Wall clock time and date at job start Tue Mar 31 2020 06:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47026 * 2 1 4 4 C 1.50697 * 109.47021 * 119.99906 * 2 1 3 5 5 C 1.35346 * 126.37985 * 324.68383 * 4 2 1 6 6 C 1.41544 * 105.50016 * 179.89719 * 5 4 2 7 7 C 1.47585 * 126.52399 * 180.17500 * 6 5 4 8 8 O 1.21490 * 120.00188 * 0.25927 * 7 6 5 9 9 O 1.34735 * 119.99996 * 180.26316 * 7 6 5 10 10 C 1.45198 * 116.99932 * 177.71072 * 9 7 6 11 11 C 1.50696 * 112.84833 * 65.17251 * 10 9 7 12 12 H 1.08008 * 120.00119 * 242.51912 * 11 10 9 13 13 C 1.37875 * 120.00222 * 62.52765 * 11 10 9 14 14 N 1.31511 * 119.99920 * 353.76891 * 13 11 10 15 15 Si 1.86806 * 120.00362 * 173.76957 * 13 11 10 16 16 H 1.48497 * 109.47001 * 59.99780 * 15 13 11 17 17 H 1.48498 * 109.46825 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46877 * 299.99742 * 15 13 11 19 19 C 1.53784 * 113.61497 * 293.97858 * 10 9 7 20 20 C 1.53956 * 87.01641 * 220.04849 * 19 10 9 21 21 C 1.53778 * 87.11478 * 25.36354 * 20 19 10 22 22 N 1.31851 * 106.95496 * 0.37305 * 6 5 4 23 23 N 1.28469 * 110.06264 * 359.76623 * 22 6 5 24 24 C 1.46501 * 124.88323 * 179.97438 * 23 22 6 25 25 H 1.09002 * 109.46907 * 59.99694 * 1 2 3 26 26 H 1.09005 * 109.47274 * 300.00528 * 1 2 3 27 27 H 1.08995 * 109.47212 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47253 * 240.00342 * 2 1 3 29 29 H 1.08999 * 109.47305 * 60.00296 * 3 2 1 30 30 H 1.09001 * 109.47381 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47035 * 300.00120 * 3 2 1 32 32 H 1.08000 * 127.24875 * 0.03522 * 5 4 2 33 33 H 0.97001 * 120.00818 * 185.02689 * 14 13 11 34 34 H 1.08995 * 113.61344 * 334.56914 * 19 10 9 35 35 H 1.09002 * 113.61681 * 105.47225 * 19 10 9 36 36 H 1.09003 * 113.53469 * 270.80415 * 20 19 10 37 37 H 1.09005 * 113.73937 * 139.94835 * 20 19 10 38 38 H 1.08998 * 113.61453 * 220.09081 * 21 20 19 39 39 H 1.08993 * 113.69101 * 89.19624 * 21 20 19 40 40 H 1.08997 * 109.47639 * 270.02637 * 24 23 22 41 41 H 1.08999 * 109.46754 * 30.02564 * 24 23 22 42 42 H 1.08999 * 109.47124 * 150.02578 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.4616 -0.6914 2.4576 6 6 2.2892 -1.5008 3.2722 7 6 2.0895 -1.8006 4.7034 8 8 1.1338 -1.3376 5.2934 9 8 2.9671 -2.5879 5.3556 10 6 2.7363 -2.7986 6.7735 11 6 1.4620 -3.5530 7.0531 12 1 0.6688 -3.0832 7.6159 13 6 1.3088 -4.8428 6.5908 14 7 2.2198 -5.3717 5.8035 15 14 -0.1928 -5.8392 7.0827 16 1 -1.4211 -5.1442 6.6206 17 1 -0.1208 -7.1843 6.4575 18 1 -0.2305 -5.9810 8.5604 19 6 2.8963 -1.5246 7.6197 20 6 3.5899 -2.4078 8.6728 21 6 3.9592 -3.3568 7.5204 22 7 3.2748 -1.9323 2.5101 23 7 3.1390 -1.4796 1.3155 24 6 4.0536 -1.7574 0.2053 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 0.5627 -0.1705 2.7524 33 1 2.0778 -6.2510 5.4195 34 1 3.5553 -0.7818 7.1703 35 1 1.9495 -1.1029 7.9574 36 1 2.9014 -2.8457 9.3955 37 1 4.4525 -1.9351 9.1427 38 1 3.8693 -4.4121 7.7780 39 1 4.9092 -3.1170 7.0430 40 1 4.8361 -0.9990 0.1806 41 1 4.5043 -2.7402 0.3431 42 1 3.5008 -1.7396 -0.7340 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788135490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:26 Heat of formation + Delta-G solvation = 10.220687 kcal Electronic energy + Delta-G solvation = -24045.358525 eV Core-core repulsion = 20607.219856 eV Total energy + Delta-G solvation = -3438.138669 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.37519 -38.96781 -36.85099 -35.80477 -33.98053 -33.19322 -32.19747 -29.42979 -27.46182 -27.32376 -26.04045 -24.47487 -23.77369 -22.65472 -22.05169 -20.02964 -18.98924 -18.43421 -16.98929 -16.62706 -16.05291 -15.44815 -15.03075 -14.69735 -14.59396 -14.09784 -13.87803 -13.75472 -13.68637 -13.22922 -12.99152 -12.69613 -12.47031 -12.29518 -12.09200 -11.70353 -11.49547 -11.36975 -11.02910 -10.98479 -10.94239 -10.83307 -10.39971 -10.28307 -10.21774 -9.81443 -9.71645 -9.37293 -8.73440 -8.70140 -8.63707 -8.47056 -8.39942 -6.00545 -4.13184 2.09647 2.47497 2.69785 3.34262 3.37752 3.42203 4.03599 4.29930 4.42922 4.47708 4.57423 4.69629 4.92459 5.05796 5.18790 5.26951 5.35078 5.40692 5.46542 5.57804 5.65928 5.71030 5.80616 5.86437 5.94048 5.98701 6.03587 6.06874 6.26615 6.30538 6.50546 6.57474 6.73774 6.83311 7.00552 7.04793 7.19432 7.38069 7.64533 7.87327 8.01731 8.29911 8.44432 8.89998 9.35338 9.56984 11.03382 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018135 B = 0.004714 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.630585 B = 5938.465161 C = 6390.501690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.020 4.020 3 C -0.143 4.143 4 C 0.004 3.996 5 C -0.177 4.177 6 C 0.017 3.983 7 C 0.549 3.451 8 O -0.505 6.505 9 O -0.326 6.326 10 C 0.239 3.761 11 C -0.515 4.515 12 H 0.068 0.932 13 C 0.076 3.924 14 N -0.858 5.858 15 Si 0.892 3.108 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.159 4.159 20 C -0.131 4.131 21 C -0.107 4.107 22 N -0.236 5.236 23 N -0.290 5.290 24 C 0.088 3.912 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.159 0.841 33 H 0.263 0.737 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.410 9.675 -13.305 16.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.040 4.040 3 C -0.201 4.201 4 C -0.119 4.119 5 C -0.204 4.204 6 C -0.142 4.142 7 C 0.390 3.610 8 O -0.392 6.392 9 O -0.241 6.241 10 C 0.205 3.795 11 C -0.552 4.552 12 H 0.086 0.914 13 C -0.130 4.130 14 N -0.494 5.494 15 Si 0.719 3.281 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.197 4.197 20 C -0.168 4.168 21 C -0.145 4.145 22 N -0.071 5.071 23 N -0.078 5.078 24 C -0.052 4.052 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.176 0.824 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.115 0.885 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.299 8.888 -13.175 16.232 hybrid contribution -1.521 -0.234 0.070 1.540 sum 1.779 8.654 -13.104 15.805 Atomic orbital electron populations 1.21830 0.93219 1.02670 1.02414 1.19611 0.96662 0.95241 0.92520 1.21847 1.00989 0.94777 1.02478 1.21245 0.91662 1.01139 0.97864 1.21416 1.02986 1.04923 0.91100 1.21472 0.95531 1.02926 0.94254 1.19239 0.81172 0.76551 0.84072 1.90735 1.29958 1.50973 1.67532 1.86637 1.49670 1.59665 1.28112 1.21227 0.94894 0.90736 0.72665 1.20900 1.00811 0.96953 1.36568 0.91403 1.25082 0.96149 0.97365 0.94429 1.70046 1.33286 1.16906 1.29143 0.86657 0.83349 0.79058 0.79052 1.20029 1.21211 1.19830 1.23564 0.99794 0.97793 0.98576 1.22563 0.99289 0.98566 0.96425 1.22884 0.96938 0.99866 0.94770 1.73851 1.23577 1.18976 0.90689 1.45400 1.19303 1.34981 1.08137 1.22060 0.92839 1.04249 0.86101 0.92040 0.91652 0.92107 0.90448 0.91801 0.92789 0.91971 0.82390 0.92763 0.92246 0.91742 0.90234 0.93043 0.90767 0.92257 0.90075 0.88479 0.89164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 8.79 37.16 0.33 -1.00 16 2 C -0.02 -0.20 3.09 -91.77 -0.28 -0.48 16 3 C -0.14 -1.20 9.18 37.16 0.34 -0.86 16 4 C 0.00 0.06 5.83 -82.21 -0.48 -0.42 16 5 C -0.18 -3.18 9.96 -39.35 -0.39 -3.58 16 6 C 0.02 0.38 7.17 -82.79 -0.59 -0.21 16 7 C 0.55 14.38 7.53 34.54 0.26 14.64 16 8 O -0.50 -13.89 15.42 -19.26 -0.30 -14.18 16 9 O -0.33 -9.07 9.77 -40.59 -0.40 -9.47 16 10 C 0.24 6.39 0.47 -90.96 -0.04 6.34 16 11 C -0.52 -14.83 7.08 -34.44 -0.24 -15.07 16 12 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 13 C 0.08 2.17 5.30 -17.82 -0.09 2.08 16 14 N -0.86 -25.34 12.79 55.43 0.71 -24.63 16 15 Si 0.89 22.00 29.55 -169.99 -5.02 16.97 16 16 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 C -0.16 -3.72 6.57 -25.82 -0.17 -3.89 16 20 C -0.13 -2.75 7.81 -25.83 -0.20 -2.95 16 21 C -0.11 -2.57 7.28 -25.92 -0.19 -2.76 16 22 N -0.24 -4.86 11.99 33.41 0.40 -4.46 16 23 N -0.29 -4.48 3.70 -63.86 -0.24 -4.71 16 24 C 0.09 0.84 11.11 59.85 0.66 1.51 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.64 7.36 -51.93 -0.38 0.26 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 0.61 6.86 -51.93 -0.36 0.25 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.16 2.64 7.48 -52.49 -0.39 2.25 16 33 H 0.26 7.40 8.32 -40.82 -0.34 7.06 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.06 1.53 8.09 -51.93 -0.42 1.11 16 36 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 1.89 7.98 -51.93 -0.41 1.48 16 39 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.09 0.58 6.87 -51.93 -0.36 0.23 16 LS Contribution 352.01 15.07 5.30 5.30 Total: -1.00 -34.97 352.01 -7.15 -42.13 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -6.52 Total: -0.30 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -1.10 Total: -6.65 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.87 Total: -33.81 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.69 Total: -23.65 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.97 -7.15 -42.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788135490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.346 kcal (2) G-P(sol) polarization free energy of solvation -34.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds