Wall clock time and date at job start Tue Mar 31 2020 07:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46661 * 2 1 4 4 C 1.53005 * 109.46818 * 119.99306 * 2 1 3 5 5 N 1.46508 * 109.46755 * 65.00447 * 4 2 1 6 6 C 1.46496 * 119.99908 * 264.79384 * 5 4 2 7 7 C 1.50705 * 109.47309 * 264.27340 * 6 5 4 8 8 H 1.07997 * 119.99746 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00077 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99875 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99975 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47221 * 89.99568 * 11 9 7 13 13 H 1.48496 * 109.47369 * 209.99869 * 11 9 7 14 14 H 1.48498 * 109.47013 * 329.99888 * 11 9 7 15 15 C 1.34770 * 119.99789 * 84.79509 * 5 4 2 16 16 O 1.21612 * 120.00263 * 4.57486 * 15 5 4 17 17 C 1.47419 * 119.99686 * 184.56988 * 15 5 4 18 18 C 1.36098 * 126.44803 * 174.40864 * 17 15 5 19 19 O 1.34262 * 106.94674 * 180.02562 * 18 17 15 20 20 C 1.34051 * 108.22742 * 359.97438 * 19 18 17 21 21 C 1.50695 * 125.37436 * 179.97438 * 20 19 18 22 22 C 1.53001 * 117.50238 * 351.28040 * 21 20 19 23 23 C 1.53000 * 117.50123 * 59.94081 * 21 20 19 24 24 N 1.29932 * 109.24637 * 0.26441 * 20 19 18 25 25 H 1.09004 * 109.46966 * 60.00721 * 1 2 3 26 26 H 1.09000 * 109.47230 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47671 * 300.00561 * 1 2 3 28 28 H 1.08998 * 109.46954 * 239.99507 * 2 1 3 29 29 H 1.09005 * 109.46547 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.46872 * 299.99158 * 3 2 1 31 31 H 1.08998 * 109.47839 * 60.00049 * 3 2 1 32 32 H 1.08994 * 109.47460 * 305.00250 * 4 2 1 33 33 H 1.08994 * 109.46837 * 184.99880 * 4 2 1 34 34 H 1.09011 * 109.47065 * 24.27027 * 6 5 4 35 35 H 1.08996 * 109.47449 * 144.27140 * 6 5 4 36 36 H 0.96998 * 119.99415 * 180.02562 * 10 9 7 37 37 H 1.07995 * 126.52493 * 0.03043 * 18 17 15 38 38 H 1.09005 * 115.55209 * 205.60584 * 21 20 19 39 39 H 1.09000 * 117.49873 * 215.00436 * 22 21 20 40 40 H 1.09004 * 117.49787 * 0.02562 * 22 21 20 41 41 H 1.09005 * 117.49652 * 359.97236 * 23 21 20 42 42 H 1.08998 * 117.50182 * 144.97370 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 7 1.6524 -2.1328 1.1907 6 6 0.4304 -2.5853 1.8602 7 6 0.7753 -3.1248 3.2244 8 1 1.8021 -3.1304 3.5591 9 6 -0.2199 -3.6121 4.0448 10 7 -1.4702 -3.6057 3.6370 11 14 0.2077 -4.2815 5.7355 12 1 0.1486 -3.1824 6.7325 13 1 -0.7636 -5.3410 6.1086 14 1 1.5780 -4.8530 5.7096 15 6 2.4201 -3.0150 0.5209 16 8 3.4763 -2.6568 0.0361 17 6 1.9795 -4.4144 0.3761 18 6 2.5922 -5.3832 -0.3574 19 8 1.8639 -6.5020 -0.2144 20 6 0.8269 -6.2273 0.5895 21 6 -0.2370 -7.2092 1.0075 22 6 -0.2486 -8.5747 0.3172 23 6 0.2131 -8.4559 1.7718 24 7 0.8807 -4.9791 0.9465 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9562 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6053 -0.2616 2.1370 33 1 3.1262 -0.6442 1.2953 34 1 -0.2585 -1.7469 1.9645 35 1 -0.0394 -3.3700 1.2673 36 1 -2.1704 -3.9482 4.2144 37 1 3.4929 -5.2731 -0.9430 38 1 -1.1991 -6.7736 1.2773 39 1 -1.2183 -9.0372 0.1329 40 1 0.5136 -8.7629 -0.4389 41 1 1.2790 -8.5660 1.9720 42 1 -0.4525 -8.8401 2.5447 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777243017.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:26:51 Heat of formation + Delta-G solvation = -2.120733 kcal Electronic energy + Delta-G solvation = -24338.412263 eV Core-core repulsion = 20899.738429 eV Total energy + Delta-G solvation = -3438.673833 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.31756 -40.73553 -38.07634 -37.59908 -36.11854 -35.17033 -34.02507 -31.19247 -29.38536 -28.00472 -27.55178 -25.28870 -24.96668 -23.98516 -23.26684 -22.12730 -21.09501 -20.05976 -18.72808 -18.24045 -17.66538 -17.64164 -17.17346 -16.56352 -16.32760 -16.00680 -15.88869 -15.38920 -14.69102 -14.57388 -14.44392 -14.09717 -13.70242 -13.53845 -13.32799 -13.05787 -12.95673 -12.73603 -12.60758 -12.45577 -12.42119 -12.17196 -12.10425 -11.90401 -11.66015 -11.62182 -11.52407 -11.50300 -11.16889 -10.87558 -10.29456 -9.84070 -9.34092 -8.04329 -6.11434 0.16855 1.12844 1.37433 1.39042 1.47914 1.63536 2.22647 2.36474 2.48944 2.80321 3.06973 3.27284 3.65600 3.77479 3.94735 3.95379 4.01470 4.04804 4.17544 4.23527 4.57483 4.61720 4.64854 4.73375 4.76041 4.79156 4.87061 4.92918 4.98873 5.01312 5.05893 5.10167 5.11377 5.19846 5.21394 5.40075 5.44476 5.56581 5.89243 5.95268 6.27840 6.52320 6.72164 6.97504 7.25273 7.53236 9.02682 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.011795 B = 0.006949 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.254862 B = 4028.254722 C = 5575.058103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.103 4.103 3 C -0.133 4.133 4 C 0.119 3.881 5 N -0.580 5.580 6 C 0.246 3.754 7 C -0.516 4.516 8 H 0.028 0.972 9 C 0.035 3.965 10 N -0.910 5.910 11 Si 0.938 3.062 12 H -0.277 1.277 13 H -0.275 1.275 14 H -0.285 1.285 15 C 0.588 3.412 16 O -0.588 6.588 17 C -0.095 4.095 18 C 0.012 3.988 19 O -0.195 6.195 20 C 0.204 3.796 21 C -0.095 4.095 22 C -0.132 4.132 23 C -0.156 4.156 24 N -0.433 5.433 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.014 0.986 35 H 0.068 0.932 36 H 0.262 0.738 37 H 0.260 0.740 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.083 -4.655 -8.125 9.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 C -0.191 4.191 4 C -0.003 4.003 5 N -0.307 5.307 6 C 0.125 3.875 7 C -0.555 4.555 8 H 0.046 0.954 9 C -0.165 4.165 10 N -0.550 5.550 11 Si 0.765 3.235 12 H -0.203 1.203 13 H -0.200 1.200 14 H -0.211 1.211 15 C 0.377 3.623 16 O -0.471 6.471 17 C -0.214 4.214 18 C -0.062 4.062 19 O -0.082 6.082 20 C -0.004 4.004 21 C -0.114 4.114 22 C -0.169 4.169 23 C -0.194 4.194 24 N -0.161 5.161 25 H 0.088 0.912 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.032 0.968 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.276 0.724 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.126 0.874 41 H 0.112 0.888 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.947 -4.184 -7.888 9.139 hybrid contribution 0.634 -0.370 0.910 1.169 sum 2.581 -4.554 -6.978 8.723 Atomic orbital electron populations 1.21800 0.94878 1.00897 1.02043 1.21411 0.96329 0.97512 0.96970 1.21697 1.01092 0.93479 1.02853 1.21611 0.99894 0.80017 0.98816 1.48143 1.25663 1.07980 1.48946 1.19614 0.80647 0.95167 0.92033 1.21309 0.92401 1.40849 1.00895 0.95398 1.25283 0.94817 0.95853 1.00498 1.70006 0.99951 1.47423 1.37575 0.85889 0.77515 0.78522 0.81579 1.20318 1.20015 1.21069 1.17070 0.83168 0.83641 0.78418 1.90658 1.23728 1.79814 1.52948 1.21939 0.97183 0.97365 1.04928 1.25647 0.97936 0.81854 1.00720 1.84291 1.32956 1.36707 1.54217 1.25959 0.89825 0.92598 0.92028 1.20319 0.94732 0.86935 1.09416 1.23230 1.05170 0.93423 0.95106 1.23204 1.02823 0.96688 0.96647 1.71424 1.18068 1.06061 1.20544 0.91164 0.94909 0.92647 0.92727 0.92326 0.90974 0.91814 0.90576 0.91478 0.96802 0.91458 0.92905 0.72414 0.84781 0.84836 0.87421 0.88796 0.85927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.55 8.34 71.98 0.60 -3.95 16 2 C -0.10 -3.36 3.09 -10.79 -0.03 -3.40 16 3 C -0.13 -3.32 9.19 71.98 0.66 -2.66 16 4 C 0.12 4.68 4.80 86.38 0.41 5.10 16 5 N -0.58 -26.88 2.21 -830.03 -1.84 -28.71 16 6 C 0.25 12.76 3.68 85.64 0.31 13.07 16 7 C -0.52 -29.00 8.57 25.60 0.22 -28.78 16 8 H 0.03 1.65 7.81 -2.91 -0.02 1.63 16 9 C 0.04 1.96 5.46 84.65 0.46 2.42 16 10 N -0.91 -51.46 13.29 21.45 0.28 -51.17 16 11 Si 0.94 44.32 29.54 68.60 2.03 46.34 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 14 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 15 C 0.59 27.23 7.58 86.66 0.66 27.89 16 16 O -0.59 -27.35 16.53 -4.07 -0.07 -27.42 16 17 C -0.09 -4.09 6.67 40.41 0.27 -3.82 16 18 C 0.01 0.42 11.95 67.32 0.80 1.22 16 19 O -0.19 -6.36 10.40 0.32 0.00 -6.36 16 20 C 0.20 7.62 7.80 88.39 0.69 8.31 16 21 C -0.09 -2.84 6.33 -11.54 -0.07 -2.92 16 22 C -0.13 -2.59 10.16 30.62 0.31 -2.28 16 23 C -0.16 -3.64 10.24 30.62 0.31 -3.33 16 24 N -0.43 -19.73 7.22 -293.03 -2.11 -21.85 16 25 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 26 H 0.03 1.26 6.40 -2.39 -0.02 1.24 16 27 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 2.99 8.03 -2.39 -0.02 2.97 16 33 H 0.07 2.64 7.52 -2.39 -0.02 2.62 16 34 H 0.01 0.76 6.83 -2.38 -0.02 0.74 16 35 H 0.07 3.73 5.18 -2.39 -0.01 3.72 16 36 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 37 H 0.26 6.38 8.06 -2.91 -0.02 6.36 16 38 H 0.13 4.35 8.14 -2.38 -0.02 4.33 16 39 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.11 1.99 7.94 -2.38 -0.02 1.97 16 41 H 0.09 2.26 8.14 -2.38 -0.02 2.25 16 42 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -68.65 351.86 4.92 -63.73 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 1.01 Total: 18.55 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 5.61 Total: 6.88 kcal Atomic # 7 Polarization: -98.07 SS G_CDS: -3.66 Total: -101.73 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -0.06 Total: -33.78 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -68.65 4.92 -63.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777243017.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.614 kcal (2) G-P(sol) polarization free energy of solvation -68.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds