Wall clock time and date at job start Tue Mar 31 2020 06:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47026 * 2 1 4 4 C 1.50697 * 109.47021 * 119.99906 * 2 1 3 5 5 C 1.35346 * 126.37985 * 324.68383 * 4 2 1 6 6 C 1.41544 * 105.50016 * 179.89719 * 5 4 2 7 7 C 1.47585 * 126.52399 * 180.17500 * 6 5 4 8 8 O 1.21490 * 120.00188 * 0.25927 * 7 6 5 9 9 O 1.34735 * 119.99996 * 180.26316 * 7 6 5 10 10 C 1.45198 * 116.99932 * 177.71072 * 9 7 6 11 11 C 1.50696 * 112.84833 * 65.17251 * 10 9 7 12 12 H 1.08008 * 120.00119 * 242.51912 * 11 10 9 13 13 C 1.37875 * 120.00222 * 62.52765 * 11 10 9 14 14 N 1.31511 * 119.99920 * 353.76891 * 13 11 10 15 15 Si 1.86806 * 120.00362 * 173.76957 * 13 11 10 16 16 H 1.48497 * 109.47001 * 59.99780 * 15 13 11 17 17 H 1.48498 * 109.46825 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46877 * 299.99742 * 15 13 11 19 19 C 1.53784 * 113.61497 * 293.97858 * 10 9 7 20 20 C 1.53956 * 87.01641 * 220.04849 * 19 10 9 21 21 C 1.53778 * 87.11478 * 25.36354 * 20 19 10 22 22 N 1.31851 * 106.95496 * 0.37305 * 6 5 4 23 23 N 1.28469 * 110.06264 * 359.76623 * 22 6 5 24 24 C 1.46501 * 124.88323 * 179.97438 * 23 22 6 25 25 H 1.09002 * 109.46907 * 59.99694 * 1 2 3 26 26 H 1.09005 * 109.47274 * 300.00528 * 1 2 3 27 27 H 1.08995 * 109.47212 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47253 * 240.00342 * 2 1 3 29 29 H 1.08999 * 109.47305 * 60.00296 * 3 2 1 30 30 H 1.09001 * 109.47381 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47035 * 300.00120 * 3 2 1 32 32 H 1.08000 * 127.24875 * 0.03522 * 5 4 2 33 33 H 0.97001 * 120.00818 * 185.02689 * 14 13 11 34 34 H 1.08995 * 113.61344 * 334.56914 * 19 10 9 35 35 H 1.09002 * 113.61681 * 105.47225 * 19 10 9 36 36 H 1.09003 * 113.53469 * 270.80415 * 20 19 10 37 37 H 1.09005 * 113.73937 * 139.94835 * 20 19 10 38 38 H 1.08998 * 113.61453 * 220.09081 * 21 20 19 39 39 H 1.08993 * 113.69101 * 89.19624 * 21 20 19 40 40 H 1.08997 * 109.47639 * 270.02637 * 24 23 22 41 41 H 1.08999 * 109.46754 * 30.02564 * 24 23 22 42 42 H 1.08999 * 109.47124 * 150.02578 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.4616 -0.6914 2.4576 6 6 2.2892 -1.5008 3.2722 7 6 2.0895 -1.8006 4.7034 8 8 1.1338 -1.3376 5.2934 9 8 2.9671 -2.5879 5.3556 10 6 2.7363 -2.7986 6.7735 11 6 1.4620 -3.5530 7.0531 12 1 0.6688 -3.0832 7.6159 13 6 1.3088 -4.8428 6.5908 14 7 2.2198 -5.3717 5.8035 15 14 -0.1928 -5.8392 7.0827 16 1 -1.4211 -5.1442 6.6206 17 1 -0.1208 -7.1843 6.4575 18 1 -0.2305 -5.9810 8.5604 19 6 2.8963 -1.5246 7.6197 20 6 3.5899 -2.4078 8.6728 21 6 3.9592 -3.3568 7.5204 22 7 3.2748 -1.9323 2.5101 23 7 3.1390 -1.4796 1.3155 24 6 4.0536 -1.7574 0.2053 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 0.5627 -0.1705 2.7524 33 1 2.0778 -6.2510 5.4195 34 1 3.5553 -0.7818 7.1703 35 1 1.9495 -1.1029 7.9574 36 1 2.9014 -2.8457 9.3955 37 1 4.4525 -1.9351 9.1427 38 1 3.8693 -4.4121 7.7780 39 1 4.9092 -3.1170 7.0430 40 1 4.8361 -0.9990 0.1806 41 1 4.5043 -2.7402 0.3431 42 1 3.5008 -1.7396 -0.7340 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788135490.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:24 Heat of formation + Delta-G solvation = -11.325968 kcal Electronic energy + Delta-G solvation = -24046.292858 eV Core-core repulsion = 20607.219856 eV Total energy + Delta-G solvation = -3439.073002 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.72092 -40.95889 -38.78826 -36.69492 -36.00654 -34.43708 -34.36353 -30.66546 -28.81470 -28.04133 -27.99634 -26.39423 -25.46669 -24.01154 -23.46311 -21.43918 -20.52148 -20.38123 -18.59046 -18.20856 -17.33603 -17.13218 -16.97691 -16.79035 -16.03638 -15.60872 -15.46425 -14.99879 -14.80628 -14.68284 -14.15718 -13.95915 -13.57217 -13.53472 -13.40406 -13.00202 -12.95028 -12.94554 -12.80035 -12.60405 -12.28902 -12.13702 -12.09495 -11.81580 -11.75071 -11.67906 -11.66743 -11.36765 -10.80157 -10.57245 -10.44966 -10.09115 -9.94542 -8.18475 -6.38020 0.53399 1.10304 1.34638 1.36598 1.44906 1.56156 2.29397 2.35105 2.47516 3.10545 3.44767 3.51303 3.91334 3.98001 4.00813 4.15872 4.20479 4.29722 4.34718 4.41858 4.47441 4.54595 4.64715 4.70697 4.72650 4.83407 4.85450 4.91058 5.01228 5.02742 5.14203 5.15915 5.29080 5.36882 5.40552 5.41001 5.44974 5.62019 5.74375 5.90584 5.96627 6.35194 6.66544 6.87969 7.28626 7.42383 8.85014 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.018135 B = 0.004714 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.630585 B = 5938.465161 C = 6390.501690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.017 4.017 3 C -0.141 4.141 4 C 0.033 3.967 5 C -0.198 4.198 6 C -0.029 4.029 7 C 0.540 3.460 8 O -0.535 6.535 9 O -0.345 6.345 10 C 0.208 3.792 11 C -0.531 4.531 12 H 0.052 0.948 13 C 0.030 3.970 14 N -0.887 5.887 15 Si 0.952 3.048 16 H -0.281 1.281 17 H -0.277 1.277 18 H -0.258 1.258 19 C -0.154 4.154 20 C -0.107 4.107 21 C -0.105 4.105 22 N -0.267 5.267 23 N -0.276 5.276 24 C 0.071 3.929 25 H 0.091 0.909 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.111 0.889 29 H 0.047 0.953 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.160 0.840 33 H 0.263 0.737 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.053 0.947 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.800 10.566 -15.587 19.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.037 4.037 3 C -0.198 4.198 4 C -0.092 4.092 5 C -0.225 4.225 6 C -0.185 4.185 7 C 0.383 3.617 8 O -0.425 6.425 9 O -0.260 6.260 10 C 0.174 3.826 11 C -0.568 4.568 12 H 0.070 0.930 13 C -0.173 4.173 14 N -0.523 5.523 15 Si 0.776 3.224 16 H -0.207 1.207 17 H -0.202 1.202 18 H -0.182 1.182 19 C -0.192 4.192 20 C -0.144 4.144 21 C -0.143 4.143 22 N -0.105 5.105 23 N -0.065 5.065 24 C -0.067 4.067 25 H 0.110 0.890 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.129 0.871 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.177 0.823 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.126 0.874 41 H 0.114 0.886 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.710 9.776 -15.450 18.655 hybrid contribution -1.596 -0.444 0.599 1.761 sum 2.114 9.333 -14.851 17.667 Atomic orbital electron populations 1.21864 0.92870 1.02208 1.03361 1.19894 0.96877 0.95911 0.90998 1.21844 1.01245 0.93538 1.03200 1.21931 0.89959 0.99018 0.98271 1.21565 1.03416 1.05380 0.92147 1.21198 0.98245 1.06133 0.92952 1.19894 0.80455 0.75623 0.85723 1.90675 1.30923 1.52138 1.68743 1.86613 1.50304 1.60320 1.28729 1.21592 0.95348 0.92803 0.72845 1.21043 1.01404 0.97609 1.36717 0.92992 1.25807 0.98999 0.98221 0.94268 1.70159 1.34936 1.17162 1.30087 0.85720 0.79438 0.77677 0.79527 1.20686 1.20186 1.18237 1.23490 0.99774 0.97081 0.98809 1.22476 1.00232 0.96549 0.95123 1.22858 0.96363 0.99221 0.95877 1.73726 1.23744 1.20265 0.92736 1.45971 1.19809 1.33154 1.07596 1.22665 0.93365 1.05175 0.85498 0.88991 0.92900 0.93301 0.87066 0.93357 0.92402 0.89055 0.82277 0.92788 0.91347 0.92924 0.90193 0.88881 0.92851 0.91424 0.87433 0.88603 0.85021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.79 71.98 0.63 -1.66 16 2 C -0.02 -0.27 3.09 -11.54 -0.04 -0.30 16 3 C -0.14 -1.83 9.18 71.98 0.66 -1.17 16 4 C 0.03 0.91 5.83 41.40 0.24 1.15 16 5 C -0.20 -7.29 9.96 22.42 0.22 -7.06 16 6 C -0.03 -1.35 7.17 42.42 0.30 -1.05 16 7 C 0.54 29.89 7.53 70.29 0.53 30.42 16 8 O -0.54 -31.26 15.42 19.87 0.31 -30.96 16 9 O -0.34 -20.11 9.77 -56.46 -0.55 -20.66 16 10 C 0.21 11.52 0.47 -11.01 -0.01 11.51 16 11 C -0.53 -31.68 7.08 25.60 0.18 -31.50 16 12 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 13 C 0.03 1.78 5.30 84.65 0.45 2.23 16 14 N -0.89 -54.02 12.79 21.45 0.27 -53.75 16 15 Si 0.95 46.16 29.55 68.60 2.03 48.19 16 16 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 17 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 18 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 19 C -0.15 -7.31 6.57 31.18 0.20 -7.11 16 20 C -0.11 -4.39 7.81 31.18 0.24 -4.15 16 21 C -0.11 -5.16 7.28 31.12 0.23 -4.93 16 22 N -0.27 -11.21 11.99 -48.22 -0.58 -11.79 16 23 N -0.28 -8.12 3.70 -355.94 -1.32 -9.44 16 24 C 0.07 1.12 11.11 127.77 1.42 2.54 16 25 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.05 0.97 7.36 -2.38 -0.02 0.95 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.11 1.10 6.86 -2.39 -0.02 1.08 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.16 5.59 7.48 -2.91 -0.02 5.57 16 33 H 0.26 15.22 8.32 -92.71 -0.77 14.45 16 34 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 35 H 0.05 2.57 8.09 -2.39 -0.02 2.55 16 36 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 37 H 0.09 3.08 8.14 -2.38 -0.02 3.06 16 38 H 0.05 2.79 7.98 -2.39 -0.02 2.77 16 39 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.13 1.01 6.87 -2.39 -0.02 0.99 16 Total: -1.00 -81.56 352.01 6.44 -75.12 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: 1.00 Total: 14.35 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 5.27 Total: -11.08 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -1.62 Total: -74.97 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -0.25 Total: -51.61 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -81.56 6.44 -75.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788135490.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.798 kcal (2) G-P(sol) polarization free energy of solvation -81.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds