Wall clock time and date at job start Tue Mar 31 2020 07:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.47371 * 2 1 4 4 C 1.53004 * 109.47293 * 120.00485 * 2 1 3 5 5 C 1.53008 * 109.46647 * 304.99902 * 4 2 1 6 6 N 1.46499 * 109.46790 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99632 * 180.02562 * 6 5 4 8 8 O 1.21586 * 120.00230 * 0.02562 * 7 6 5 9 9 N 1.34782 * 119.99857 * 180.02562 * 7 6 5 10 10 C 1.46494 * 119.99689 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.46829 * 179.97438 * 10 9 7 12 12 H 1.08000 * 119.99989 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99977 * 179.97438 * 11 10 9 14 14 N 1.31507 * 120.00020 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99880 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47208 * 89.99963 * 15 13 11 17 17 H 1.48499 * 109.46930 * 210.00100 * 15 13 11 18 18 H 1.48505 * 109.47091 * 329.99832 * 15 13 11 19 19 C 1.50706 * 109.47116 * 239.99921 * 2 1 3 20 20 C 1.38233 * 120.00109 * 269.72529 * 19 2 1 21 21 C 1.38238 * 119.99749 * 179.78525 * 20 19 2 22 22 C 1.38234 * 120.00078 * 0.44989 * 21 20 19 23 23 C 1.38238 * 120.00032 * 359.80374 * 22 21 20 24 24 C 1.38235 * 120.00123 * 359.97438 * 23 22 21 25 25 H 1.09008 * 109.47142 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47123 * 299.99378 * 1 2 3 27 27 H 1.09000 * 109.47214 * 60.00246 * 1 2 3 28 28 H 0.96691 * 114.00678 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47336 * 64.99698 * 4 2 1 30 30 H 1.08996 * 109.47426 * 185.00299 * 4 2 1 31 31 H 1.08999 * 109.47086 * 299.99949 * 5 4 2 32 32 H 1.08996 * 109.46883 * 60.00065 * 5 4 2 33 33 H 0.96998 * 120.00045 * 359.97438 * 6 5 4 34 34 H 0.96998 * 119.99820 * 359.97438 * 9 7 6 35 35 H 1.08996 * 109.47221 * 299.99796 * 10 9 7 36 36 H 1.09003 * 109.47464 * 59.99900 * 10 9 7 37 37 H 0.97000 * 119.99972 * 180.02562 * 14 13 11 38 38 H 1.08004 * 119.99934 * 0.02562 * 20 19 2 39 39 H 1.07999 * 119.99925 * 180.27297 * 21 20 19 40 40 H 1.08002 * 120.00276 * 179.83134 * 22 21 20 41 41 H 1.08000 * 120.00524 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.00181 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 1.4299 -0.0763 2.4953 6 7 1.9178 -0.7674 3.6914 7 6 1.5107 -0.3690 4.9129 8 8 0.7383 0.5635 5.0222 9 7 1.9600 -1.0045 6.0134 10 6 1.5179 -0.5711 7.3411 11 6 2.1602 -1.4390 8.3925 12 1 2.8309 -2.2337 8.1007 13 6 1.8923 -1.2180 9.7268 14 7 1.0760 -0.2501 10.0820 15 14 2.6890 -2.2934 11.0300 16 1 3.9816 -1.6920 11.4455 17 1 1.7888 -2.3940 12.2067 18 1 2.9299 -3.6490 10.4736 19 6 2.0323 -0.7105 -1.2305 20 6 2.2682 -2.0721 -1.1946 21 6 2.7247 -2.7244 -2.3246 22 6 2.9543 -2.0136 -3.4878 23 6 2.7235 -0.6511 -3.5221 24 6 2.2626 0.0006 -2.3935 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.9703 1.4236 -0.0004 29 1 1.7517 -1.7716 1.2055 30 1 3.1263 -0.6444 1.2952 31 1 1.7183 0.9739 2.5390 32 1 0.3437 -0.1533 2.4494 33 1 2.5332 -1.5121 3.6042 34 1 2.5759 -1.7487 5.9262 35 1 1.8083 0.4674 7.4997 36 1 0.4337 -0.6597 7.4100 37 1 0.8879 -0.0943 11.0208 38 1 2.0920 -2.6268 -0.2849 39 1 2.9048 -3.7890 -2.2979 40 1 3.3136 -2.5228 -4.3699 41 1 2.9025 -0.0957 -4.4309 42 1 2.0826 1.0651 -2.4202 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787359515.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:34 Heat of formation + Delta-G solvation = -92.263808 kcal Electronic energy + Delta-G solvation = -22436.952087 eV Core-core repulsion = 18994.369357 eV Total energy + Delta-G solvation = -3442.582731 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.14163 -40.63021 -38.42374 -36.36230 -35.80025 -34.37964 -33.67525 -31.76362 -31.18259 -29.67930 -28.64806 -25.69951 -24.48284 -23.63164 -22.73637 -21.92076 -21.01958 -19.77200 -18.57726 -17.97159 -17.41420 -17.16994 -16.83080 -16.53001 -16.10585 -15.80512 -15.51650 -15.33391 -14.98789 -14.85458 -14.44431 -14.26253 -14.02298 -13.95253 -13.55380 -13.29036 -13.16404 -12.87930 -12.72948 -12.66180 -12.46082 -12.32994 -12.21088 -11.93338 -11.58572 -11.46372 -11.31502 -10.91308 -10.79542 -10.24708 -9.79403 -9.66303 -9.56083 -8.27178 -6.43785 0.42153 0.52642 1.44224 1.47333 1.58243 1.89852 2.26007 2.40652 2.88125 3.07657 3.24789 3.50712 3.56560 3.88068 3.97072 4.11893 4.18575 4.22622 4.31639 4.43477 4.55902 4.68463 4.71024 4.85194 4.91276 4.96538 5.03241 5.13157 5.15248 5.20420 5.27841 5.29069 5.49967 5.55735 5.60141 5.65890 5.67856 5.69741 5.86331 6.12916 6.29236 6.68174 6.81154 7.25591 7.34338 7.74523 8.85260 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.033960 B = 0.002397 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.305215 B =11680.014255 C =12242.041883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.184 3.816 3 O -0.565 6.565 4 C -0.142 4.142 5 C 0.143 3.857 6 N -0.731 5.731 7 C 0.688 3.312 8 O -0.651 6.651 9 N -0.723 5.723 10 C 0.285 3.715 11 C -0.554 4.554 12 H 0.085 0.915 13 C 0.002 3.998 14 N -0.931 5.931 15 Si 0.988 3.012 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.255 1.255 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.128 4.128 22 C -0.127 4.127 23 C -0.130 4.130 24 C -0.115 4.115 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.389 0.611 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.411 0.589 34 H 0.405 0.595 35 H -0.016 1.016 36 H -0.015 1.015 37 H 0.269 0.731 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.676 -6.946 -28.890 30.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.143 3.857 3 O -0.373 6.373 4 C -0.180 4.180 5 C 0.019 3.981 6 N -0.389 5.389 7 C 0.388 3.612 8 O -0.534 6.534 9 N -0.377 5.377 10 C 0.161 3.839 11 C -0.592 4.592 12 H 0.103 0.897 13 C -0.198 4.198 14 N -0.570 5.570 15 Si 0.810 3.190 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.178 1.178 19 C -0.120 4.120 20 C -0.138 4.138 21 C -0.146 4.146 22 C -0.145 4.145 23 C -0.148 4.148 24 C -0.133 4.133 25 H 0.102 0.898 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.238 0.762 29 H 0.119 0.881 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.248 0.752 34 H 0.241 0.759 35 H 0.002 0.998 36 H 0.003 0.997 37 H 0.077 0.923 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.154 0.846 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.255 -5.885 -28.638 29.705 hybrid contribution 1.011 -0.612 0.830 1.444 sum 6.266 -6.497 -27.808 29.236 Atomic orbital electron populations 1.21885 0.92272 1.03265 1.02676 1.19788 0.94580 0.81376 0.89997 1.86565 1.28122 1.25826 1.96803 1.22475 1.02088 1.01456 0.91958 1.21173 0.98470 0.95976 0.82513 1.44913 1.52116 1.38535 1.03344 1.16368 0.80901 0.82218 0.81712 1.90842 1.42015 1.33710 1.86867 1.45287 1.50409 1.36831 1.05178 1.18405 0.93297 0.93953 0.78222 1.21602 1.29015 1.17259 0.91310 0.89719 1.26098 0.95428 0.96857 1.01392 1.70148 1.36368 1.32295 1.18170 0.85118 0.77849 0.78893 0.77093 1.19606 1.20999 1.17838 1.20453 1.00998 0.94807 0.95776 1.21369 0.99117 0.93782 0.99557 1.21463 0.99194 1.00994 0.92952 1.21509 0.99559 0.94498 0.98889 1.21425 0.99425 0.95227 0.98698 1.21135 0.98986 1.00592 0.92583 0.89782 0.92278 0.91910 0.76163 0.88122 0.89130 0.93276 0.92789 0.75239 0.75932 0.99813 0.99736 0.92254 0.84407 0.84232 0.84311 0.84590 0.85600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.34 71.98 0.60 -2.06 16 2 C 0.18 3.06 0.92 -11.54 -0.01 3.05 16 3 O -0.57 -10.51 11.50 -148.98 -1.71 -12.22 16 4 C -0.14 -2.24 4.06 30.60 0.12 -2.12 16 5 C 0.14 3.68 5.08 86.38 0.44 4.12 16 6 N -0.73 -21.20 5.56 -478.52 -2.66 -23.86 16 7 C 0.69 29.55 8.57 179.05 1.53 31.08 16 8 O -0.65 -35.08 16.34 -3.99 -0.07 -35.14 16 9 N -0.72 -31.76 5.55 -482.30 -2.68 -34.44 16 10 C 0.28 16.11 5.43 85.64 0.46 16.57 16 11 C -0.55 -30.49 9.28 25.60 0.24 -30.25 16 12 H 0.08 4.18 7.60 -2.91 -0.02 4.15 16 13 C 0.00 0.10 5.46 84.66 0.46 0.56 16 14 N -0.93 -56.88 13.29 21.45 0.28 -56.60 16 15 Si 0.99 42.49 29.54 68.60 2.03 44.51 16 16 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.25 -10.13 7.11 99.48 0.71 -9.43 16 19 C -0.12 -1.81 4.81 -19.86 -0.10 -1.90 16 20 C -0.12 -1.59 9.14 22.27 0.20 -1.39 16 21 C -0.13 -1.53 10.05 22.27 0.22 -1.30 16 22 C -0.13 -1.48 10.05 22.27 0.22 -1.26 16 23 C -0.13 -1.67 10.05 22.27 0.22 -1.44 16 24 C -0.11 -1.73 9.35 22.27 0.21 -1.52 16 25 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 26 H 0.06 1.30 6.34 -2.39 -0.02 1.28 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.39 4.83 9.04 -74.06 -0.67 4.17 16 29 H 0.10 1.25 6.21 -2.39 -0.01 1.23 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.49 7.82 -2.39 -0.02 1.47 16 32 H 0.05 1.55 6.34 -2.39 -0.02 1.54 16 33 H 0.41 8.54 8.49 -92.71 -0.79 7.75 16 34 H 0.41 14.42 8.34 -92.71 -0.77 13.64 16 35 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 36 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 37 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 38 H 0.14 1.41 6.05 -2.91 -0.02 1.39 16 39 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 40 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 41 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 42 H 0.13 1.88 7.48 -2.91 -0.02 1.85 16 Total: -1.00 -78.01 350.57 -1.14 -79.15 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: -1.17 Total: 26.45 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 4.84 Total: 12.15 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -5.05 Total: -114.89 kcal Atomic # 8 Polarization: -45.58 SS G_CDS: -1.78 Total: -47.36 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -78.01 -1.14 -79.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787359515.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.117 kcal (2) G-P(sol) polarization free energy of solvation -78.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds