Wall clock time and date at job start Tue Mar 31 2020 06:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46946 * 2 1 4 4 O 1.42898 * 109.47298 * 240.00404 * 2 1 3 5 5 C 1.50696 * 109.47207 * 119.99724 * 2 1 3 6 6 C 1.38238 * 119.99728 * 150.00400 * 5 2 1 7 7 C 1.38235 * 120.00108 * 180.02562 * 6 5 2 8 8 C 1.38243 * 119.99617 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99586 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.47014 * 89.99954 * 9 8 7 11 11 C 1.34770 * 119.99664 * 179.97438 * 10 9 8 12 12 O 1.21586 * 120.00557 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99516 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99494 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.46754 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99951 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99976 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99822 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99907 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47444 * 90.00171 * 19 17 15 21 21 H 1.48505 * 109.47075 * 209.99758 * 19 17 15 22 22 H 1.48495 * 109.47492 * 329.99599 * 19 17 15 23 23 C 1.38233 * 120.00248 * 0.25361 * 8 7 6 24 24 C 1.38234 * 120.00209 * 330.02806 * 5 2 1 25 25 H 1.08997 * 109.47348 * 299.99365 * 1 2 3 26 26 H 1.09001 * 109.47359 * 60.00058 * 1 2 3 27 27 H 1.09002 * 109.46939 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47351 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47044 * 300.00134 * 3 2 1 30 30 H 1.09006 * 109.47112 * 59.99581 * 3 2 1 31 31 H 0.96708 * 113.99704 * 299.99281 * 4 2 1 32 32 H 1.08000 * 120.00578 * 359.97438 * 6 5 2 33 33 H 1.07999 * 120.00165 * 179.97438 * 7 6 5 34 34 H 1.09000 * 109.46646 * 209.99280 * 9 8 7 35 35 H 1.09000 * 109.47248 * 329.99998 * 9 8 7 36 36 H 0.97000 * 120.00105 * 359.97438 * 10 9 8 37 37 H 0.97000 * 120.00253 * 359.97438 * 13 11 10 38 38 H 1.08996 * 109.47213 * 299.99774 * 14 13 11 39 39 H 1.08998 * 109.47473 * 60.00312 * 14 13 11 40 40 H 0.97003 * 119.99476 * 180.02562 * 18 17 15 41 41 H 1.08004 * 119.99934 * 179.72684 * 23 8 7 42 42 H 1.07999 * 120.00005 * 359.97438 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.0323 -0.7103 1.2305 6 6 3.2403 -1.3817 1.1962 7 6 3.7009 -2.0337 2.3247 8 6 2.9533 -2.0149 3.4874 9 6 3.4552 -2.7262 4.7175 10 7 4.2687 -1.8060 5.5160 11 6 4.8256 -2.2261 6.6691 12 8 4.6533 -3.3690 7.0465 13 7 5.5736 -1.3793 7.4039 14 6 6.1795 -1.8362 8.6572 15 6 6.9590 -0.7065 9.2793 16 1 6.9995 0.2554 8.7900 17 6 7.6214 -0.9013 10.4728 18 7 7.5734 -2.0731 11.0678 19 14 8.5871 0.4993 11.2443 20 1 7.6996 1.2730 12.1492 21 1 9.7255 -0.0535 12.0214 22 1 9.1041 1.3917 10.1760 23 6 1.7426 -1.3484 3.5199 24 6 1.2850 -0.6910 2.3932 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.7211 -1.5952 -1.2329 32 1 3.8238 -1.3975 0.2876 33 1 4.6444 -2.5585 2.2978 34 1 2.6071 -3.0692 5.3102 35 1 4.0609 -3.5823 4.4204 36 1 4.4065 -0.8943 5.2148 37 1 5.7114 -0.4676 7.1027 38 1 5.3961 -2.1586 9.3431 39 1 6.8502 -2.6709 8.4534 40 1 8.0391 -2.2099 11.9077 41 1 1.1565 -1.3374 4.4270 42 1 0.3413 -0.1665 2.4200 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787354677.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:59 Heat of formation + Delta-G solvation = -69.090065 kcal Electronic energy + Delta-G solvation = -22232.559165 eV Core-core repulsion = 18790.981324 eV Total energy + Delta-G solvation = -3441.577842 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -40.34563 -39.13781 -37.74715 -34.76787 -33.98579 -33.01240 -32.26208 -31.17745 -30.36793 -27.78518 -27.35250 -25.66213 -22.94555 -22.65901 -22.00639 -20.40474 -20.14962 -18.18455 -17.88449 -16.51028 -15.95417 -15.72251 -15.59067 -15.08463 -14.99381 -14.62913 -14.54358 -14.20378 -13.75399 -13.49598 -13.24432 -13.03995 -12.88237 -12.70751 -12.53815 -12.33557 -12.12286 -11.95132 -11.72728 -11.67499 -11.36622 -11.01198 -10.93502 -10.86581 -10.41126 -10.28526 -9.50088 -9.35039 -9.15349 -8.87733 -8.76943 -8.65765 -7.73360 -6.13535 -4.19940 0.95073 1.17487 3.24472 3.26027 3.32355 3.35092 3.74689 3.78464 3.97362 4.19190 4.35123 4.45153 4.61738 4.66718 4.72106 4.80999 5.13457 5.17768 5.20204 5.22534 5.24059 5.33276 5.42450 5.46367 5.57617 5.65906 5.70328 5.81710 5.86560 5.87875 6.14753 6.27733 6.43818 6.72653 6.85681 7.14605 7.23694 7.54020 7.57726 7.59596 7.93237 8.06792 8.78779 8.96752 9.35483 9.50302 10.96741 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028412 B = 0.002421 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.275213 B =11560.767044 C =12065.558620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.169 3.831 3 C -0.135 4.135 4 O -0.556 6.556 5 C -0.117 4.117 6 C -0.106 4.106 7 C -0.100 4.100 8 C -0.097 4.097 9 C 0.181 3.819 10 N -0.754 5.754 11 C 0.693 3.307 12 O -0.602 6.602 13 N -0.729 5.729 14 C 0.267 3.733 15 C -0.541 4.541 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.886 5.886 19 Si 0.904 3.096 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.101 4.101 24 C -0.115 4.115 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.378 0.622 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.392 0.608 37 H 0.386 0.614 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.265 0.735 41 H 0.126 0.874 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.250 5.163 -23.800 28.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.128 3.872 3 C -0.192 4.192 4 O -0.362 6.362 5 C -0.117 4.117 6 C -0.124 4.124 7 C -0.119 4.119 8 C -0.098 4.098 9 C 0.056 3.944 10 N -0.411 5.411 11 C 0.392 3.608 12 O -0.481 6.481 13 N -0.381 5.381 14 C 0.146 3.854 15 C -0.580 4.580 16 H 0.080 0.920 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.119 4.119 24 C -0.133 4.133 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.225 0.775 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.225 0.775 37 H 0.218 0.782 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.144 0.856 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.037 4.551 -23.324 27.600 hybrid contribution 0.392 0.970 0.410 1.124 sum -13.645 5.521 -22.914 27.234 Atomic orbital electron populations 1.22550 0.95168 1.02804 1.03018 1.19989 0.92496 0.92471 0.82209 1.21756 1.02306 0.92667 1.02521 1.86552 1.77260 1.29155 1.43205 1.20524 0.95799 0.99417 0.95982 1.20996 0.95533 0.97277 0.98626 1.21167 0.99533 0.98846 0.92313 1.20051 0.95234 0.99170 0.95315 1.19913 0.94885 0.91407 0.88149 1.45182 1.56618 1.15300 1.24044 1.16154 0.79371 0.85303 0.79928 1.90872 1.66559 1.18351 1.72292 1.45721 1.52885 1.13717 1.25820 1.18980 0.92629 0.95489 0.78335 1.21231 1.32160 0.97573 1.07007 0.91968 1.24948 0.96364 0.96049 0.96714 1.69983 1.42488 1.22247 1.17581 0.86411 0.79469 0.81713 0.79267 1.20493 1.21018 1.19793 1.21138 0.95767 0.96622 0.98379 1.21074 0.99843 0.99865 0.92516 0.91092 0.91497 0.92013 0.91637 0.91612 0.90945 0.77482 0.85390 0.85608 0.91130 0.91120 0.77499 0.78168 0.95745 0.95740 0.92482 0.85613 0.85730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.00 8.12 37.16 0.30 -0.69 16 2 C 0.17 1.20 1.24 -91.77 -0.11 1.09 16 3 C -0.14 -0.96 8.82 37.16 0.33 -0.63 16 4 O -0.56 -4.20 11.97 -35.23 -0.42 -4.62 16 5 C -0.12 -0.97 4.81 -104.63 -0.50 -1.47 16 6 C -0.11 -0.95 9.35 -39.58 -0.37 -1.32 16 7 C -0.10 -0.99 9.70 -39.58 -0.38 -1.37 16 8 C -0.10 -1.03 5.25 -104.62 -0.55 -1.58 16 9 C 0.18 2.41 5.80 -5.19 -0.03 2.38 16 10 N -0.75 -11.55 5.55 -66.41 -0.37 -11.92 16 11 C 0.69 14.58 8.57 -86.92 -0.74 13.83 16 12 O -0.60 -15.28 16.34 5.29 0.09 -15.20 16 13 N -0.73 -15.93 5.55 -66.41 -0.37 -16.30 16 14 C 0.27 7.25 5.43 -5.19 -0.03 7.22 16 15 C -0.54 -14.90 9.28 -34.44 -0.32 -15.22 16 16 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 19 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 20 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 C -0.10 -0.96 9.70 -39.58 -0.38 -1.35 16 24 C -0.12 -0.96 9.14 -39.58 -0.36 -1.32 16 25 H 0.07 0.35 6.51 -51.93 -0.34 0.01 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.38 1.75 9.04 45.56 0.41 2.16 16 32 H 0.13 1.06 7.48 -52.49 -0.39 0.67 16 33 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 35 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 36 H 0.39 5.04 8.48 -40.82 -0.35 4.69 16 37 H 0.39 7.23 8.34 -40.82 -0.34 6.89 16 38 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 42 H 0.12 0.81 6.17 -52.49 -0.32 0.48 16 LS Contribution 355.41 15.07 5.36 5.36 Total: -1.00 -33.93 355.41 -8.76 -42.69 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -5.51 Total: 8.38 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -3.26 Total: 1.23 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.00 Total: -53.86 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.34 Total: -19.82 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.93 -8.76 -42.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787354677.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.397 kcal (2) G-P(sol) polarization free energy of solvation -33.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds