Wall clock time and date at job start Tue Mar 31 2020 07:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47048 * 2 1 4 4 C 1.53001 * 109.46905 * 239.99657 * 2 1 3 5 5 O 1.42892 * 109.47255 * 60.00115 * 4 2 1 6 6 C 1.53007 * 109.46706 * 119.99819 * 2 1 3 7 7 N 1.46497 * 109.46855 * 299.99783 * 6 2 1 8 8 N 1.40101 * 119.99768 * 180.02562 * 7 6 2 9 9 C 1.29744 * 120.00098 * 180.02562 * 8 7 6 10 10 C 1.47504 * 120.00072 * 179.97438 * 9 8 7 11 11 C 1.39762 * 120.12128 * 359.97438 * 10 9 8 12 12 C 1.37975 * 119.97765 * 180.02562 * 11 10 9 13 13 C 1.38251 * 120.23188 * 359.72322 * 12 11 10 14 14 C 1.38980 * 120.24431 * 0.54897 * 13 12 11 15 15 O 1.35760 * 119.98846 * 179.72405 * 14 13 12 16 16 C 1.34837 * 116.99569 * 174.18600 * 15 14 13 17 17 H 1.07995 * 119.99773 * 5.05821 * 16 15 14 18 18 C 1.38645 * 119.99868 * 185.05741 * 16 15 14 19 19 N 1.31564 * 119.99850 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99994 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47256 * 89.99890 * 20 18 16 22 22 H 1.48501 * 109.46847 * 209.99731 * 20 18 16 23 23 H 1.48496 * 109.47167 * 329.99789 * 20 18 16 24 24 C 1.38607 * 120.01329 * 359.45435 * 14 13 12 25 25 H 1.08999 * 109.47242 * 300.00220 * 1 2 3 26 26 H 1.09002 * 109.47384 * 60.00149 * 1 2 3 27 27 H 1.09006 * 109.47328 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46997 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47102 * 299.99400 * 3 2 1 30 30 H 1.08999 * 109.47278 * 59.99803 * 3 2 1 31 31 H 1.09005 * 109.46531 * 180.02562 * 4 2 1 32 32 H 1.08998 * 109.47209 * 299.99759 * 4 2 1 33 33 H 0.96694 * 113.99969 * 179.97438 * 5 4 2 34 34 H 1.09004 * 109.46578 * 179.97438 * 6 2 1 35 35 H 1.08993 * 109.47204 * 59.99964 * 6 2 1 36 36 H 0.97001 * 120.00636 * 359.97438 * 7 6 2 37 37 H 1.07999 * 119.99932 * 359.97438 * 9 8 7 38 38 H 1.07998 * 120.00747 * 359.97438 * 11 10 9 39 39 H 1.08004 * 119.88184 * 179.97438 * 12 11 10 40 40 H 1.08007 * 119.87842 * 180.27967 * 13 12 11 41 41 H 0.97007 * 119.99739 * 180.02562 * 19 18 16 42 42 H 1.08009 * 120.11063 * 180.25211 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 1.5636 -0.0478 -2.4160 6 6 2.0399 -0.7213 1.2493 7 7 1.5516 -0.0305 2.4454 8 7 1.8904 -0.5088 3.7179 9 6 1.4575 0.1026 4.7772 10 6 1.8137 -0.4013 6.1170 11 6 2.6170 -1.5375 6.2482 12 6 2.9480 -2.0066 7.5029 13 6 2.4924 -1.3532 8.6328 14 6 1.6884 -0.2259 8.5133 15 8 1.2394 0.4084 9.6265 16 6 0.5659 1.5622 9.4438 17 1 0.3342 1.8997 8.4444 18 6 0.1708 2.3151 10.5389 19 7 0.4527 1.9035 11.7563 20 14 -0.7629 3.9131 10.2859 21 1 -2.2215 3.6360 10.2636 22 1 -0.4537 4.8483 11.3972 23 1 -0.3556 4.5255 8.9958 24 6 1.3497 0.2542 7.2579 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9563 0.8899 31 1 3.1300 -0.7217 -1.2489 32 1 1.6766 -1.7490 -1.2491 33 1 1.8493 -0.4511 -3.2471 34 1 3.1300 -0.7216 1.2491 35 1 1.6766 -1.7488 1.2494 36 1 0.9942 0.7584 2.3564 37 1 0.8363 0.9804 4.6781 38 1 2.9778 -2.0485 5.3679 39 1 3.5685 -2.8850 7.6025 40 1 2.7587 -1.7227 9.6122 41 1 0.1759 2.4302 12.5225 42 1 0.7283 1.1325 7.1632 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799114850.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:41 Heat of formation + Delta-G solvation = -16.982936 kcal Electronic energy + Delta-G solvation = -22115.378432 eV Core-core repulsion = 18676.060125 eV Total energy + Delta-G solvation = -3439.318307 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.08258 -38.91277 -37.02389 -36.23501 -34.99586 -32.31032 -31.62503 -29.52796 -28.57886 -27.55750 -27.04841 -25.44574 -24.78296 -22.69602 -21.51387 -20.02680 -19.25245 -18.05392 -17.82366 -16.85644 -16.46420 -15.61241 -15.38421 -15.00962 -14.80062 -14.39857 -14.31018 -14.04721 -13.76245 -13.60122 -13.42782 -13.00371 -12.82151 -12.62909 -12.35196 -12.26183 -11.91066 -11.65859 -11.35226 -11.17444 -11.12290 -10.94597 -10.77101 -10.72075 -10.69160 -10.43347 -10.38545 -9.83365 -9.36697 -8.86033 -8.59044 -7.46464 -7.10031 -6.41741 -4.01287 1.55223 2.39249 2.88027 3.07580 3.14858 3.18293 3.20287 3.90646 3.98836 4.38325 4.39798 4.64166 4.68426 4.95408 5.09626 5.10543 5.12252 5.16534 5.31745 5.36769 5.40656 5.54119 5.54596 5.66728 5.71300 5.76156 5.83907 6.01545 6.01890 6.03199 6.14434 6.24936 6.50850 6.73560 6.85890 7.10443 7.14944 7.22528 7.32627 7.38864 7.44294 7.81724 8.02521 8.58502 9.03980 9.74370 10.76442 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019491 B = 0.002743 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.197495 B =10204.262419 C =11441.964445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.075 4.075 3 C -0.137 4.137 4 C 0.090 3.910 5 O -0.568 6.568 6 C 0.173 3.827 7 N -0.666 5.666 8 N -0.231 5.231 9 C 0.080 3.920 10 C -0.005 4.005 11 C -0.175 4.175 12 C -0.084 4.084 13 C -0.180 4.180 14 C 0.150 3.850 15 O -0.179 6.179 16 C -0.392 4.392 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.864 5.864 20 Si 0.939 3.061 21 H -0.274 1.274 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.208 4.208 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.379 0.621 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.374 0.626 37 H 0.104 0.896 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.269 0.731 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.408 -3.858 -23.459 23.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.077 4.077 3 C -0.194 4.194 4 C 0.011 3.989 5 O -0.374 6.374 6 C 0.048 3.952 7 N -0.406 5.406 8 N -0.038 5.038 9 C -0.131 4.131 10 C -0.007 4.007 11 C -0.196 4.196 12 C -0.102 4.102 13 C -0.201 4.201 14 C 0.096 3.904 15 O -0.083 6.083 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.499 5.499 20 Si 0.764 3.236 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.230 4.230 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.226 0.774 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.212 0.788 37 H 0.121 0.879 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.079 0.921 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.721 -4.299 -23.073 23.627 hybrid contribution -0.962 1.496 -0.463 1.838 sum 1.759 -2.803 -23.536 23.768 Atomic orbital electron populations 1.21781 0.93455 1.02107 1.02075 1.20783 0.97160 0.96759 0.92957 1.21781 1.00939 0.94628 1.02077 1.22042 0.97290 0.94540 0.84981 1.86451 1.77524 1.57406 1.15984 1.20798 0.98056 0.95034 0.81332 1.47877 1.59817 1.32922 0.99957 1.74142 1.16421 1.22368 0.90826 1.24063 0.99853 0.98137 0.91059 1.18012 0.98100 0.95532 0.89066 1.20771 1.03511 0.98455 0.96856 1.20609 0.99039 0.98654 0.91936 1.20352 1.03105 0.97798 0.98816 1.19189 0.92000 0.92268 0.86898 1.84006 1.63060 1.34655 1.26596 1.21286 1.33876 0.97030 0.94598 0.89147 1.25260 0.97723 0.99173 0.94344 1.70043 1.43754 1.38320 0.97786 0.85739 0.79335 0.80122 0.78391 1.19941 1.20301 1.19244 1.21179 1.07003 1.03659 0.91194 0.92733 0.91613 0.92602 0.92600 0.91616 0.92725 0.93279 0.93282 0.77383 0.92563 0.92561 0.78782 0.87851 0.86668 0.86825 0.86457 0.92092 0.85251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.15 37.16 0.30 -0.89 16 2 C -0.08 -0.63 0.61 -154.51 -0.09 -0.72 16 3 C -0.14 -1.19 8.16 37.16 0.30 -0.89 16 4 C 0.09 0.60 5.91 37.16 0.22 0.82 16 5 O -0.57 -3.92 12.31 -35.23 -0.43 -4.35 16 6 C 0.17 1.74 5.56 -4.04 -0.02 1.72 16 7 N -0.67 -8.33 6.03 -10.61 -0.06 -8.40 16 8 N -0.23 -3.61 10.61 32.16 0.34 -3.27 16 9 C 0.08 1.32 10.75 -14.66 -0.16 1.16 16 10 C 0.00 -0.09 5.87 -105.07 -0.62 -0.71 16 11 C -0.17 -3.18 9.58 -39.11 -0.37 -3.55 16 12 C -0.08 -1.52 10.02 -39.67 -0.40 -1.92 16 13 C -0.18 -3.79 9.98 -39.30 -0.39 -4.18 16 14 C 0.15 3.59 6.64 -39.17 -0.26 3.33 16 15 O -0.18 -5.07 9.76 0.00 0.00 -5.07 16 16 C -0.39 -10.84 9.48 30.88 0.29 -10.55 16 17 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.28 13.67 55.48 0.76 -24.52 16 20 Si 0.94 20.44 29.55 -169.99 -5.02 15.41 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 C -0.21 -4.49 8.90 -38.96 -0.35 -4.84 16 25 H 0.05 0.49 6.86 -51.93 -0.36 0.14 16 26 H 0.06 0.59 7.68 -51.93 -0.40 0.19 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.59 7.68 -51.93 -0.40 0.19 16 30 H 0.05 0.50 6.86 -51.93 -0.36 0.14 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.38 0.96 9.12 45.56 0.42 1.38 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.37 4.29 6.12 -182.60 -1.12 3.17 16 37 H 0.10 1.52 8.02 -52.49 -0.42 1.10 16 38 H 0.12 1.93 7.55 -52.49 -0.40 1.54 16 39 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 40 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 41 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.13 2.75 5.63 -52.48 -0.30 2.45 16 LS Contribution 352.38 15.07 5.31 5.31 Total: -1.00 -31.85 352.38 -6.87 -38.71 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.12 Total: 6.41 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -1.64 Total: -20.24 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 1.04 Total: -36.19 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.43 Total: -9.42 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.85 -6.87 -38.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799114850.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.729 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds