Wall clock time and date at job start Tue Mar 31 2020 07:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47034 * 2 1 4 4 C 1.53004 * 109.47001 * 119.99641 * 2 1 3 5 5 N 1.46492 * 109.47016 * 178.69312 * 4 2 1 6 6 C 1.46505 * 120.00172 * 275.58783 * 5 4 2 7 7 C 1.50695 * 109.46970 * 269.99897 * 6 5 4 8 8 H 1.08007 * 119.99861 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00017 * 179.97438 * 7 6 5 10 10 N 1.31508 * 120.00175 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99834 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47156 * 90.00222 * 11 9 7 13 13 H 1.48500 * 109.47168 * 209.99731 * 11 9 7 14 14 H 1.48496 * 109.47582 * 329.99972 * 11 9 7 15 15 C 1.34783 * 119.99975 * 95.58433 * 5 4 2 16 16 O 1.21390 * 119.99659 * 174.36617 * 15 5 4 17 17 C 1.49095 * 120.00037 * 354.64583 * 15 5 4 18 18 O 1.21611 * 119.99768 * 4.22528 * 17 15 5 19 19 C 1.41525 * 120.00270 * 184.23221 * 17 15 5 20 20 C 1.38807 * 126.31158 * 0.02612 * 19 17 15 21 21 C 1.39390 * 106.92214 * 179.97438 * 20 19 17 22 22 C 1.35872 * 107.92205 * 359.97438 * 21 20 19 23 23 N 1.34885 * 109.07826 * 359.75845 * 22 21 20 24 24 C 1.46500 * 125.64572 * 180.25385 * 23 22 21 25 25 H 1.08995 * 109.47101 * 300.00277 * 1 2 3 26 26 H 1.08997 * 109.47014 * 59.99817 * 1 2 3 27 27 H 1.08994 * 109.46852 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47101 * 239.99723 * 2 1 3 29 29 H 1.09004 * 109.47415 * 52.17218 * 3 2 1 30 30 H 1.08999 * 109.47177 * 172.17597 * 3 2 1 31 31 H 1.09007 * 109.47029 * 292.17274 * 3 2 1 32 32 H 1.08999 * 109.46917 * 58.69144 * 4 2 1 33 33 H 1.08999 * 109.46859 * 298.69334 * 4 2 1 34 34 H 1.08999 * 109.46741 * 29.99845 * 6 5 4 35 35 H 1.08999 * 109.47203 * 149.99721 * 6 5 4 36 36 H 0.97000 * 120.00217 * 180.02562 * 10 9 7 37 37 H 1.07998 * 126.54042 * 359.95067 * 20 19 17 38 38 H 1.08003 * 126.03649 * 180.02562 * 21 20 19 39 39 H 1.07999 * 125.46134 * 180.02562 * 22 21 20 40 40 H 1.09007 * 109.46631 * 270.17167 * 24 23 22 41 41 H 1.09000 * 109.47745 * 30.17428 * 24 23 22 42 42 H 1.09005 * 109.47326 * 150.17661 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 7 3.5046 -0.7485 1.2337 6 6 4.2099 -1.7994 0.4956 7 6 4.4488 -2.9775 1.4043 8 1 4.1097 -2.9465 2.4293 9 6 5.1004 -4.0951 0.9272 10 7 5.5129 -4.1331 -0.3209 11 14 5.3972 -5.5552 2.0539 12 1 4.2483 -6.4919 1.9634 13 1 6.6399 -6.2550 1.6403 14 1 5.5392 -5.0798 3.4535 15 6 4.2034 0.1931 1.8983 16 8 5.4125 0.1132 1.9712 17 6 3.4908 1.3295 2.5492 18 8 2.2752 1.3665 2.5467 19 6 4.2289 2.3654 3.1698 20 6 5.6118 2.4554 3.2493 21 6 5.9028 3.6297 3.9416 22 6 4.7260 4.2259 4.2669 23 7 3.7074 3.4743 3.8010 24 6 2.2827 3.7834 3.9453 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.5670 1.9952 0.8117 30 1 3.1210 1.4457 0.1399 31 1 1.7955 1.9143 -0.9517 32 1 1.6577 -1.7418 1.2612 33 1 1.6960 -0.1939 2.1391 34 1 3.6057 -2.1135 -0.3555 35 1 5.1659 -1.4148 0.1403 36 1 5.9709 -4.9195 -0.6566 37 1 6.3260 1.7501 2.8509 38 1 6.8894 4.0005 4.1772 39 1 4.6227 5.1550 4.8077 40 1 1.9074 3.3437 4.8695 41 1 2.1466 4.8644 3.9758 42 1 1.7339 3.3719 3.0982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813425678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:11 Heat of formation + Delta-G solvation = -1.282154 kcal Electronic energy + Delta-G solvation = -24480.968919 eV Core-core repulsion = 21042.331449 eV Total energy + Delta-G solvation = -3438.637470 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 292.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.55120 -39.84377 -37.64581 -36.24540 -33.67957 -32.90840 -32.23814 -29.86037 -27.81972 -26.90321 -26.56452 -25.90324 -24.57840 -22.80994 -20.90250 -20.11304 -19.62880 -18.64776 -17.08776 -16.53841 -16.15281 -15.78304 -15.70045 -14.89938 -14.66925 -14.62853 -14.04898 -13.66580 -13.58149 -13.35584 -13.30047 -13.00513 -12.50192 -12.29495 -12.22608 -12.11886 -12.01925 -11.81137 -11.47276 -11.28241 -10.99637 -10.82702 -10.72278 -10.59581 -10.49701 -10.14768 -9.88705 -9.59130 -8.70399 -8.47661 -8.42772 -8.18429 -7.68191 -6.03724 -4.08189 0.87132 2.44681 2.69085 3.04098 3.32049 3.38463 3.43281 3.66734 3.93505 4.44643 4.66301 4.69609 4.90967 5.07631 5.19370 5.27074 5.30312 5.31065 5.40437 5.45247 5.50745 5.62889 5.86829 5.98119 6.05030 6.14074 6.23656 6.26058 6.30733 6.36640 6.44324 6.60301 6.64411 6.83389 6.97177 7.03358 7.19780 7.39533 7.42541 7.63988 7.92469 8.21860 8.32117 8.79213 8.98155 9.56425 11.04471 Molecular weight = 292.16amu Principal moments of inertia in cm(-1) A = 0.015288 B = 0.005433 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.102352 B = 5152.322228 C = 6393.781267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C -0.143 4.143 4 C 0.086 3.914 5 N -0.561 5.561 6 C 0.243 3.757 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.062 3.938 10 N -0.895 5.895 11 Si 0.898 3.102 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.481 3.519 16 O -0.513 6.513 17 C 0.410 3.590 18 O -0.449 6.449 19 C -0.097 4.097 20 C -0.077 4.077 21 C -0.226 4.226 22 C 0.029 3.971 23 N -0.413 5.413 24 C 0.065 3.935 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.113 0.887 34 H 0.037 0.963 35 H 0.045 0.955 36 H 0.263 0.737 37 H 0.171 0.829 38 H 0.143 0.857 39 H 0.168 0.832 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.878 16.612 5.978 19.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.126 4.126 3 C -0.200 4.200 4 C -0.038 4.038 5 N -0.292 5.292 6 C 0.125 3.875 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.534 5.534 11 Si 0.726 3.274 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.264 3.736 16 O -0.390 6.390 17 C 0.291 3.709 18 O -0.328 6.328 19 C -0.206 4.206 20 C -0.103 4.103 21 C -0.251 4.251 22 C -0.109 4.109 23 N -0.086 5.086 24 C -0.077 4.077 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.130 0.870 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.188 0.812 38 H 0.161 0.839 39 H 0.185 0.815 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.181 16.472 5.869 19.306 hybrid contribution 0.224 -0.838 0.534 1.018 sum -7.957 15.635 6.403 18.675 Atomic orbital electron populations 1.21703 0.95066 1.01524 1.01274 1.21376 0.95428 0.96408 0.99367 1.22086 1.00468 0.96558 1.00922 1.22347 0.79999 1.01473 0.99931 1.48252 1.06712 1.26514 1.47715 1.19415 0.92933 0.83949 0.91244 1.21388 1.37659 0.99527 0.97781 0.92366 1.24914 0.95260 0.98598 0.95203 1.69926 1.39271 1.29703 1.14450 0.86488 0.77657 0.82222 0.81026 1.20657 1.21069 1.19850 1.19881 0.87912 0.84025 0.81795 1.90655 1.13485 1.76068 1.58789 1.20507 0.88194 0.85269 0.76965 1.90374 1.15744 1.75312 1.51415 1.19475 0.94125 0.94261 1.12694 1.22415 0.93550 0.97247 0.97078 1.21042 0.97642 0.98582 1.07786 1.22088 0.87104 0.98543 1.03158 1.43873 1.06807 1.17253 1.40631 1.22286 0.78379 1.02054 1.04937 0.92671 0.93142 0.92712 0.91241 0.91544 0.93674 0.93861 0.90837 0.87004 0.94542 0.93738 0.92700 0.81214 0.83884 0.81518 0.90619 0.90055 0.87967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.19 37.16 0.34 -1.42 16 2 C -0.11 -1.68 3.15 -90.61 -0.29 -1.97 16 3 C -0.14 -2.20 7.66 37.16 0.28 -1.91 16 4 C 0.09 1.56 4.86 -4.04 -0.02 1.54 16 5 N -0.56 -12.35 2.17 -175.71 -0.38 -12.73 16 6 C 0.24 6.38 5.14 -5.19 -0.03 6.35 16 7 C -0.52 -14.95 9.39 -34.44 -0.32 -15.28 16 8 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 9 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 11 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 15 C 0.48 10.40 6.47 -11.75 -0.08 10.32 16 16 O -0.51 -12.46 13.70 5.46 0.07 -12.38 16 17 C 0.41 7.29 5.57 -33.82 -0.19 7.10 16 18 O -0.45 -7.32 8.10 5.27 0.04 -7.28 16 19 C -0.10 -1.58 6.72 -83.70 -0.56 -2.14 16 20 C -0.08 -1.25 9.95 -38.94 -0.39 -1.63 16 21 C -0.23 -2.86 10.81 -40.00 -0.43 -3.29 16 22 C 0.03 0.32 11.35 -17.06 -0.19 0.13 16 23 N -0.41 -5.24 3.15 -121.68 -0.38 -5.62 16 24 C 0.06 0.60 10.53 59.85 0.63 1.23 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.07 0.97 6.00 -51.93 -0.31 0.66 16 30 H 0.04 0.79 5.59 -51.93 -0.29 0.50 16 31 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.07 1.38 8.11 -51.93 -0.42 0.96 16 33 H 0.11 1.96 4.79 -53.64 -0.26 1.70 16 34 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 35 H 0.04 1.29 7.51 -51.93 -0.39 0.90 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.17 3.04 6.09 -52.49 -0.32 2.72 16 38 H 0.14 1.46 8.06 -52.48 -0.42 1.03 16 39 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.10 1.07 6.27 -51.93 -0.33 0.74 16 LS Contribution 339.15 15.07 5.11 5.11 Total: -1.00 -32.15 339.15 -7.24 -39.39 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -6.08 Total: 1.61 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -1.34 Total: 0.72 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: -0.03 Total: -44.12 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: 0.12 Total: -19.66 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.15 -7.24 -39.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813425678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.103 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds