Wall clock time and date at job start Tue Mar 31 2020 06:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47345 * 2 1 4 4 C 1.50700 * 109.46964 * 239.99882 * 2 1 3 5 5 O 1.34259 * 126.52644 * 60.02784 * 4 2 1 6 6 C 1.34053 * 108.22694 * 180.02562 * 5 4 2 7 7 N 1.29927 * 109.24161 * 359.97438 * 6 5 4 8 8 C 1.36066 * 108.48234 * 359.73592 * 7 6 5 9 9 C 1.47418 * 126.45361 * 180.30009 * 8 7 6 10 10 O 1.21611 * 120.00603 * 186.57023 * 9 8 7 11 11 N 1.34787 * 119.99848 * 6.56915 * 9 8 7 12 12 C 1.46930 * 120.62874 * 6.86214 * 11 9 8 13 13 C 1.53618 * 108.54230 * 126.36871 * 12 11 9 14 14 C 1.53039 * 109.24391 * 54.85621 * 13 12 11 15 15 C 1.50701 * 109.45395 * 178.49800 * 14 13 12 16 16 H 1.08003 * 120.00290 * 120.05606 * 15 14 13 17 17 C 1.37874 * 119.99689 * 300.06247 * 15 14 13 18 18 N 1.31514 * 120.00019 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00006 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47303 * 90.00192 * 19 17 15 21 21 H 1.48505 * 109.47003 * 209.99981 * 19 17 15 22 22 H 1.48495 * 109.47334 * 329.99980 * 19 17 15 23 23 C 1.53041 * 109.53629 * 298.51187 * 14 13 12 24 24 C 1.46918 * 120.63005 * 187.14478 * 11 9 8 25 25 H 1.09001 * 109.47232 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47173 * 59.99691 * 1 2 3 27 27 H 1.09003 * 109.47172 * 300.00143 * 1 2 3 28 28 H 1.09002 * 109.47173 * 120.00308 * 2 1 3 29 29 H 1.09001 * 109.47221 * 60.00589 * 3 2 1 30 30 H 1.09005 * 109.46882 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.46866 * 299.99613 * 3 2 1 32 32 H 1.07996 * 125.37347 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.58522 * 246.20619 * 12 11 9 34 34 H 1.09001 * 109.58614 * 6.62479 * 12 11 9 35 35 H 1.09003 * 109.63795 * 294.86455 * 13 12 11 36 36 H 1.09001 * 109.43339 * 174.72438 * 13 12 11 37 37 H 1.09001 * 109.46003 * 58.52676 * 14 13 12 38 38 H 0.97000 * 120.00092 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.50058 * 301.40878 * 23 14 13 40 40 H 1.09007 * 109.50014 * 181.31299 * 23 14 13 41 41 H 1.08999 * 109.58977 * 353.36930 * 24 11 9 42 42 H 1.09001 * 109.58780 * 113.65861 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 1.7904 -0.3676 -2.5058 6 6 2.4124 -1.2487 -3.3020 7 7 3.0316 -2.1250 -2.5694 8 6 2.8225 -1.8180 -1.2604 9 6 3.3497 -2.5496 -0.0941 10 8 2.9926 -2.2442 1.0275 11 7 4.2274 -3.5570 -0.2710 12 6 4.7831 -3.8409 -1.6012 13 6 6.3158 -3.8507 -1.4985 14 6 6.7423 -4.8434 -0.4147 15 6 8.2467 -4.8841 -0.3353 16 1 8.7462 -4.6221 0.5858 17 6 8.9854 -5.2556 -1.4385 18 7 10.2983 -5.2907 -1.3695 19 14 8.1215 -5.7093 -3.0314 20 1 7.9499 -4.4926 -3.8654 21 1 8.9378 -6.7053 -3.7710 22 1 6.7900 -6.2907 -2.7243 23 6 6.1722 -4.4031 0.9356 24 6 4.6421 -4.3960 0.8616 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 2.4007 -1.2324 -4.3818 33 1 4.4308 -4.8136 -1.9443 34 1 4.4673 -3.0678 -2.3017 35 1 6.6720 -2.8537 -1.2391 36 1 6.7415 -4.1520 -2.4556 37 1 6.3648 -5.8356 -0.6621 38 1 10.8180 -5.5524 -2.1455 39 1 6.5297 -3.4010 1.1721 40 1 6.4957 -5.0976 1.7111 41 1 4.2334 -3.9893 1.7866 42 1 4.2765 -5.4126 0.7164 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782052843.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:49 Heat of formation + Delta-G solvation = -9.721942 kcal Electronic energy + Delta-G solvation = -24247.051567 eV Core-core repulsion = 20808.048120 eV Total energy + Delta-G solvation = -3439.003447 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -43.60957 -39.67182 -37.13666 -35.81835 -34.99420 -33.41839 -31.47541 -30.53731 -29.70460 -27.44573 -26.60887 -24.38823 -23.62644 -22.57247 -22.31038 -20.87469 -20.00366 -18.89549 -17.32366 -16.92669 -16.73399 -16.47717 -15.74705 -15.09959 -14.95180 -14.84914 -14.48129 -13.87640 -13.54187 -13.45223 -13.38291 -13.03306 -12.65558 -12.59703 -12.48480 -12.19159 -11.94405 -11.68858 -11.52978 -11.43845 -11.27917 -11.01041 -10.70695 -10.54355 -10.14342 -10.00492 -9.74086 -9.53600 -9.21093 -9.08203 -8.93924 -8.51409 -8.12194 -6.06273 -4.05115 1.02918 1.96174 2.41930 3.21471 3.27058 3.37577 3.39708 3.40537 3.93047 4.33563 4.41301 4.57447 4.79320 4.81560 5.04923 5.24798 5.32349 5.34194 5.47921 5.52424 5.54527 5.63040 5.69559 5.77051 5.81461 5.85902 5.92320 5.94542 5.99173 6.08253 6.21038 6.37312 6.62291 6.68819 6.72853 6.83194 6.98532 7.24899 7.33942 7.54042 7.74921 7.78281 8.33018 8.53569 8.97883 9.56254 11.07122 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.024068 B = 0.004493 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.098800 B = 6230.876578 C = 6829.862284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.029 4.029 3 C -0.147 4.147 4 C 0.048 3.952 5 O -0.198 6.198 6 C 0.169 3.831 7 N -0.455 5.455 8 C -0.065 4.065 9 C 0.597 3.403 10 O -0.549 6.549 11 N -0.580 5.580 12 C 0.075 3.925 13 C -0.132 4.132 14 C 0.012 3.988 15 C -0.512 4.512 16 H 0.073 0.927 17 C 0.068 3.932 18 N -0.902 5.902 19 Si 0.886 3.114 20 H -0.278 1.278 21 H -0.298 1.298 22 H -0.264 1.264 23 C -0.112 4.112 24 C 0.108 3.892 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.135 0.865 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.254 0.746 33 H 0.058 0.942 34 H 0.127 0.873 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.028 0.972 38 H 0.263 0.737 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.097 10.544 -2.395 22.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.047 4.047 3 C -0.204 4.204 4 C -0.009 4.009 5 O -0.084 6.084 6 C -0.059 4.059 7 N -0.185 5.185 8 C -0.185 4.185 9 C 0.384 3.616 10 O -0.429 6.429 11 N -0.310 5.310 12 C -0.047 4.047 13 C -0.170 4.170 14 C -0.007 4.007 15 C -0.550 4.550 16 H 0.091 0.909 17 C -0.133 4.133 18 N -0.541 5.541 19 Si 0.717 3.283 20 H -0.205 1.205 21 H -0.226 1.226 22 H -0.189 1.189 23 C -0.150 4.150 24 C -0.014 4.014 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.153 0.847 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.270 0.730 33 H 0.076 0.924 34 H 0.144 0.856 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.753 10.144 -2.141 22.308 hybrid contribution -0.423 0.104 -1.207 1.283 sum -20.176 10.248 -3.349 22.876 Atomic orbital electron populations 1.21837 0.93232 1.02565 1.02547 1.20314 0.96662 0.96330 0.91407 1.21864 1.01823 0.94148 1.02582 1.23743 0.97466 0.95599 0.84056 1.84337 1.59095 1.48724 1.16221 1.28195 0.93081 0.85610 0.98967 1.70692 1.20473 1.25626 1.01659 1.21555 1.05602 0.99332 0.91983 1.16766 0.79138 0.79652 0.86010 1.90679 1.61611 1.67058 1.23580 1.47946 1.41459 1.30449 1.11160 1.22864 0.95264 1.03218 0.83376 1.22415 0.92169 1.01809 1.00595 1.19164 0.96816 0.93981 0.90705 1.21061 0.88772 1.45631 0.99527 0.90890 1.25035 0.94669 0.94861 0.98748 1.69905 1.05040 1.48573 1.30554 0.86860 0.79717 0.77864 0.83888 1.20536 1.22561 1.18941 1.21815 0.91556 1.01732 0.99887 1.21850 0.97155 0.93565 0.88847 0.92166 0.92353 0.91162 0.84708 0.91120 0.92041 0.92312 0.73044 0.92374 0.85603 0.92065 0.92557 0.95446 0.92719 0.92278 0.91284 0.89729 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.18 37.16 0.34 -0.91 16 2 C -0.03 -0.32 3.24 -91.77 -0.30 -0.61 16 3 C -0.15 -1.34 9.18 37.16 0.34 -1.00 16 4 C 0.05 0.61 5.94 -35.08 -0.21 0.41 16 5 O -0.20 -2.17 10.73 6.50 0.07 -2.10 16 6 C 0.17 1.69 13.19 51.96 0.69 2.38 16 7 N -0.46 -6.41 7.82 -11.49 -0.09 -6.50 16 8 C -0.07 -1.01 6.67 -83.02 -0.55 -1.56 16 9 C 0.60 10.60 7.67 -12.52 -0.10 10.51 16 10 O -0.55 -10.20 13.92 5.27 0.07 -10.12 16 11 N -0.58 -10.65 2.97 -173.77 -0.52 -11.16 16 12 C 0.07 1.40 6.14 -3.49 -0.02 1.38 16 13 C -0.13 -2.88 4.86 -26.39 -0.13 -3.01 16 14 C 0.01 0.29 1.65 -91.73 -0.15 0.14 16 15 C -0.51 -14.37 9.14 -34.44 -0.31 -14.68 16 16 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 17 C 0.07 1.96 5.45 -17.82 -0.10 1.87 16 18 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 19 Si 0.89 21.84 24.38 -169.99 -4.14 17.69 16 20 H -0.28 -6.65 6.86 56.52 0.39 -6.26 16 21 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.26 -6.20 6.53 56.52 0.37 -5.83 16 23 C -0.11 -2.26 5.30 -26.61 -0.14 -2.40 16 24 C 0.11 1.91 6.44 -3.71 -0.02 1.89 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.14 1.75 5.55 -51.93 -0.29 1.46 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.25 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.13 2.23 4.09 -61.26 -0.25 1.97 16 35 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.06 1.29 3.24 -51.93 -0.17 1.12 16 37 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.08 1.45 7.00 -51.93 -0.36 1.08 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 329.31 15.07 4.96 4.96 Total: -1.00 -32.94 329.31 -5.66 -38.59 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.12 Total: 1.20 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -0.67 Total: -5.62 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: 0.17 Total: -44.61 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.14 Total: -12.22 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.14 Total: 17.69 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.94 -5.66 -38.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782052843.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.870 kcal (2) G-P(sol) polarization free energy of solvation -32.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds