Wall clock time and date at job start Tue Mar 31 2020 06:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46764 * 2 1 4 4 C 1.53001 * 109.47021 * 240.00391 * 2 1 3 5 5 C 1.50695 * 109.47478 * 119.99986 * 2 1 3 6 6 C 1.39640 * 126.05918 * 74.99634 * 5 2 1 7 7 C 1.38481 * 105.35988 * 180.02562 * 6 5 2 8 8 C 1.47008 * 126.89925 * 179.97438 * 7 6 5 9 9 O 1.21551 * 119.99602 * 354.89400 * 8 7 6 10 10 O 1.34813 * 120.00104 * 174.90003 * 8 7 6 11 11 C 1.45205 * 116.99783 * 185.33019 * 10 8 7 12 12 C 1.50696 * 112.85265 * 54.50756 * 11 10 8 13 13 H 1.08000 * 119.99888 * 245.24209 * 12 11 10 14 14 C 1.37878 * 120.00015 * 65.23870 * 12 11 10 15 15 N 1.31517 * 119.99566 * 185.67447 * 14 12 11 16 16 Si 1.86799 * 119.99993 * 5.68156 * 14 12 11 17 17 H 1.48497 * 109.46957 * 94.44873 * 16 14 12 18 18 H 1.48503 * 109.46936 * 214.44691 * 16 14 12 19 19 H 1.48496 * 109.46869 * 334.44303 * 16 14 12 20 20 C 1.53781 * 113.61196 * 283.19775 * 11 10 8 21 21 C 1.53772 * 87.08311 * 220.02237 * 20 11 10 22 22 C 1.53776 * 87.08074 * 25.43369 * 21 20 11 23 23 N 1.36654 * 106.20771 * 0.23161 * 7 6 5 24 24 H 0.97003 * 125.19032 * 179.77277 * 23 7 6 25 25 N 1.28438 * 109.60904 * 359.61166 * 23 7 6 26 26 H 1.09001 * 109.47271 * 299.99833 * 1 2 3 27 27 H 1.08999 * 109.46849 * 60.00108 * 1 2 3 28 28 H 1.09005 * 109.47059 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46719 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47350 * 299.99586 * 3 2 1 31 31 H 1.09000 * 109.46673 * 60.00394 * 3 2 1 32 32 H 1.08999 * 109.46804 * 299.99465 * 4 2 1 33 33 H 1.08998 * 109.47304 * 59.99687 * 4 2 1 34 34 H 1.09008 * 109.46870 * 180.02562 * 4 2 1 35 35 H 1.08008 * 127.32254 * 0.03027 * 6 5 2 36 36 H 0.96997 * 119.99624 * 180.02562 * 15 14 12 37 37 H 1.09002 * 113.61622 * 334.57515 * 20 11 10 38 38 H 1.09003 * 113.61386 * 105.46495 * 20 11 10 39 39 H 1.09001 * 113.61539 * 270.88459 * 21 20 11 40 40 H 1.08999 * 113.69118 * 139.99281 * 21 20 11 41 41 H 1.09008 * 113.61313 * 220.01970 * 22 21 20 42 42 H 1.09003 * 113.69106 * 89.13071 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 2.0309 -2.0908 1.4407 7 6 2.5817 -2.2709 2.6984 8 6 2.8026 -3.5489 3.3906 9 8 2.4053 -4.5851 2.8948 10 8 3.4456 -3.5715 4.5753 11 6 3.7336 -4.8761 5.1441 12 6 4.4931 -5.7717 4.1996 13 1 4.0328 -6.6729 3.8225 14 6 5.7756 -5.4404 3.8168 15 7 6.3970 -6.1599 2.9080 16 14 6.6305 -3.9701 4.5892 17 1 7.4572 -4.4244 5.7361 18 1 7.5014 -3.3170 3.5791 19 1 5.6124 -3.0000 5.0663 20 6 2.5107 -5.5514 5.7870 21 6 3.4558 -6.0192 6.9061 22 6 4.3415 -4.8122 6.5552 23 7 2.8734 -1.0217 3.1695 24 1 3.2691 -0.8285 4.0338 25 7 2.5469 -0.1429 2.2916 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 -1.7488 -1.2493 33 1 1.6766 -0.2073 -2.1393 34 1 3.1301 -0.7216 -1.2490 35 1 1.6758 -2.8557 0.7658 36 1 7.2994 -5.9271 2.6390 37 1 1.7499 -4.8472 6.1238 38 1 2.0999 -6.3675 5.1926 39 1 3.9283 -6.9807 6.7051 40 1 3.0165 -5.9636 7.9021 41 1 5.4090 -5.0317 6.5811 42 1 4.0825 -3.9053 7.1016 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810855179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:26 Heat of formation + Delta-G solvation = 1.004470 kcal Electronic energy + Delta-G solvation = -24162.739271 eV Core-core repulsion = 20724.200957 eV Total energy + Delta-G solvation = -3438.538314 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.34543 -39.50408 -37.35148 -36.86796 -34.59289 -32.43510 -30.82056 -30.58103 -27.31712 -27.25649 -26.72061 -25.04816 -24.07921 -22.71025 -22.18103 -20.37114 -18.81728 -18.61379 -18.11702 -16.80730 -15.68460 -15.54746 -15.36671 -15.16371 -14.65825 -14.31584 -14.00616 -13.87308 -13.73510 -13.27824 -13.15323 -12.87772 -12.30788 -12.16588 -11.83695 -11.70903 -11.65767 -11.31130 -11.14182 -11.09969 -11.04744 -11.00558 -10.77165 -10.42711 -10.25740 -10.10322 -9.89747 -9.70900 -9.15530 -8.97362 -8.89606 -8.81466 -8.66620 -6.29144 -4.35351 1.57872 2.72124 3.04071 3.16236 3.23399 3.35346 3.50807 3.82321 4.27336 4.48248 4.77332 4.99732 5.01103 5.15043 5.30556 5.40357 5.41959 5.54822 5.60413 5.64705 5.67404 5.78928 5.79494 5.80967 5.88710 5.93326 6.04059 6.09278 6.20280 6.29412 6.30587 6.31304 6.36826 6.55348 6.65260 6.75618 6.85826 7.11513 7.20857 7.32963 7.65560 8.17995 8.29553 8.75041 8.84763 9.31071 10.81182 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.021035 B = 0.004809 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.766243 B = 5821.120309 C = 6162.887548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.019 3.981 3 C -0.134 4.134 4 C -0.140 4.140 5 C 0.033 3.967 6 C -0.157 4.157 7 C -0.001 4.001 8 C 0.530 3.470 9 O -0.466 6.466 10 O -0.374 6.374 11 C 0.200 3.800 12 C -0.505 4.505 13 H 0.088 0.912 14 C 0.084 3.916 15 N -0.873 5.873 16 Si 0.863 3.137 17 H -0.276 1.276 18 H -0.291 1.291 19 H -0.240 1.240 20 C -0.146 4.146 21 C -0.123 4.123 22 C -0.131 4.131 23 N -0.370 5.370 24 H 0.449 0.551 25 N -0.273 5.273 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.162 0.838 36 H 0.268 0.732 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.547 12.110 -1.366 14.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.017 3.983 3 C -0.191 4.191 4 C -0.198 4.198 5 C -0.125 4.125 6 C -0.186 4.186 7 C -0.128 4.128 8 C 0.370 3.630 9 O -0.349 6.349 10 O -0.292 6.292 11 C 0.167 3.833 12 C -0.542 4.542 13 H 0.106 0.894 14 C -0.122 4.122 15 N -0.509 5.509 16 Si 0.689 3.311 17 H -0.203 1.203 18 H -0.218 1.218 19 H -0.163 1.163 20 C -0.184 4.184 21 C -0.161 4.161 22 C -0.169 4.169 23 N -0.086 5.086 24 H 0.294 0.706 25 N -0.107 5.107 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.180 0.820 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.233 12.695 -1.111 15.171 hybrid contribution 0.812 -0.128 0.471 0.948 sum -7.421 12.567 -0.640 14.608 Atomic orbital electron populations 1.21866 0.93480 1.02359 1.01782 1.18865 0.95261 0.94677 0.89489 1.21763 1.01351 0.94400 1.01631 1.21893 1.01565 1.00613 0.95750 1.21790 1.03561 0.91551 0.95572 1.21931 1.04831 0.96475 0.95322 1.21389 1.08647 0.85839 0.96961 1.19302 0.76849 0.86219 0.80633 1.90845 1.46280 1.32370 1.65399 1.86607 1.68380 1.40717 1.33507 1.21754 0.93464 0.78160 0.89966 1.20797 0.97919 1.08396 1.27059 0.89439 1.25021 0.97204 0.96104 0.93863 1.69916 1.13287 1.39287 1.28432 0.87098 0.80282 0.84338 0.79349 1.20265 1.21766 1.16317 1.23344 0.96912 1.00438 0.97713 1.22470 0.97899 0.98680 0.97011 1.23278 0.99841 0.97683 0.96049 1.43656 1.45633 1.02891 1.16440 0.70557 1.73008 1.17172 1.20232 1.00269 0.92568 0.92094 0.92134 0.92504 0.92615 0.92097 0.91927 0.92051 0.92306 0.82006 0.92223 0.91690 0.91082 0.89440 0.92309 0.91309 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.46 37.16 0.31 -1.05 16 2 C 0.02 0.22 0.96 -155.66 -0.15 0.07 16 3 C -0.13 -1.42 8.04 37.16 0.30 -1.12 16 4 C -0.14 -1.49 8.20 37.16 0.30 -1.18 16 5 C 0.03 0.50 5.65 -82.48 -0.47 0.03 16 6 C -0.16 -2.67 10.13 -38.97 -0.39 -3.07 16 7 C 0.00 -0.02 7.21 -82.08 -0.59 -0.61 16 8 C 0.53 11.91 7.51 34.28 0.26 12.16 16 9 O -0.47 -11.76 15.41 -19.30 -0.30 -12.06 16 10 O -0.37 -8.41 8.18 -40.80 -0.33 -8.74 16 11 C 0.20 4.64 0.25 -90.96 -0.02 4.62 16 12 C -0.51 -13.92 7.17 -34.44 -0.25 -14.17 16 13 H 0.09 2.69 8.05 -52.49 -0.42 2.27 16 14 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 15 N -0.87 -26.19 13.96 55.43 0.77 -25.41 16 16 Si 0.86 20.96 24.60 -169.99 -4.18 16.78 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.24 -5.47 5.57 56.52 0.31 -5.15 16 20 C -0.15 -2.97 7.09 -25.92 -0.18 -3.15 16 21 C -0.12 -2.24 7.80 -25.93 -0.20 -2.45 16 22 C -0.13 -2.64 6.01 -25.92 -0.16 -2.80 16 23 N -0.37 -6.04 6.94 33.47 0.23 -5.80 16 24 H 0.45 6.31 8.96 -190.46 -1.71 4.60 16 25 N -0.27 -4.30 11.47 33.63 0.39 -3.91 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 32 H 0.06 0.67 7.59 -51.93 -0.39 0.27 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.16 2.58 7.79 -52.48 -0.41 2.17 16 36 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.07 1.52 8.09 -51.93 -0.42 1.09 16 39 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.46 5.66 -51.92 -0.29 1.16 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 342.39 15.07 5.16 5.16 Total: -1.00 -31.64 342.39 -7.54 -39.18 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -7.94 Total: 5.26 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -1.34 Total: -10.44 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 1.39 Total: -35.13 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.63 Total: -20.81 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.18 Total: 16.78 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.64 -7.54 -39.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810855179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.184 kcal (2) G-P(sol) polarization free energy of solvation -31.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds