Wall clock time and date at job start Tue Mar 31 2020 07:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47048 * 2 1 4 4 C 1.53001 * 109.46905 * 239.99657 * 2 1 3 5 5 O 1.42892 * 109.47255 * 60.00115 * 4 2 1 6 6 C 1.53007 * 109.46706 * 119.99819 * 2 1 3 7 7 N 1.46497 * 109.46855 * 299.99783 * 6 2 1 8 8 N 1.40101 * 119.99768 * 180.02562 * 7 6 2 9 9 C 1.29744 * 120.00098 * 180.02562 * 8 7 6 10 10 C 1.47504 * 120.00072 * 179.97438 * 9 8 7 11 11 C 1.39762 * 120.12128 * 359.97438 * 10 9 8 12 12 C 1.37975 * 119.97765 * 180.02562 * 11 10 9 13 13 C 1.38251 * 120.23188 * 359.72322 * 12 11 10 14 14 C 1.38980 * 120.24431 * 0.54897 * 13 12 11 15 15 O 1.35760 * 119.98846 * 179.72405 * 14 13 12 16 16 C 1.34837 * 116.99569 * 174.18600 * 15 14 13 17 17 H 1.07995 * 119.99773 * 5.05821 * 16 15 14 18 18 C 1.38645 * 119.99868 * 185.05741 * 16 15 14 19 19 N 1.31564 * 119.99850 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99994 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47256 * 89.99890 * 20 18 16 22 22 H 1.48501 * 109.46847 * 209.99731 * 20 18 16 23 23 H 1.48496 * 109.47167 * 329.99789 * 20 18 16 24 24 C 1.38607 * 120.01329 * 359.45435 * 14 13 12 25 25 H 1.08999 * 109.47242 * 300.00220 * 1 2 3 26 26 H 1.09002 * 109.47384 * 60.00149 * 1 2 3 27 27 H 1.09006 * 109.47328 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46997 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47102 * 299.99400 * 3 2 1 30 30 H 1.08999 * 109.47278 * 59.99803 * 3 2 1 31 31 H 1.09005 * 109.46531 * 180.02562 * 4 2 1 32 32 H 1.08998 * 109.47209 * 299.99759 * 4 2 1 33 33 H 0.96694 * 113.99969 * 179.97438 * 5 4 2 34 34 H 1.09004 * 109.46578 * 179.97438 * 6 2 1 35 35 H 1.08993 * 109.47204 * 59.99964 * 6 2 1 36 36 H 0.97001 * 120.00636 * 359.97438 * 7 6 2 37 37 H 1.07999 * 119.99932 * 359.97438 * 9 8 7 38 38 H 1.07998 * 120.00747 * 359.97438 * 11 10 9 39 39 H 1.08004 * 119.88184 * 179.97438 * 12 11 10 40 40 H 1.08007 * 119.87842 * 180.27967 * 13 12 11 41 41 H 0.97007 * 119.99739 * 180.02562 * 19 18 16 42 42 H 1.08009 * 120.11063 * 180.25211 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 1.5636 -0.0478 -2.4160 6 6 2.0399 -0.7213 1.2493 7 7 1.5516 -0.0305 2.4454 8 7 1.8904 -0.5088 3.7179 9 6 1.4575 0.1026 4.7772 10 6 1.8137 -0.4013 6.1170 11 6 2.6170 -1.5375 6.2482 12 6 2.9480 -2.0066 7.5029 13 6 2.4924 -1.3532 8.6328 14 6 1.6884 -0.2259 8.5133 15 8 1.2394 0.4084 9.6265 16 6 0.5659 1.5622 9.4438 17 1 0.3342 1.8997 8.4444 18 6 0.1708 2.3151 10.5389 19 7 0.4527 1.9035 11.7563 20 14 -0.7629 3.9131 10.2859 21 1 -2.2215 3.6360 10.2636 22 1 -0.4537 4.8483 11.3972 23 1 -0.3556 4.5255 8.9958 24 6 1.3497 0.2542 7.2579 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6766 1.9563 0.8899 31 1 3.1300 -0.7217 -1.2489 32 1 1.6766 -1.7490 -1.2491 33 1 1.8493 -0.4511 -3.2471 34 1 3.1300 -0.7216 1.2491 35 1 1.6766 -1.7488 1.2494 36 1 0.9942 0.7584 2.3564 37 1 0.8363 0.9804 4.6781 38 1 2.9778 -2.0485 5.3679 39 1 3.5685 -2.8850 7.6025 40 1 2.7587 -1.7227 9.6122 41 1 0.1759 2.4302 12.5225 42 1 0.7283 1.1325 7.1632 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799114850.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:30:41 Heat of formation + Delta-G solvation = -39.001595 kcal Electronic energy + Delta-G solvation = -22116.333232 eV Core-core repulsion = 18676.060125 eV Total energy + Delta-G solvation = -3440.273108 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.69913 -39.72890 -38.47114 -37.37119 -35.92616 -34.25255 -32.91899 -30.95465 -30.11327 -28.24595 -27.73078 -27.29745 -25.85912 -23.99443 -23.17622 -21.43933 -20.05859 -19.75408 -18.70922 -18.26825 -17.68527 -16.71063 -16.51574 -16.22701 -16.03514 -15.96801 -15.49259 -15.29639 -15.14106 -14.89412 -14.48130 -14.23022 -13.99842 -13.81039 -13.56467 -13.49098 -13.17490 -12.90354 -12.70491 -12.42138 -12.29818 -12.26612 -12.09681 -11.90365 -11.87602 -11.55734 -11.29286 -11.00809 -10.85341 -10.77634 -10.00574 -9.07073 -8.49737 -8.42681 -6.10774 0.06821 0.77647 1.37479 1.45532 1.54525 1.69593 1.85083 2.20693 2.92748 3.27000 3.35280 3.55613 3.70227 3.74018 3.88529 4.05441 4.13724 4.33602 4.36270 4.47567 4.50232 4.53905 4.58375 4.70856 4.73037 4.74673 4.81614 4.97910 4.99417 5.03500 5.11221 5.16627 5.21601 5.29394 5.33008 5.35082 5.71561 5.73171 5.83719 6.06484 6.20810 6.22794 6.93812 7.02275 7.41236 7.83407 8.80525 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.019491 B = 0.002743 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.197495 B =10204.262419 C =11441.964445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.070 4.070 3 C -0.134 4.134 4 C 0.092 3.908 5 O -0.585 6.585 6 C 0.170 3.830 7 N -0.657 5.657 8 N -0.226 5.226 9 C 0.059 3.941 10 C 0.001 3.999 11 C -0.164 4.164 12 C -0.070 4.070 13 C -0.195 4.195 14 C 0.113 3.887 15 O -0.231 6.231 16 C -0.411 4.411 17 H 0.103 0.897 18 C -0.024 4.024 19 N -0.921 5.921 20 Si 1.016 2.984 21 H -0.264 1.264 22 H -0.273 1.273 23 H -0.252 1.252 24 C -0.218 4.218 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.398 0.602 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.381 0.619 37 H 0.117 0.883 38 H 0.140 0.860 39 H 0.156 0.844 40 H 0.117 0.883 41 H 0.271 0.729 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.830 -4.328 -26.896 27.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.071 4.071 3 C -0.192 4.192 4 C 0.013 3.987 5 O -0.394 6.394 6 C 0.046 3.954 7 N -0.397 5.397 8 N -0.034 5.034 9 C -0.152 4.152 10 C -0.001 4.001 11 C -0.184 4.184 12 C -0.088 4.088 13 C -0.215 4.215 14 C 0.063 3.937 15 O -0.138 6.138 16 C -0.487 4.487 17 H 0.120 0.880 18 C -0.221 4.221 19 N -0.560 5.560 20 Si 0.836 3.164 21 H -0.189 1.189 22 H -0.198 1.198 23 H -0.176 1.176 24 C -0.240 4.240 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.248 0.752 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.220 0.780 37 H 0.135 0.865 38 H 0.157 0.843 39 H 0.173 0.827 40 H 0.135 0.865 41 H 0.080 0.920 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.165 -4.806 -26.584 27.200 hybrid contribution -0.948 1.411 0.223 1.715 sum 2.217 -3.395 -26.361 26.671 Atomic orbital electron populations 1.21752 0.93764 1.02052 1.01615 1.20733 0.96796 0.96498 0.93121 1.21752 1.00987 0.94839 1.01614 1.22003 0.97845 0.94605 0.84227 1.86399 1.77893 1.58091 1.16991 1.20987 0.98361 0.95261 0.80839 1.48075 1.59158 1.33047 0.99389 1.73984 1.15353 1.22257 0.91783 1.23786 1.01824 0.99431 0.90149 1.18204 0.97089 0.95220 0.89614 1.21162 1.01921 0.97607 0.97730 1.21028 0.98012 0.99059 0.90685 1.20610 1.03223 0.97462 1.00205 1.19730 0.93487 0.93417 0.87036 1.83968 1.65224 1.35741 1.28867 1.21802 1.34021 0.97408 0.95470 0.88018 1.26544 0.98688 1.03058 0.93781 1.70191 1.46416 1.40480 0.98904 0.84618 0.77899 0.74995 0.78919 1.18902 1.19772 1.17606 1.21189 1.07499 1.03969 0.91325 0.93381 0.91887 0.92430 0.92441 0.91887 0.93380 0.92236 0.92228 0.75214 0.92110 0.92091 0.77996 0.86532 0.84261 0.82663 0.86473 0.91957 0.85800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 8.15 71.98 0.59 -1.46 16 2 C -0.07 -0.99 0.61 -52.18 -0.03 -1.02 16 3 C -0.13 -2.06 8.16 71.98 0.59 -1.47 16 4 C 0.09 0.96 5.91 71.98 0.43 1.38 16 5 O -0.59 -6.54 12.31 -148.98 -1.83 -8.37 16 6 C 0.17 2.90 5.56 86.38 0.48 3.38 16 7 N -0.66 -14.62 6.03 -187.49 -1.13 -15.75 16 8 N -0.23 -6.41 10.61 -52.16 -0.55 -6.96 16 9 C 0.06 1.82 10.75 87.45 0.94 2.76 16 10 C 0.00 0.04 5.87 -20.15 -0.12 -0.08 16 11 C -0.16 -5.49 9.58 22.58 0.22 -5.27 16 12 C -0.07 -2.36 10.02 22.21 0.22 -2.14 16 13 C -0.19 -8.25 9.98 22.45 0.22 -8.02 16 14 C 0.11 5.63 6.64 22.54 0.15 5.78 16 15 O -0.23 -13.85 9.76 -22.93 -0.22 -14.08 16 16 C -0.41 -23.80 9.48 67.92 0.64 -23.15 16 17 H 0.10 5.38 5.20 -2.91 -0.02 5.36 16 18 C -0.02 -1.33 5.49 84.83 0.47 -0.87 16 19 N -0.92 -56.61 13.67 21.61 0.30 -56.32 16 20 Si 1.02 42.81 29.55 68.60 2.03 44.84 16 21 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 22 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 23 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 24 C -0.22 -9.54 8.90 22.67 0.20 -9.34 16 25 H 0.05 0.78 6.86 -2.39 -0.02 0.76 16 26 H 0.06 1.01 7.68 -2.39 -0.02 0.99 16 27 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 28 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.06 1.01 7.68 -2.38 -0.02 0.99 16 30 H 0.05 0.78 6.86 -2.39 -0.02 0.77 16 31 H 0.06 0.50 8.14 -2.38 -0.02 0.49 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.40 0.96 9.12 -74.06 -0.68 0.29 16 34 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.38 7.81 6.12 -213.32 -1.31 6.51 16 37 H 0.12 3.26 8.02 -2.91 -0.02 3.23 16 38 H 0.14 4.07 7.55 -2.91 -0.02 4.05 16 39 H 0.16 3.94 8.06 -2.91 -0.02 3.92 16 40 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 41 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 42 H 0.12 5.43 5.63 -2.91 -0.02 5.41 16 Total: -1.00 -71.92 352.38 2.63 -69.29 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: -0.94 Total: 26.88 kcal Atomic # 6 Polarization: -44.52 SS G_CDS: 4.99 Total: -39.52 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -1.39 Total: -79.03 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -2.06 Total: -22.45 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -71.92 2.63 -69.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799114850.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.288 kcal (2) G-P(sol) polarization free energy of solvation -71.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds