 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.254862 B = 4028.254722 C = 5575.058103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.124 3.876 5 N -0.574 5.574 6 C 0.224 3.776 7 C -0.507 4.507 8 H 0.049 0.951 9 C 0.072 3.928 10 N -0.889 5.889 11 Si 0.884 3.116 12 H -0.283 1.283 13 H -0.287 1.287 14 H -0.278 1.278 15 C 0.594 3.406 16 O -0.575 6.575 17 C -0.046 4.046 18 C -0.020 4.020 19 O -0.208 6.208 20 C 0.199 3.801 21 C -0.056 4.056 22 C -0.169 4.169 23 C -0.160 4.160 24 N -0.383 5.383 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.031 0.969 35 H 0.081 0.919 36 H 0.258 0.742 37 H 0.222 0.778 38 H 0.149 0.851 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.857 -3.600 -7.620 8.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.130 4.130 3 C -0.199 4.199 4 C 0.000 4.000 5 N -0.301 5.301 6 C 0.104 3.896 7 C -0.546 4.546 8 H 0.067 0.933 9 C -0.130 4.130 10 N -0.529 5.529 11 Si 0.713 3.287 12 H -0.209 1.209 13 H -0.212 1.212 14 H -0.203 1.203 15 C 0.382 3.618 16 O -0.458 6.458 17 C -0.167 4.167 18 C -0.094 4.094 19 O -0.095 6.095 20 C -0.009 4.009 21 C -0.075 4.075 22 C -0.207 4.207 23 C -0.198 4.198 24 N -0.110 5.110 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.239 0.761 38 H 0.167 0.833 39 H 0.124 0.876 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.723 -3.147 -7.382 8.208 hybrid contribution 0.691 -0.648 0.789 1.232 sum 2.413 -3.794 -6.594 7.981 Atomic orbital electron populations 1.21870 0.94936 1.02590 1.00833 1.21489 0.96408 0.95847 0.99283 1.21745 1.00789 0.95901 1.01429 1.21424 1.00040 0.81140 0.97348 1.48151 1.26317 1.06660 1.48992 1.20066 0.80035 0.96444 0.93006 1.21265 0.93428 1.40231 0.99658 0.93291 1.24715 0.94902 0.95754 0.97622 1.69928 0.99384 1.47088 1.36509 0.86730 0.78091 0.78790 0.85131 1.20946 1.21243 1.20293 1.16809 0.83353 0.82892 0.78767 1.90696 1.23472 1.79298 1.52314 1.21897 0.95648 0.97114 1.02079 1.25020 0.98243 0.83096 1.02993 1.84255 1.33352 1.37118 1.54771 1.25402 0.89505 0.92932 0.93032 1.20177 0.95940 0.85898 1.05437 1.23087 1.03691 0.97864 0.96060 1.23079 1.02623 0.99153 0.94991 1.71561 1.16809 1.04153 1.18527 0.93680 0.91792 0.92645 0.91363 0.92815 0.92982 0.92670 0.90202 0.91215 0.95151 0.90195 0.93201 0.76130 0.83349 0.87649 0.88210 0.88436 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.34 37.16 0.31 -2.05 16 2 C -0.11 -1.81 3.09 -90.62 -0.28 -2.09 16 3 C -0.14 -1.87 9.19 37.16 0.34 -1.52 16 4 C 0.12 2.37 4.80 -4.03 -0.02 2.35 16 5 N -0.57 -12.78 2.21 -176.33 -0.39 -13.17 16 6 C 0.22 5.55 3.68 -5.19 -0.02 5.53 16 7 C -0.51 -13.80 8.57 -34.44 -0.29 -14.09 16 8 H 0.05 1.40 7.81 -52.49 -0.41 0.99 16 9 C 0.07 1.95 5.46 -17.82 -0.10 1.85 16 10 N -0.89 -24.76 13.29 55.43 0.74 -24.02 16 11 Si 0.88 21.44 29.54 -169.99 -5.02 16.42 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 C 0.59 13.38 7.58 -12.52 -0.09 13.28 16 16 O -0.58 -13.23 16.53 5.27 0.09 -13.14 16 17 C -0.05 -0.99 6.67 -83.02 -0.55 -1.54 16 18 C -0.02 -0.35 11.95 29.96 0.36 0.01 16 19 O -0.21 -3.52 10.40 6.49 0.07 -3.45 16 20 C 0.20 3.71 7.80 -13.08 -0.10 3.61 16 21 C -0.06 -0.85 6.33 -91.77 -0.58 -1.43 16 22 C -0.17 -1.90 10.16 -26.69 -0.27 -2.18 16 23 C -0.16 -2.03 10.24 -26.69 -0.27 -2.30 16 24 N -0.38 -8.47 7.22 -7.65 -0.06 -8.53 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 1.19 6.40 -51.93 -0.33 0.86 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.51 8.03 -51.93 -0.42 1.10 16 33 H 0.07 1.34 7.52 -51.93 -0.39 0.95 16 34 H 0.03 0.79 6.83 -51.92 -0.35 0.43 16 35 H 0.08 2.10 5.18 -51.93 -0.27 1.83 16 36 H 0.26 6.88 8.31 -40.82 -0.34 6.55 16 37 H 0.22 3.00 8.06 -52.49 -0.42 2.58 16 38 H 0.15 2.35 8.14 -51.93 -0.42 1.93 16 39 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.10 1.09 7.94 -51.93 -0.41 0.68 16 41 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 351.86 15.07 5.30 5.30 Total: -1.00 -31.01 351.86 -7.22 -38.23 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -6.37 Total: 2.94 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -1.58 Total: -0.58 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: 0.29 Total: -45.72 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: 0.15 Total: -16.59 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.01 -7.22 -38.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777243017.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.372 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds