Wall clock time and date at job start Tue Mar 31 2020 06:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46946 * 2 1 4 4 O 1.42898 * 109.47298 * 240.00404 * 2 1 3 5 5 C 1.50696 * 109.47207 * 119.99724 * 2 1 3 6 6 C 1.38238 * 119.99728 * 150.00400 * 5 2 1 7 7 C 1.38235 * 120.00108 * 180.02562 * 6 5 2 8 8 C 1.38243 * 119.99617 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99586 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.47014 * 89.99954 * 9 8 7 11 11 C 1.34770 * 119.99664 * 179.97438 * 10 9 8 12 12 O 1.21586 * 120.00557 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99516 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99494 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.46754 * 179.97438 * 14 13 11 16 16 H 1.08003 * 119.99951 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99976 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99822 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99907 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47444 * 90.00171 * 19 17 15 21 21 H 1.48505 * 109.47075 * 209.99758 * 19 17 15 22 22 H 1.48495 * 109.47492 * 329.99599 * 19 17 15 23 23 C 1.38233 * 120.00248 * 0.25361 * 8 7 6 24 24 C 1.38234 * 120.00209 * 330.02806 * 5 2 1 25 25 H 1.08997 * 109.47348 * 299.99365 * 1 2 3 26 26 H 1.09001 * 109.47359 * 60.00058 * 1 2 3 27 27 H 1.09002 * 109.46939 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47351 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47044 * 300.00134 * 3 2 1 30 30 H 1.09006 * 109.47112 * 59.99581 * 3 2 1 31 31 H 0.96708 * 113.99704 * 299.99281 * 4 2 1 32 32 H 1.08000 * 120.00578 * 359.97438 * 6 5 2 33 33 H 1.07999 * 120.00165 * 179.97438 * 7 6 5 34 34 H 1.09000 * 109.46646 * 209.99280 * 9 8 7 35 35 H 1.09000 * 109.47248 * 329.99998 * 9 8 7 36 36 H 0.97000 * 120.00105 * 359.97438 * 10 9 8 37 37 H 0.97000 * 120.00253 * 359.97438 * 13 11 10 38 38 H 1.08996 * 109.47213 * 299.99774 * 14 13 11 39 39 H 1.08998 * 109.47473 * 60.00312 * 14 13 11 40 40 H 0.97003 * 119.99476 * 180.02562 * 18 17 15 41 41 H 1.08004 * 119.99934 * 179.72684 * 23 8 7 42 42 H 1.07999 * 120.00005 * 359.97438 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.0323 -0.7103 1.2305 6 6 3.2403 -1.3817 1.1962 7 6 3.7009 -2.0337 2.3247 8 6 2.9533 -2.0149 3.4874 9 6 3.4552 -2.7262 4.7175 10 7 4.2687 -1.8060 5.5160 11 6 4.8256 -2.2261 6.6691 12 8 4.6533 -3.3690 7.0465 13 7 5.5736 -1.3793 7.4039 14 6 6.1795 -1.8362 8.6572 15 6 6.9590 -0.7065 9.2793 16 1 6.9995 0.2554 8.7900 17 6 7.6214 -0.9013 10.4728 18 7 7.5734 -2.0731 11.0678 19 14 8.5871 0.4993 11.2443 20 1 7.6996 1.2730 12.1492 21 1 9.7255 -0.0535 12.0214 22 1 9.1041 1.3917 10.1760 23 6 1.7426 -1.3484 3.5199 24 6 1.2850 -0.6910 2.3932 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 1.7211 -1.5952 -1.2329 32 1 3.8238 -1.3975 0.2876 33 1 4.6444 -2.5585 2.2978 34 1 2.6071 -3.0692 5.3102 35 1 4.0609 -3.5823 4.4204 36 1 4.4065 -0.8943 5.2148 37 1 5.7114 -0.4676 7.1027 38 1 5.3961 -2.1586 9.3431 39 1 6.8502 -2.6709 8.4534 40 1 8.0391 -2.2099 11.9077 41 1 1.1565 -1.3374 4.4270 42 1 0.3413 -0.1665 2.4200 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787354677.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:56 Heat of formation + Delta-G solvation = -94.573339 kcal Electronic energy + Delta-G solvation = -22233.664203 eV Core-core repulsion = 18790.981324 eV Total energy + Delta-G solvation = -3442.682879 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 3.58 seconds Orbital eigenvalues (eV) -41.19198 -40.63446 -38.48486 -36.30186 -35.69608 -34.36990 -33.66973 -31.93843 -31.28743 -29.21737 -28.25635 -26.87564 -24.57609 -23.58043 -22.96259 -21.88847 -21.04833 -19.87007 -18.56906 -18.10571 -17.48021 -16.87092 -16.61932 -16.42703 -16.14460 -15.74235 -15.55015 -15.28431 -14.97994 -14.62233 -14.45245 -14.30490 -14.02408 -13.78245 -13.53084 -13.29409 -13.08998 -12.93832 -12.89687 -12.70319 -12.65183 -12.48567 -12.21934 -12.03769 -11.63161 -11.47120 -11.30551 -10.97997 -10.80053 -10.30047 -9.86516 -9.67501 -9.59415 -8.27810 -6.44204 0.18154 0.46103 1.43857 1.46682 1.57690 1.93998 2.23533 2.40052 2.80143 3.07072 3.30343 3.53843 3.60717 3.77119 3.86591 4.04216 4.10674 4.19864 4.39029 4.50437 4.65260 4.71288 4.75098 4.86493 4.88258 4.94737 5.07062 5.08861 5.14480 5.22225 5.27798 5.31436 5.43806 5.47061 5.50122 5.60227 5.65184 5.67761 5.85626 6.01277 6.25188 6.67446 6.82129 7.24686 7.30079 7.71118 8.84563 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.028412 B = 0.002421 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.275213 B =11560.767044 C =12065.558620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.168 3.832 3 C -0.138 4.138 4 O -0.569 6.569 5 C -0.110 4.110 6 C -0.110 4.110 7 C -0.105 4.105 8 C -0.106 4.106 9 C 0.182 3.818 10 N -0.728 5.728 11 C 0.692 3.308 12 O -0.649 6.649 13 N -0.723 5.723 14 C 0.285 3.715 15 C -0.555 4.555 16 H 0.083 0.917 17 C 0.003 3.997 18 N -0.931 5.931 19 Si 0.987 3.013 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.256 1.256 23 C -0.104 4.104 24 C -0.112 4.112 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.389 0.611 32 H 0.134 0.866 33 H 0.127 0.873 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.408 0.592 37 H 0.404 0.596 38 H -0.014 1.014 39 H -0.014 1.014 40 H 0.269 0.731 41 H 0.132 0.868 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.887 7.672 -25.207 30.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.128 3.872 3 C -0.195 4.195 4 O -0.377 6.377 5 C -0.111 4.111 6 C -0.128 4.128 7 C -0.124 4.124 8 C -0.107 4.107 9 C 0.059 3.941 10 N -0.385 5.385 11 C 0.391 3.609 12 O -0.531 6.531 13 N -0.377 5.377 14 C 0.162 3.838 15 C -0.593 4.593 16 H 0.101 0.899 17 C -0.197 4.197 18 N -0.569 5.569 19 Si 0.809 3.191 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.180 1.180 23 C -0.122 4.122 24 C -0.130 4.130 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.238 0.762 32 H 0.152 0.848 33 H 0.144 0.856 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.244 0.756 37 H 0.240 0.760 38 H 0.004 0.996 39 H 0.004 0.996 40 H 0.078 0.922 41 H 0.150 0.850 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -14.706 7.105 -24.813 29.705 hybrid contribution 0.515 0.146 0.722 0.899 sum -14.191 7.251 -24.091 28.885 Atomic orbital electron populations 1.22527 0.93749 1.03309 1.03672 1.20049 0.93508 0.92180 0.81462 1.21798 1.01586 0.92887 1.03256 1.86530 1.77640 1.30222 1.43300 1.20743 0.95266 0.98523 0.96544 1.21092 0.95997 0.97243 0.98466 1.21215 0.99645 0.99082 0.92424 1.19767 0.96209 1.00480 0.94235 1.19974 0.94087 0.91176 0.88897 1.44976 1.55189 1.16372 1.21993 1.16306 0.79177 0.84421 0.80963 1.90839 1.68097 1.20456 1.73756 1.45314 1.53038 1.14731 1.24614 1.18418 0.90906 0.94773 0.79723 1.21596 1.32069 0.98144 1.07447 0.89881 1.26073 0.97360 0.98970 0.97248 1.70145 1.43598 1.24958 1.18204 0.85133 0.77575 0.77912 0.78434 1.19554 1.20930 1.17988 1.21261 0.95317 0.96433 0.99227 1.21300 1.00557 0.99338 0.91811 0.90156 0.91167 0.91598 0.92813 0.91133 0.90036 0.76160 0.84810 0.85552 0.91711 0.91970 0.75584 0.76050 0.99585 0.99642 0.92231 0.85037 0.83496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.46 8.12 71.98 0.58 -0.88 16 2 C 0.17 2.01 1.24 -11.54 -0.01 1.99 16 3 C -0.14 -1.66 8.82 71.98 0.64 -1.03 16 4 O -0.57 -7.49 11.97 -148.98 -1.78 -9.28 16 5 C -0.11 -1.57 4.81 -19.87 -0.10 -1.67 16 6 C -0.11 -1.80 9.35 22.27 0.21 -1.59 16 7 C -0.11 -1.96 9.70 22.27 0.22 -1.75 16 8 C -0.11 -2.15 5.25 -19.86 -0.10 -2.25 16 9 C 0.18 4.83 5.80 85.63 0.50 5.33 16 10 N -0.73 -22.00 5.55 -482.28 -2.68 -24.68 16 11 C 0.69 29.61 8.57 179.06 1.53 31.14 16 12 O -0.65 -34.25 16.34 -3.99 -0.07 -34.31 16 13 N -0.72 -31.98 5.55 -482.29 -2.68 -34.65 16 14 C 0.29 16.09 5.43 85.63 0.46 16.55 16 15 C -0.55 -30.61 9.28 25.60 0.24 -30.37 16 16 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 17 C 0.00 0.17 5.46 84.65 0.46 0.63 16 18 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 19 Si 0.99 42.62 29.54 68.60 2.03 44.64 16 20 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 21 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 23 C -0.10 -1.79 9.70 22.27 0.22 -1.58 16 24 C -0.11 -1.57 9.14 22.27 0.20 -1.37 16 25 H 0.08 0.52 6.51 -2.39 -0.02 0.51 16 26 H 0.07 0.56 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.39 2.88 9.04 -74.05 -0.67 2.21 16 32 H 0.13 2.01 7.48 -2.91 -0.02 1.99 16 33 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 34 H 0.06 1.81 8.08 -2.39 -0.02 1.79 16 35 H 0.06 1.77 8.09 -2.39 -0.02 1.75 16 36 H 0.41 9.89 8.48 -92.71 -0.79 9.10 16 37 H 0.40 14.77 8.34 -92.71 -0.77 14.00 16 38 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 39 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 40 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 41 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 42 H 0.15 1.39 6.17 -2.91 -0.02 1.37 16 Total: -1.00 -74.90 355.41 -1.03 -75.92 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: -1.18 Total: 25.58 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 5.04 Total: 13.16 kcal Atomic # 7 Polarization: -110.65 SS G_CDS: -5.07 Total: -115.72 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -1.85 Total: -43.59 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -74.90 -1.03 -75.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787354677.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.652 kcal (2) G-P(sol) polarization free energy of solvation -74.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.58 seconds