Wall clock time and date at job start Tue Mar 31 2020 07:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.47371 * 2 1 4 4 C 1.53004 * 109.47293 * 120.00485 * 2 1 3 5 5 C 1.53008 * 109.46647 * 304.99902 * 4 2 1 6 6 N 1.46499 * 109.46790 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99632 * 180.02562 * 6 5 4 8 8 O 1.21586 * 120.00230 * 0.02562 * 7 6 5 9 9 N 1.34782 * 119.99857 * 180.02562 * 7 6 5 10 10 C 1.46494 * 119.99689 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.46829 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99989 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99977 * 179.97438 * 11 10 9 14 14 N 1.31507 * 120.00020 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99880 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47208 * 89.99963 * 15 13 11 17 17 H 1.48499 * 109.46930 * 210.00100 * 15 13 11 18 18 H 1.48505 * 109.47091 * 329.99832 * 15 13 11 19 19 C 1.50706 * 109.47116 * 239.99921 * 2 1 3 20 20 C 1.38233 * 120.00109 * 269.72529 * 19 2 1 21 21 C 1.38238 * 119.99749 * 179.78525 * 20 19 2 22 22 C 1.38234 * 120.00078 * 0.44989 * 21 20 19 23 23 C 1.38238 * 120.00032 * 359.80374 * 22 21 20 24 24 C 1.38235 * 120.00123 * 359.97438 * 23 22 21 25 25 H 1.09008 * 109.47142 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47123 * 299.99378 * 1 2 3 27 27 H 1.09000 * 109.47214 * 60.00246 * 1 2 3 28 28 H 0.96691 * 114.00678 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47336 * 64.99698 * 4 2 1 30 30 H 1.08996 * 109.47426 * 185.00299 * 4 2 1 31 31 H 1.08999 * 109.47086 * 299.99949 * 5 4 2 32 32 H 1.08996 * 109.46883 * 60.00065 * 5 4 2 33 33 H 0.96998 * 120.00045 * 359.97438 * 6 5 4 34 34 H 0.96998 * 119.99820 * 359.97438 * 9 7 6 35 35 H 1.08996 * 109.47221 * 299.99796 * 10 9 7 36 36 H 1.09003 * 109.47464 * 59.99900 * 10 9 7 37 37 H 0.97000 * 119.99972 * 180.02562 * 14 13 11 38 38 H 1.08004 * 119.99934 * 0.02562 * 20 19 2 39 39 H 1.07999 * 119.99925 * 180.27297 * 21 20 19 40 40 H 1.08002 * 120.00276 * 179.83134 * 22 21 20 41 41 H 1.08000 * 120.00524 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.00181 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 1.4299 -0.0763 2.4953 6 7 1.9178 -0.7674 3.6914 7 6 1.5107 -0.3690 4.9129 8 8 0.7383 0.5635 5.0222 9 7 1.9600 -1.0045 6.0134 10 6 1.5179 -0.5711 7.3411 11 6 2.1602 -1.4390 8.3925 12 1 2.8309 -2.2337 8.1007 13 6 1.8923 -1.2180 9.7268 14 7 1.0760 -0.2501 10.0820 15 14 2.6890 -2.2934 11.0300 16 1 3.9816 -1.6920 11.4455 17 1 1.7888 -2.3940 12.2067 18 1 2.9299 -3.6490 10.4736 19 6 2.0323 -0.7105 -1.2305 20 6 2.2682 -2.0721 -1.1946 21 6 2.7247 -2.7244 -2.3246 22 6 2.9543 -2.0136 -3.4878 23 6 2.7235 -0.6511 -3.5221 24 6 2.2626 0.0006 -2.3935 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.9703 1.4236 -0.0004 29 1 1.7517 -1.7716 1.2055 30 1 3.1263 -0.6444 1.2952 31 1 1.7183 0.9739 2.5390 32 1 0.3437 -0.1533 2.4494 33 1 2.5332 -1.5121 3.6042 34 1 2.5759 -1.7487 5.9262 35 1 1.8083 0.4674 7.4997 36 1 0.4337 -0.6597 7.4100 37 1 0.8879 -0.0943 11.0208 38 1 2.0920 -2.6268 -0.2849 39 1 2.9048 -3.7890 -2.2979 40 1 3.3136 -2.5228 -4.3699 41 1 2.9025 -0.0957 -4.4309 42 1 2.0826 1.0651 -2.4202 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787359515.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:34 Heat of formation + Delta-G solvation = -65.693109 kcal Electronic energy + Delta-G solvation = -22435.799895 eV Core-core repulsion = 18994.369357 eV Total energy + Delta-G solvation = -3441.430539 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.35447 -39.10104 -37.70253 -34.89084 -33.98312 -32.92242 -32.22393 -31.21243 -30.33292 -28.55364 -26.91162 -24.65304 -23.14302 -22.58553 -21.84763 -20.45462 -20.01090 -18.13570 -17.80004 -16.62034 -16.04394 -15.91584 -15.67469 -15.19644 -14.98444 -14.69643 -14.58948 -14.13705 -13.85905 -13.64657 -13.38213 -13.03047 -12.91012 -12.59765 -12.39100 -11.99784 -11.93397 -11.87049 -11.72278 -11.55685 -11.13971 -10.93402 -10.90245 -10.84857 -10.28901 -10.27841 -9.36703 -9.33970 -9.25111 -9.08893 -8.73382 -8.62287 -7.71261 -6.12788 -4.19257 0.97774 1.07022 3.26199 3.30235 3.33500 3.38309 3.45488 3.93637 4.01333 4.22276 4.34693 4.51316 4.66856 4.69605 4.73646 4.82792 5.01844 5.15181 5.19415 5.22412 5.23130 5.34211 5.44857 5.56522 5.62641 5.72303 5.72471 5.86229 6.08894 6.11925 6.14548 6.18789 6.24962 6.65516 6.91619 7.16271 7.38811 7.55710 7.59000 7.60996 7.94685 8.07996 8.79837 8.98996 9.37650 9.52088 10.97489 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.033960 B = 0.002397 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.305215 B =11680.014255 C =12242.041883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.180 3.820 3 O -0.549 6.549 4 C -0.156 4.156 5 C 0.143 3.857 6 N -0.760 5.760 7 C 0.692 3.308 8 O -0.600 6.600 9 N -0.731 5.731 10 C 0.267 3.733 11 C -0.541 4.541 12 H 0.062 0.938 13 C 0.063 3.937 14 N -0.885 5.885 15 Si 0.904 3.096 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.114 4.114 20 C -0.112 4.112 21 C -0.121 4.121 22 C -0.121 4.121 23 C -0.123 4.123 24 C -0.103 4.103 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.377 0.623 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.389 0.611 34 H 0.386 0.614 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.265 0.735 38 H 0.127 0.873 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.708 -4.333 -27.749 28.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.138 3.862 3 O -0.355 6.355 4 C -0.194 4.194 5 C 0.018 3.982 6 N -0.417 5.417 7 C 0.391 3.609 8 O -0.479 6.479 9 N -0.383 5.383 10 C 0.145 3.855 11 C -0.580 4.580 12 H 0.080 0.920 13 C -0.141 4.141 14 N -0.523 5.523 15 Si 0.731 3.269 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.114 4.114 20 C -0.130 4.130 21 C -0.139 4.139 22 C -0.139 4.139 23 C -0.141 4.141 24 C -0.121 4.121 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.225 0.775 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.222 0.778 34 H 0.218 0.782 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.229 -3.219 -27.418 27.794 hybrid contribution 1.650 -1.477 0.601 2.294 sum 4.879 -4.696 -26.816 27.658 Atomic orbital electron populations 1.21860 0.91476 1.02802 1.03696 1.19868 0.95114 0.81542 0.89653 1.86587 1.26880 1.25237 1.96759 1.22554 1.01486 1.00918 0.94490 1.21064 0.98745 0.96603 0.81767 1.45175 1.52975 1.38543 1.05032 1.16159 0.81413 0.82900 0.80388 1.90875 1.39739 1.31418 1.85901 1.45715 1.49887 1.36083 1.06605 1.18970 0.95566 0.95669 0.75249 1.21230 1.28777 1.16884 0.91081 0.91987 1.24952 0.95086 0.95487 0.98571 1.69980 1.34688 1.30198 1.17398 0.86412 0.79086 0.80483 0.80881 1.20498 1.21021 1.19811 1.20554 1.00218 0.94463 0.96175 1.21187 0.99075 0.94021 0.98730 1.21174 0.99680 0.99967 0.93120 1.21201 1.00099 0.94508 0.98129 1.21180 0.99755 0.94740 0.98378 1.21048 0.98442 1.00505 0.92133 0.90945 0.90425 0.91755 0.77501 0.90070 0.90753 0.91323 0.91628 0.77811 0.78247 0.95773 0.95767 0.92480 0.85540 0.86000 0.86205 0.86081 0.85339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.34 37.16 0.31 -1.01 16 2 C 0.18 1.59 0.92 -91.77 -0.08 1.51 16 3 O -0.55 -5.21 11.50 -35.23 -0.41 -5.62 16 4 C -0.16 -1.39 4.06 -26.72 -0.11 -1.50 16 5 C 0.14 1.88 5.08 -4.04 -0.02 1.86 16 6 N -0.76 -11.45 5.56 -65.22 -0.36 -11.81 16 7 C 0.69 14.69 8.57 -86.91 -0.74 13.94 16 8 O -0.60 -15.53 16.34 5.29 0.09 -15.44 16 9 N -0.73 -15.98 5.55 -66.42 -0.37 -16.35 16 10 C 0.27 7.28 5.43 -5.20 -0.03 7.26 16 11 C -0.54 -14.92 9.28 -34.44 -0.32 -15.24 16 12 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 15 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 C -0.11 -0.95 4.81 -104.62 -0.50 -1.45 16 20 C -0.11 -0.88 9.14 -39.58 -0.36 -1.24 16 21 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 22 C -0.12 -0.86 10.05 -39.58 -0.40 -1.25 16 23 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 24 C -0.10 -0.84 9.35 -39.58 -0.37 -1.21 16 25 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 26 H 0.08 0.82 6.34 -51.93 -0.33 0.49 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.38 2.49 9.04 45.56 0.41 2.90 16 29 H 0.08 0.63 6.21 -51.93 -0.32 0.31 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.03 7.82 -51.93 -0.41 0.62 16 32 H 0.07 0.93 6.34 -51.93 -0.33 0.60 16 33 H 0.39 4.58 8.49 -40.82 -0.35 4.23 16 34 H 0.39 7.15 8.34 -40.82 -0.34 6.81 16 35 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.13 0.85 6.05 -52.48 -0.32 0.53 16 39 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.13 0.99 7.48 -52.49 -0.39 0.60 16 LS Contribution 350.57 15.07 5.28 5.28 Total: -1.00 -34.78 350.57 -8.86 -43.64 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -5.29 Total: 9.24 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -3.52 Total: 0.74 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: 0.00 Total: -53.85 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.32 Total: -21.06 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.78 -8.86 -43.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359515.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.050 kcal (2) G-P(sol) polarization free energy of solvation -34.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds